Strain Fitness in Sphingobium sp. HT1-2 around GFF4314

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
4,321,598	+		GFF4313	0.27	-0.9
4,321,599	+		GFF4313	0.27	-0.2
4,321,600	-		GFF4313	0.27	+0.3
4,321,601	+		GFF4313	0.27	-1.1
4,321,605	+		GFF4313	0.27	+0.3
4,321,607	+		GFF4313	0.27	-1.2
4,321,607	+		GFF4313	0.27	-1.0
4,321,650	+		GFF4313	0.31	+0.2
4,321,662	+		GFF4313	0.31	-0.4
4,321,662	+		GFF4313	0.31	-1.7
4,321,667	+		GFF4313	0.32	-1.1
4,321,670	-		GFF4313	0.32	+0.1
4,321,670	-		GFF4313	0.32	+0.0
4,321,672	+		GFF4313	0.32	-0.0
4,321,680	-		GFF4313	0.33	-1.8
4,321,680	-		GFF4313	0.33	-0.1
4,321,680	-		GFF4313	0.33	-1.5
4,321,687	-		GFF4313	0.33	-1.1
4,321,711	-		GFF4313	0.35	-1.5
4,321,735	+		GFF4313	0.37	+0.3
4,321,736	-		GFF4313	0.37	+0.8
4,321,736	-		GFF4313	0.37	-0.2
4,321,736	-		GFF4313	0.37	-0.5
4,321,748	+		GFF4313	0.38	+0.1
4,321,748	+		GFF4313	0.38	+0.6
4,321,748	+		GFF4313	0.38	-0.8
4,321,748	+		GFF4313	0.38	+0.1
4,321,748	+		GFF4313	0.38	-1.5
4,321,748	+		GFF4313	0.38	-0.2
4,321,748	+		GFF4313	0.38	-0.6
4,321,753	+		GFF4313	0.38	+0.4
4,321,756	-		GFF4313	0.39	-0.3
4,321,756	-		GFF4313	0.39	-0.5
4,321,756	-		GFF4313	0.39	+0.5
4,321,756	-		GFF4313	0.39	+0.5
4,321,756	-		GFF4313	0.39	-1.5
4,321,756	-		GFF4313	0.39	-2.3
4,321,763	+		GFF4313	0.39	+0.4
4,321,771	-		GFF4313	0.40	+0.0
4,321,773	+		GFF4313	0.40	-3.4
4,321,773	+		GFF4313	0.40	+0.8
4,321,773	+		GFF4313	0.40	-1.1
4,321,778	-		GFF4313	0.40	+0.3
4,321,783	+		GFF4313	0.41	+1.2
4,321,795	+		GFF4313	0.42	-0.5
4,321,811	-		GFF4313	0.43	-0.6
4,321,818	+		GFF4313	0.43	+0.1
4,321,819	-		GFF4313	0.43	-1.7
4,321,828	-		GFF4313	0.44	-1.5
4,321,836	-		GFF4313	0.45	-2.1
4,321,845	+		GFF4313	0.45	-0.3
4,321,845	+		GFF4313	0.45	-2.9
4,321,845	+		GFF4313	0.45	-1.0
4,321,845	+		GFF4313	0.45	-0.5
4,321,845	+		GFF4313	0.45	-1.2
4,321,846	+		GFF4313	0.45	-0.5
4,321,853	-		GFF4313	0.46	-1.9
4,321,853	-		GFF4313	0.46	+0.1
4,321,853	-		GFF4313	0.46	-0.5
4,321,853	-		GFF4313	0.46	+0.4
4,321,896	-		GFF4313	0.49	-1.3
4,321,899	-		GFF4313	0.49	-2.1
4,321,901	-		GFF4313	0.50	-0.3
4,321,909	-		GFF4313	0.50	-2.2
4,321,911	+		GFF4313	0.50	+1.0
4,321,924	+		GFF4313	0.51	+0.1
4,321,929	+		GFF4313	0.52	+0.5
4,321,932	-		GFF4313	0.52	-0.3
4,321,937	+		GFF4313	0.52	+0.3
4,321,954	+		GFF4313	0.54	+0.4
4,321,960	+		GFF4313	0.54	+0.1
4,321,962	-		GFF4313	0.54	-2.3
4,321,976	+		GFF4313	0.55	+0.5
4,321,984	-		GFF4313	0.56	-0.1
