Strain Fitness in Sphingobium sp. HT1-2 around GFF4418

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
4,413,530	+		GFF4416	0.36	+1.1
4,413,533	-		GFF4416	0.37	-1.6
4,413,543	-		GFF4416	0.40	-0.7
4,413,554	-		GFF4416	0.43	+0.7
4,413,573	+		GFF4416	0.48	-0.9
4,413,573	+		GFF4416	0.48	-0.3
4,413,573	+		GFF4416	0.48	-0.6
4,413,581	-		GFF4416	0.50	-0.1
4,413,581	-		GFF4416	0.50	-1.1
4,413,581	-		GFF4416	0.50	-1.9
4,413,586	-		GFF4416	0.51	-0.3
4,413,604	+		GFF4416	0.56	-1.1
4,413,634	-		GFF4416	0.64	-0.6
4,413,645	+		GFF4416	0.67	-0.3
4,413,651	+		GFF4416	0.69	-1.2
4,413,658	-		GFF4416	0.70	-0.1
4,413,668	-		GFF4416	0.73	-1.1
4,413,683	+		GFF4416	0.77	+0.1
4,413,684	-		GFF4416	0.77	-0.7
4,413,691	-		GFF4416	0.79	+1.2
4,413,709	+		GFF4416	0.84	+0.3
4,413,710	+		GFF4416	0.84	-1.6
4,413,710	+		GFF4416	0.84	+0.0
4,413,711	+		GFF4416	0.85	-0.6
4,413,717	-		GFF4416	0.86	-0.1
4,413,718	-		GFF4416	0.86	-1.0
4,413,718	-		GFF4416	0.86	+0.1
4,413,718	-		GFF4416	0.86	-0.9
4,413,718	-		GFF4416	0.86	-0.6
4,413,718	-		GFF4416	0.86	-0.4
4,413,718	-		GFF4416	0.86	+1.6
4,413,730	+		GFF4416	0.90	+0.9
4,413,779	+				+1.0
4,413,792	-				-1.7
4,413,793	-				+0.2
4,413,805	+				-0.2
4,413,805	+				-0.7
4,413,810	+				+0.1
4,413,813	-				+0.8
4,413,823	+				+0.9
4,413,831	-		GFF4417	0.11	-0.0
4,413,838	+		GFF4417	0.12	-1.8
4,413,838	+		GFF4417	0.12	-0.6
4,413,845	+		GFF4417	0.13	-1.3
4,413,846	-		GFF4417	0.13	-2.5
4,413,846	-		GFF4417	0.13	+0.0
4,413,846	-		GFF4417	0.13	+1.1
4,413,850	+		GFF4417	0.14	-0.7
4,413,850	+		GFF4417	0.14	-0.4
4,413,850	+		GFF4417	0.14	-0.0
4,413,850	+		GFF4417	0.14	+0.4
4,413,850	+		GFF4417	0.14	-0.1
4,413,850	+		GFF4417	0.14	+0.3
4,413,850	-		GFF4417	0.14	-2.2
4,413,853	-		GFF4417	0.14	+0.5
4,413,858	-		GFF4417	0.15	+0.1
4,413,858	-		GFF4417	0.15	-1.6
4,413,858	-		GFF4417	0.15	+0.5
4,413,858	-		GFF4417	0.15	-1.0
4,413,858	-		GFF4417	0.15	-1.3
4,413,858	-		GFF4417	0.15	-0.2
4,413,858	-		GFF4417	0.15	-0.9
4,413,863	-		GFF4417	0.16	+0.7
4,413,899	-		GFF4417	0.21	-0.5
4,413,915	-		GFF4417	0.24	-0.6
4,413,920	+		GFF4417	0.25	-0.4
4,413,928	-		GFF4417	0.26	+1.4
4,413,945	-		GFF4417	0.29	-0.8
4,413,960	+		GFF4417	0.31	+0.3
4,413,965	+		GFF4417	0.32	+0.2
4,413,969	-		GFF4417	0.33	-0.6
4,413,972	+		GFF4417	0.33	-1.3
4,413,974	-		GFF4417	0.33	+0.5
4,413,994	+		GFF4417	0.37	+1.6
4,413,999	+		GFF4417	0.38	+0.1
4,414,004	+		GFF4417	0.38	-0.1
4,414,004	+		GFF4417	0.38	-0.2
4,414,019	-		GFF4417	0.41	-1.2
4,414,019	-		GFF4417	0.41	+0.4
4,414,050	+		GFF4417	0.46	-0.6
4,414,055	+		GFF4417	0.46	-0.3
4,414,085	-		GFF4417	0.51	+0.2
4,414,096	+		GFF4417	0.53	-1.0
4,414,104	-		GFF4417	0.54	+0.3