4,321,995	+		GFF4313	0.57	+0.2
4,322,002	+		GFF4313	0.57	-0.1
4,322,002	+		GFF4313	0.57	-1.5
4,322,002	+		GFF4313	0.57	-2.6
4,322,002	+		GFF4313	0.57	+1.0
4,322,002	+		GFF4313	0.57	+1.2
4,322,002	+		GFF4313	0.57	+0.3
4,322,005	-		GFF4313	0.57	-0.4
4,322,007	+		GFF4313	0.58	-1.9
4,322,010	-		GFF4313	0.58	+0.9
4,322,010	-		GFF4313	0.58	-0.4
4,322,010	-		GFF4313	0.58	-0.8
4,322,010	-		GFF4313	0.58	-1.0
4,322,010	-		GFF4313	0.58	-0.9
4,322,010	-		GFF4313	0.58	-0.5
4,322,010	-		GFF4313	0.58	-0.1
4,322,010	-		GFF4313	0.58	-0.5
4,322,010	-		GFF4313	0.58	-1.2
4,322,012	+		GFF4313	0.58	-1.5
4,322,039	+		GFF4313	0.60	+1.1
4,322,044	+		GFF4313	0.60	+0.5
4,322,047	-		GFF4313	0.61	-1.8
4,322,047	-		GFF4313	0.61	-0.8
4,322,047	-		GFF4313	0.61	+1.4
4,322,055	+		GFF4313	0.61	-0.7
4,322,057	+		GFF4313	0.61	-0.2
4,322,073	-		GFF4313	0.63	-1.0
4,322,091	+		GFF4313	0.64	-0.4
4,322,101	+		GFF4313	0.65	-2.3
4,322,134	+		GFF4313	0.67	-0.2
4,322,137	+		GFF4313	0.67	+0.3
4,322,137	+		GFF4313	0.67	+1.6
4,322,137	+		GFF4313	0.67	-1.1
4,322,171	-		GFF4313	0.70	+0.1
4,322,185	-		GFF4313	0.71	-0.8
4,322,186	+		GFF4313	0.71	-0.7
4,322,187	-		GFF4313	0.71	+0.0
4,322,213	+		GFF4313	0.73	+0.2
4,322,247	+		GFF4313	0.76	-0.2
4,322,247	+		GFF4313	0.76	+1.1
4,322,247	+		GFF4313	0.76	-0.4
4,322,247	+		GFF4313	0.76	+0.1
4,322,255	-		GFF4313	0.76	-0.5
4,322,255	-		GFF4313	0.76	+0.8
4,322,255	-		GFF4313	0.76	-0.5
4,322,255	-		GFF4313	0.76	+0.1
4,322,255	-		GFF4313	0.76	+0.8
4,322,258	+		GFF4313	0.77	+0.5
4,322,266	-		GFF4313	0.77	-2.5
4,322,281	-		GFF4313	0.78	-0.1
4,322,289	-		GFF4313	0.79	+0.6
4,322,333	-		GFF4313	0.82	+0.0
4,322,337	+		GFF4313	0.83	+0.0
4,322,337	-		GFF4313	0.83	-0.2
4,322,340	-		GFF4313	0.83	-0.0
4,322,345	-		GFF4313	0.83	+0.0
4,322,352	+		GFF4313	0.84	+0.6
4,322,352	+		GFF4313	0.84	-1.5
4,322,360	-		GFF4313	0.84	-0.1
4,322,360	-		GFF4313	0.84	+0.0
4,322,362	-		GFF4313	0.84	+0.2
4,322,364	+		GFF4313	0.85	-1.0
4,322,364	+		GFF4313	0.85	+0.2
4,322,373	+		GFF4313	0.85	-2.0
4,322,373	+		GFF4313	0.85	-0.0
4,322,373	+		GFF4313	0.85	-2.1
4,322,373	+		GFF4313	0.85	-0.9
4,322,373	-		GFF4313	0.85	-0.5
4,322,380	+		GFF4313	0.86	-2.0
4,322,381	-		GFF4313	0.86	+0.6
4,322,381	-		GFF4313	0.86	+0.7
4,322,391	-		GFF4313	0.87	+0.6
4,322,393	+		GFF4313	0.87	-0.5
4,322,395	-		GFF4313	0.87	-0.1
4,322,395	-		GFF4313	0.87	-2.3
4,322,403	+		GFF4313	0.88	+0.7
4,322,404	+		GFF4313	0.88	-1.5
4,322,404	+		GFF4313	0.88	+0.0
4,322,404	+		GFF4313	0.88	-0.8
4,322,411	+		GFF4313	0.88	-0.2
4,322,416	-		GFF4313	0.89	-0.9
4,322,420	-		GFF4313	0.89	-1.7
4,322,440	+				-0.7
4,322,440	+				+0.3
4,322,440	+				-1.5
4,322,440	+				-2.3
4,322,445	+				-1.2
4,322,453	-				+0.1
4,322,453	-				-0.5
4,322,453	-				+0.2
4,322,453	-				+0.9
4,322,453	-				+0.3
4,322,458	-				+0.1
4,322,506	+				-0.7
4,322,546	-				+0.7
4,322,552	-				-1.5
4,322,562	-				-1.8
4,322,562	-				+0.3
4,322,564	+				-2.0
4,322,568	+				-0.2
4,322,576	+				-0.3
4,322,576	+				+1.7
4,322,576	+				-0.1
4,322,576	+				-0.4
4,322,576	+				-0.8
4,322,576	+				-0.4
4,322,584	-				-1.0
4,322,584	-				-0.1
4,322,584	-				+0.1
4,322,584	-				-0.3
4,322,584	-				-1.3
4,322,584	-				-1.3
4,322,587	+				+0.1
4,322,602	+				+0.2
4,322,610	-				-0.4
4,322,610	-				+0.6
4,322,612	+				+0.2
4,322,612	+				-1.7
4,322,612	+				+1.3
4,322,612	+				-0.0
4,322,612	+				-2.0
4,322,612	+				-0.3
4,322,614	+				-0.5
4,322,615	-				+0.4
4,322,620	-				-0.1
4,322,620	-				+0.1
4,322,634	+				+0.3
4,322,635	-				+0.1
4,322,635	-				-1.8
4,322,671	-		GFF4314	0.13	-1.3
4,322,684	+		GFF4314	0.15	-2.1
4,322,692	-		GFF4314	0.16	-1.8
4,322,692	-		GFF4314	0.16	+0.4
4,322,731	+		GFF4314	0.21	-1.0
4,322,760	-		GFF4314	0.24	-0.1
4,322,770	+		GFF4314	0.25	-0.3
4,322,786	-		GFF4314	0.27	-0.8
4,322,787	+		GFF4314	0.28	-0.4
4,322,795	-		GFF4314	0.29	-1.8
4,322,819	-		GFF4314	0.31	+0.1
4,322,825	+		GFF4314	0.32	+0.2
4,322,858	+		GFF4314	0.36	-0.1
4,322,866	-		GFF4314	0.37	-0.8
4,322,866	-		GFF4314	0.37	+0.5
4,322,866	-		GFF4314	0.37	+1.4
4,322,894	+		GFF4314	0.41	-1.4
4,322,894	+		GFF4314	0.41	+0.9
4,322,894	+		GFF4314	0.41	-0.8
4,322,894	+		GFF4314	0.41	-0.3
4,322,894	+		GFF4314	0.41	-0.2
4,322,894	+		GFF4314	0.41	-0.7
4,322,894	+		GFF4314	0.41	-1.5
4,322,894	+		GFF4314	0.41	+0.6
4,322,894	+		GFF4314	0.41	-0.7
4,322,894	+		GFF4314	0.41	+0.5
4,322,894	+		GFF4314	0.41	-0.8
4,322,894	+		GFF4314	0.41	+0.1
4,322,894	+		GFF4314	0.41	-0.0
4,322,902	-		GFF4314	0.42	-0.6
4,322,902	-		GFF4314	0.42	+0.5
4,322,902	-		GFF4314	0.42	-0.5
4,322,902	-		GFF4314	0.42	-1.2
4,322,902	-		GFF4314	0.42	-0.1
4,322,902	-		GFF4314	0.42	+0.5
4,322,902	-		GFF4314	0.42	-0.5
4,322,902	-		GFF4314	0.42	-1.5
4,322,902	-		GFF4314	0.42	-1.4
4,322,902	-		GFF4314	0.42	-0.4
4,322,902	-		GFF4314	0.42	+0.3
4,322,902	-		GFF4314	0.42	-0.5
4,322,902	-		GFF4314	0.42	-3.1