4,414,122	+		GFF4417	0.57	+0.2
4,414,132	-		GFF4417	0.59	+0.2
4,414,138	+		GFF4417	0.60	-0.9
4,414,146	+		GFF4417	0.61	+1.1
4,414,146	-		GFF4417	0.61	+1.2
4,414,146	-		GFF4417	0.61	-1.5
4,414,162	+		GFF4417	0.64	-0.4
4,414,203	-		GFF4417	0.70	+0.6
4,414,228	+		GFF4417	0.74	-0.5
4,414,228	+		GFF4417	0.74	-0.1
4,414,228	+		GFF4417	0.74	+0.4
4,414,233	-		GFF4417	0.75	+0.6
4,414,236	-		GFF4417	0.75	-0.5
4,414,271	-		GFF4417	0.81	-0.3
4,414,294	-		GFF4417	0.85	-0.7
4,414,308	-		GFF4417	0.87	+0.1
4,414,309	+		GFF4417	0.87	-1.0
4,414,365	+				-1.2
4,414,368	+				+1.0
4,414,424	+				-1.1
4,414,426	-				-0.3
4,414,504	-				-1.6
4,414,504	-				-0.9
4,414,519	+				-1.3
4,414,519	+				+0.1
4,414,522	-				-0.9
4,414,524	+				-0.5
4,414,524	+				+0.3
4,414,524	+				-0.1
4,414,524	+				+0.0
4,414,524	+				+0.4
4,414,527	-				+1.0
4,414,527	-				+1.5
4,414,529	+				+0.7
4,414,532	-				-2.1
4,414,532	-				+0.9
4,414,532	-				+0.0
4,414,532	-				-0.7
4,414,554	-				-0.3
4,414,580	+				+0.1
4,414,588	-		GFF4418	0.11	-0.3
4,414,590	+		GFF4418	0.11	+0.1
4,414,590	+		GFF4418	0.11	-0.3
4,414,590	+		GFF4418	0.11	-1.1
4,414,590	+		GFF4418	0.11	+0.1
4,414,590	+		GFF4418	0.11	-1.2
4,414,590	+		GFF4418	0.11	-0.5
4,414,590	+		GFF4418	0.11	+0.4
4,414,598	-		GFF4418	0.12	+0.7
4,414,598	-		GFF4418	0.12	-1.0
4,414,598	-		GFF4418	0.12	-0.6
4,414,615	-		GFF4418	0.14	+0.5
4,414,627	+		GFF4418	0.15	+1.2
4,414,640	-		GFF4418	0.16	+0.3
4,414,640	-		GFF4418	0.16	-0.5
4,414,642	+		GFF4418	0.17	+0.1
4,414,642	+		GFF4418	0.17	-0.1
4,414,642	+		GFF4418	0.17	-1.6
4,414,649	+		GFF4418	0.17	+0.1
4,414,650	+		GFF4418	0.18	+1.0
4,414,650	-		GFF4418	0.18	-1.1
4,414,650	-		GFF4418	0.18	-0.8
4,414,650	-		GFF4418	0.18	-0.4
4,414,650	-		GFF4418	0.18	-0.4
4,414,677	+		GFF4418	0.20	-0.3
4,414,717	+		GFF4418	0.25	+0.7
4,414,744	-		GFF4418	0.28	+0.9
4,414,752	+		GFF4418	0.29	+0.0
4,414,752	+		GFF4418	0.29	-0.4
4,414,757	+		GFF4418	0.29	-0.0
4,414,760	-		GFF4418	0.30	-1.6
4,414,767	+		GFF4418	0.30	-2.1
4,414,770	-		GFF4418	0.31	+1.0
4,414,827	+		GFF4418	0.37	+0.0
4,414,827	+		GFF4418	0.37	-0.2
4,414,827	+		GFF4418	0.37	+0.3
4,414,827	+		GFF4418	0.37	-0.1
4,414,827	+		GFF4418	0.37	-0.1
4,414,827	+		GFF4418	0.37	-0.1
4,414,827	+		GFF4418	0.37	-0.7
4,414,827	+		GFF4418	0.37	-0.3
4,414,827	+		GFF4418	0.37	-0.6
4,414,827	+		GFF4418	0.37	+0.2
4,414,827	+		GFF4418	0.37	-1.4
4,414,827	+		GFF4418	0.37	-0.9
4,414,827	+		GFF4418	0.37	+0.8
4,414,827	+		GFF4418	0.37	+1.1
4,414,827	+		GFF4418	0.37	+0.2
4,414,827	+		GFF4418	0.37	-1.8
4,414,827	+		GFF4418	0.37	+0.1
4,414,827	+		GFF4418	0.37	-0.0
4,414,827	+		GFF4418	0.37	+0.2
4,414,827	+		GFF4418	0.37	-0.7