4,322,909	+		GFF4314	0.43	-0.1
4,322,912	-		GFF4314	0.43	+0.1
4,322,944	-		GFF4314	0.47	-1.7
4,322,949	-		GFF4314	0.47	+0.8
4,322,956	-		GFF4314	0.48	+0.8
4,322,963	-		GFF4314	0.49	+0.5
4,322,994	+		GFF4314	0.53	-0.8
4,322,998	+		GFF4314	0.54	-2.0
4,322,998	+		GFF4314	0.54	-0.5
4,322,998	+		GFF4314	0.54	-0.6
4,323,000	-		GFF4314	0.54	-0.7
4,323,000	-		GFF4314	0.54	+0.6
4,323,006	+		GFF4314	0.54	-0.0
4,323,006	+		GFF4314	0.54	-2.1
4,323,006	-		GFF4314	0.54	-0.0
4,323,006	-		GFF4314	0.54	-1.9
4,323,007	-		GFF4314	0.55	-0.5
4,323,013	-		GFF4314	0.55	+0.1
4,323,015	-		GFF4314	0.56	+1.0
4,323,040	-		GFF4314	0.59	-1.7
4,323,044	+		GFF4314	0.59	-0.2
4,323,051	-		GFF4314	0.60	-2.1
4,323,057	-		GFF4314	0.61	-2.1
4,323,095	-		GFF4314	0.65	+0.0
4,323,122	+		GFF4314	0.69	+0.2
4,323,127	+		GFF4314	0.69	+0.5
4,323,127	+		GFF4314	0.69	-1.2
4,323,130	-		GFF4314	0.70	-0.2
4,323,132	+		GFF4314	0.70	-3.0
4,323,139	+		GFF4314	0.71	+0.2
4,323,159	+		GFF4314	0.73	-0.4
4,323,159	-		GFF4314	0.73	-3.0
4,323,160	+		GFF4314	0.73	-0.5
4,323,164	+		GFF4314	0.74	-1.6
4,323,164	+		GFF4314	0.74	+0.4
4,323,172	-		GFF4314	0.75	+0.7
4,323,172	-		GFF4314	0.75	+0.0
4,323,174	+		GFF4314	0.75	+1.0
4,323,180	+		GFF4314	0.76	-1.0
4,323,187	+		GFF4314	0.77	-0.9
4,323,195	+		GFF4314	0.78	-0.1
4,323,195	-		GFF4314	0.78	-0.0
4,323,212	+		GFF4314	0.80	-0.3
4,323,212	+		GFF4314	0.80	+0.3
4,323,212	+		GFF4314	0.80	+1.8
4,323,220	-		GFF4314	0.81	-1.0
4,323,220	-		GFF4314	0.81	+0.1
4,323,220	-		GFF4314	0.81	-0.9
4,323,220	-		GFF4314	0.81	-0.5
4,323,220	-		GFF4314	0.81	+0.6
4,323,220	-		GFF4314	0.81	-0.8
4,323,227	-		GFF4314	0.82	+0.4
4,323,247	+		GFF4314	0.84	-0.2
4,323,247	+		GFF4314	0.84	-0.8
4,323,255	-		GFF4314	0.85	+0.1
4,323,264	+		GFF4314	0.86	+0.2
4,323,264	+		GFF4314	0.86	+1.0
4,323,269	+		GFF4314	0.87	+0.2
4,323,272	-		GFF4314	0.87	+0.5
4,323,277	-		GFF4314	0.88	-0.2
4,323,280	+		GFF4314	0.88	+0.5
4,323,280	+		GFF4314	0.88	-0.7
4,323,280	+		GFF4314	0.88	+1.0
4,323,287	-		GFF4314	0.89	+0.4
4,323,288	-		GFF4314	0.89	-0.4
4,323,295	+				-1.0
4,323,301	+				-0.4
4,323,309	-				+0.3
4,323,309	-				-1.3
4,323,309	-				+0.2
4,323,318	+				-2.6
4,323,318	+				-0.4
4,323,318	+				-0.8
4,323,333	-				+1.4
4,323,341	+				-0.4
4,323,341	+				-2.1
4,323,349	-				+0.6
4,323,349	-				+0.1
4,323,349	-				-0.6
4,323,349	-				-0.6
4,323,349	-				-1.8
4,323,349	-				-0.6
4,323,349	-				-1.6
4,323,349	-				-0.5
4,323,351	+				-0.3
4,323,351	+				+0.9
4,323,351	+				+0.0
4,323,351	+				-0.3
4,323,351	+				+1.6
4,323,351	+				-1.2
4,323,359	-				-1.7
4,323,359	-				-0.7
4,323,359	-				-0.3
4,323,359	-				+0.0
4,323,364	-				+0.6
4,323,374	-				-0.8
4,323,402	-				+0.0
4,323,430	-				-0.7
4,323,437	+		GFF4315	0.11	+0.8
4,323,438	-		GFF4315	0.11	+1.0
4,323,438	-		GFF4315	0.11	-0.9
4,323,438	-		GFF4315	0.11	-1.7
4,323,438	-		GFF4315	0.11	-0.5
4,323,445	-		GFF4315	0.12	-0.4
4,323,449	+		GFF4315	0.13	+0.4
4,323,457	-		GFF4315	0.15	-1.5
4,323,485	-		GFF4315	0.19	+0.4
4,323,486	-		GFF4315	0.19	+0.8
4,323,493	+		GFF4315	0.21	-0.2
4,323,497	+		GFF4315	0.21	+1.1
4,323,500	+		GFF4315	0.22	-0.8
4,323,500	+		GFF4315	0.22	+1.3
4,323,501	-		GFF4315	0.22	+0.1
4,323,507	+		GFF4315	0.23	-0.9
4,323,508	-		GFF4315	0.23	+0.3
4,323,508	-		GFF4315	0.23	+0.8
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4,323,522	-		GFF4315	0.26	-1.0
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4,323,536	+		GFF4315	0.28	-0.1
4,323,536	+		GFF4315	0.28	-1.0
4,323,536	+		GFF4315	0.28	-2.6
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4,323,544	-		GFF4315	0.29	-1.7
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4,323,604	-		GFF4315	0.40	-1.1
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4,323,672	+		GFF4315	0.51	-1.3
4,323,672	+		GFF4315	0.51	+0.3
4,323,677	+		GFF4315	0.52	+0.1
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4,323,683	+		GFF4315	0.53	+0.7
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4,323,691	-		GFF4315	0.55	+0.7
4,323,717	+		GFF4315	0.59	-0.8
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4,323,725	-		GFF4315	0.60	-1.5
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4,323,761	+		GFF4315	0.66	-0.3
4,323,778	+		GFF4315	0.69	-2.6
4,323,778	+		GFF4315	0.69	-1.6
4,323,778	+		GFF4315	0.69	-0.1
4,323,778	+		GFF4315	0.69	-1.2
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4,323,786	-		GFF4315	0.71	-1.1
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4,323,789	+		GFF4315	0.71	+0.2
4,323,789	+		GFF4315	0.71	-0.1
4,323,789	+		GFF4315	0.71	+0.5
4,323,789	+		GFF4315	0.71	-2.7
4,323,789	+		GFF4315	0.71	-2.2
4,323,791	+		GFF4315	0.72	-0.3
4,323,794	-		GFF4315	0.72	-2.6
4,323,797	-		GFF4315	0.73	-0.3
4,323,797	-		GFF4315	0.73	-0.0
4,323,820	-		GFF4315	0.77	+0.1
4,323,859	-		GFF4315	0.83	-0.3
4,323,892	+		GFF4315	0.89	+0.3