4,414,827	+		GFF4418	0.37	-0.4
4,414,827	+		GFF4418	0.37	-0.2
4,414,827	+		GFF4418	0.37	-0.8
4,414,827	+		GFF4418	0.37	-1.6
4,414,835	-		GFF4418	0.38	+1.5
4,414,835	-		GFF4418	0.38	+0.2
4,414,835	-		GFF4418	0.38	+0.1
4,414,835	-		GFF4418	0.38	-2.0
4,414,835	-		GFF4418	0.38	+0.9
4,414,835	-		GFF4418	0.38	-0.2
4,414,835	-		GFF4418	0.38	+0.7
4,414,835	-		GFF4418	0.38	+0.4
4,414,835	-		GFF4418	0.38	-0.2
4,414,835	-		GFF4418	0.38	-0.4
4,414,835	-		GFF4418	0.38	+0.9
4,414,835	-		GFF4418	0.38	-1.6
4,414,835	-		GFF4418	0.38	+0.5
4,414,835	-		GFF4418	0.38	-0.4
4,414,835	-		GFF4418	0.38	-1.9
4,414,835	-		GFF4418	0.38	-2.2
4,414,835	-		GFF4418	0.38	-1.0
4,414,835	-		GFF4418	0.38	-0.9
4,414,835	-		GFF4418	0.38	-0.2
4,414,835	-		GFF4418	0.38	-1.2
4,414,835	-		GFF4418	0.38	-0.3
4,414,837	+		GFF4418	0.38	+0.1
4,414,837	+		GFF4418	0.38	-1.1
4,414,837	+		GFF4418	0.38	-1.2
4,414,837	+		GFF4418	0.38	+0.4
4,414,837	+		GFF4418	0.38	+0.5
4,414,837	+		GFF4418	0.38	+0.4
4,414,837	+		GFF4418	0.38	-1.0
4,414,837	+		GFF4418	0.38	-0.4
4,414,837	+		GFF4418	0.38	-0.9
4,414,837	+		GFF4418	0.38	+0.1
4,414,837	+		GFF4418	0.38	+0.2
4,414,837	+		GFF4418	0.38	+0.9
4,414,837	+		GFF4418	0.38	-0.4
4,414,837	+		GFF4418	0.38	-0.2
4,414,837	+		GFF4418	0.38	-2.0
4,414,837	+		GFF4418	0.38	+0.4
4,414,837	+		GFF4418	0.38	+0.3
4,414,837	+		GFF4418	0.38	+0.7
4,414,837	+		GFF4418	0.38	-1.9
4,414,837	+		GFF4418	0.38	-0.1
4,414,845	-		GFF4418	0.39	+0.4
4,414,845	-		GFF4418	0.39	+0.3
4,414,845	-		GFF4418	0.39	-0.1
4,414,845	-		GFF4418	0.39	-0.2
4,414,845	-		GFF4418	0.39	-1.6
4,414,845	-		GFF4418	0.39	-0.7
4,414,845	-		GFF4418	0.39	+0.2
4,414,845	-		GFF4418	0.39	+0.7
4,414,845	-		GFF4418	0.39	-0.0
4,414,845	-		GFF4418	0.39	-0.9
4,414,845	-		GFF4418	0.39	-0.1
4,414,845	-		GFF4418	0.39	+0.6
4,414,845	-		GFF4418	0.39	+1.3
4,414,845	-		GFF4418	0.39	-1.7
4,414,845	-		GFF4418	0.39	+1.2
4,414,845	-		GFF4418	0.39	+0.2
4,414,845	-		GFF4418	0.39	-0.3
4,414,845	-		GFF4418	0.39	+0.6
4,414,845	-		GFF4418	0.39	-0.7
4,414,845	-		GFF4418	0.39	+1.1
4,414,845	-		GFF4418	0.39	-0.8
4,414,845	-		GFF4418	0.39	-1.6
4,414,845	-		GFF4418	0.39	-1.7
4,414,860	+		GFF4418	0.40	-0.4
4,414,860	+		GFF4418	0.40	+0.7
4,414,860	+		GFF4418	0.40	-0.2
4,414,860	+		GFF4418	0.40	+0.8
4,414,860	+		GFF4418	0.40	-1.6
4,414,860	+		GFF4418	0.40	+0.5
4,414,860	+		GFF4418	0.40	+0.3
4,414,860	+		GFF4418	0.40	-0.5
4,414,860	+		GFF4418	0.40	+0.3
4,414,868	-		GFF4418	0.41	-0.6
4,414,868	-		GFF4418	0.41	-1.6
4,414,868	-		GFF4418	0.41	-0.2
4,414,893	+		GFF4418	0.44	+0.2
4,414,900	-		GFF4418	0.45	-0.3
4,414,901	-		GFF4418	0.45	+0.7
4,414,908	+		GFF4418	0.46	-0.3
4,414,908	+		GFF4418	0.46	-1.6
4,414,916	-		GFF4418	0.47	+0.1
4,414,916	-		GFF4418	0.47	-0.7
4,414,916	-		GFF4418	0.47	-1.0
4,414,944	+		GFF4418	0.50	+1.1
4,414,949	+		GFF4418	0.50	+1.3
4,414,957	-		GFF4418	0.51	+0.2
4,414,959	+		GFF4418	0.51	+0.4
4,414,962	+		GFF4418	0.52	-0.4
4,414,974	-		GFF4418	0.53	+0.7
4,414,974	-		GFF4418	0.53	-0.1
4,414,978	+		GFF4418	0.53	-1.4
4,414,991	+		GFF4418	0.55	+0.5
4,415,034	+		GFF4418	0.59	+0.5
4,415,034	+		GFF4418	0.59	-0.7
4,415,042	-		GFF4418	0.60	+0.3
4,415,053	-		GFF4418	0.61	-0.8
4,415,080	+		GFF4418	0.64	-0.2
4,415,094	+		GFF4418	0.66	+0.8
4,415,094	+		GFF4418	0.66	-1.6
4,415,102	-		GFF4418	0.67	+0.4
4,415,102	-		GFF4418	0.67	-0.7
4,415,122	-		GFF4418	0.69	-0.3
4,415,132	+		GFF4418	0.70	-1.1
4,415,150	+		GFF4418	0.72	+0.8
4,415,163	+		GFF4418	0.73	-0.1
4,415,164	+		GFF4418	0.74	+0.8
4,415,177	+		GFF4418	0.75	+0.3
4,415,179	+		GFF4418	0.75	+1.1
4,415,201	+		GFF4418	0.78	+0.1
4,415,201	+		GFF4418	0.78	-0.1
4,415,201	+		GFF4418	0.78	-1.1
4,415,206	+		GFF4418	0.78	+0.2
4,415,223	+		GFF4418	0.80	+0.8
4,415,231	-		GFF4418	0.81	+0.3
4,415,231	-		GFF4418	0.81	+0.8
4,415,233	+		GFF4418	0.81	-0.5
4,415,233	+		GFF4418	0.81	-0.3
4,415,240	+		GFF4418	0.82	+1.0
4,415,275	+		GFF4418	0.86	+0.7
4,415,277	-		GFF4418	0.86	-0.5
4,415,282	+		GFF4418	0.86	-0.1
4,415,282	+		GFF4418	0.86	+0.5
4,415,282	+		GFF4418	0.86	+0.1
4,415,283	-		GFF4418	0.86	+0.2
4,415,292	+		GFF4418	0.87	-2.1
4,415,300	-		GFF4418	0.88	+0.7
4,415,311	-		GFF4418	0.90	-1.0
4,415,316	-				+0.1
4,415,320	+				+1.0
4,415,320	+				+0.4
4,415,323	-				+0.0
4,415,326	-				-0.6
4,415,331	+				-2.1
4,415,341	+				+0.2
4,415,347	+				-1.1
4,415,355	-				+0.6
4,415,378	+				-1.8
4,415,381	-				+0.4
4,415,386	-				-0.9
4,415,417	+				+0.2
4,415,420	-				-0.0
4,415,424	+				+0.1
4,415,424	-				-0.0
4,415,425	-				-0.4
4,415,427	-				-0.1
4,415,479	+		GFF4419	0.17	-0.5
4,415,495	+		GFF4419	0.21	-0.3
4,415,501	+		GFF4419	0.22	-0.4
4,415,533	+		GFF4419	0.30	-0.5
4,415,533	+		GFF4419	0.30	+0.4
4,415,533	+		GFF4419	0.30	-0.8
4,415,543	+		GFF4419	0.32	+0.9
4,415,543	+		GFF4419	0.32	-1.7
4,415,558	+		GFF4419	0.35	+0.1
4,415,558	+		GFF4419	0.35	+0.2
4,415,558	+		GFF4419	0.35	-0.2
4,415,558	+		GFF4419	0.35	+1.0
4,415,558	+		GFF4419	0.35	+1.1
4,415,563	+		GFF4419	0.37	-2.0
4,415,565	+		GFF4419	0.37	-1.0
4,415,566	-		GFF4419	0.37	+0.4
4,415,566	-		GFF4419	0.37	-0.1
4,415,566	-		GFF4419	0.37	+0.2
4,415,566	-		GFF4419	0.37	-1.0
4,415,566	-		GFF4419	0.37	-0.9
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4,415,834	+				+1.0
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4,416,229	-				+0.1
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