4,323,894	+		GFF4315	0.89	-0.0
4,323,895	-		GFF4315	0.89	-0.5
4,323,909	-				-1.9
4,323,909	-				+0.4
4,323,911	+				-0.5
4,323,911	+				+1.4
4,323,911	+				+0.8
4,323,919	-				+0.2
4,323,919	-				-1.4
4,323,930	-				-0.5
4,323,930	-				-1.8
4,323,932	+				-0.1
4,323,932	+				-1.4
4,323,946	+				-1.3
4,323,978	+				-0.1
4,323,978	+				-0.2
4,323,978	+				-0.4
4,323,978	+				+0.3
4,323,978	+				-0.8
4,323,985	+				+0.7
4,323,986	+				+0.4
4,323,986	-				+0.7
4,323,986	-				-0.2
4,323,986	-				-0.1
4,323,986	-				+1.2
4,323,986	-				-1.1
4,323,986	-				-0.6
4,323,986	-				-2.3
4,323,986	-				-0.1
4,323,986	-				-0.3
4,323,986	-				-1.2
4,323,986	-				-1.6
4,323,986	-				-0.1
4,323,993	-		GFF4316	0.12	-0.6
4,323,993	-		GFF4316	0.12	-1.6
4,323,995	+		GFF4316	0.13	-1.2
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4,324,004	-		GFF4316	0.16	+0.9
4,324,027	+		GFF4316	0.24	-1.5
4,324,036	-		GFF4316	0.27	-0.1
4,324,042	-		GFF4316	0.29	-2.1
4,324,067	+		GFF4316	0.38	-0.9
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4,324,142	+		GFF4316	0.65	-0.6
4,324,147	+		GFF4316	0.66	+0.1
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4,324,193	-		GFF4316	0.82	-1.0
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4,324,200	+		GFF4316	0.85	+0.8
4,324,200	+		GFF4316	0.85	+0.7
4,324,200	+		GFF4316	0.85	+0.3
4,324,200	+		GFF4316	0.85	-0.4
4,324,200	+		GFF4316	0.85	-0.7
4,324,200	+		GFF4316	0.85	-0.3
4,324,200	+		GFF4316	0.85	+1.0
4,324,200	+		GFF4316	0.85	-0.1
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4,324,208	-		GFF4316	0.88	+0.2
4,324,208	-		GFF4316	0.88	-1.0
4,324,208	-		GFF4316	0.88	-0.5
4,324,208	-		GFF4316	0.88	+0.6
4,324,208	-		GFF4316	0.88	+0.4
4,324,218	-				-2.2
4,324,223	+				+0.0
4,324,227	+				-1.0
4,324,227	+				-3.1
4,324,227	+				-1.5
4,324,228	+				+0.1
4,324,229	+				-0.6
4,324,235	-				+0.3
4,324,235	-				-0.7
4,324,235	-				-1.3
4,324,237	+				-1.1
4,324,237	+				-0.5
4,324,237	+				-1.4
4,324,237	+				-0.1
4,324,237	-				+1.4
4,324,245	-				-0.7
4,324,245	-				-1.7
4,324,245	-				+1.1
4,324,245	-				+0.4
4,324,245	-				-1.6
4,324,245	-				+0.4
4,324,256	-				-2.5
4,324,259	+				-0.2
4,324,270	+				-0.4
4,324,282	+				-2.6
4,324,288	-				-0.8
4,324,290	-				-1.6
4,324,290	-				+1.3
4,324,301	+				-0.1
4,324,342	-		GFF4317	0.18	-0.1
4,324,354	+		GFF4317	0.22	-0.3
4,324,367	+		GFF4317	0.26	-1.3
4,324,367	+		GFF4317	0.26	-1.7