Strain Fitness in Sphingobium sp. HT1-2 around GFF4289

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
4,298,609	-		GFF4288	0.15	-1.0
4,298,616	+		GFF4288	0.16	+0.4
4,298,616	+		GFF4288	0.16	+1.8
4,298,616	+		GFF4288	0.16	-1.3
4,298,616	+		GFF4288	0.16	+0.8
4,298,616	+		GFF4288	0.16	+0.6
4,298,616	+		GFF4288	0.16	-1.0
4,298,616	+		GFF4288	0.16	-0.5
4,298,624	-		GFF4288	0.18	-0.5
4,298,624	-		GFF4288	0.18	+1.1
4,298,624	-		GFF4288	0.18	+0.2
4,298,624	-		GFF4288	0.18	-2.3
4,298,624	-		GFF4288	0.18	+0.3
4,298,624	-		GFF4288	0.18	-1.3
4,298,624	-		GFF4288	0.18	-1.4
4,298,642	+		GFF4288	0.21	-0.2
4,298,650	-		GFF4288	0.23	-0.4
4,298,674	+		GFF4288	0.27	-0.5
4,298,674	+		GFF4288	0.27	+0.7
4,298,674	+		GFF4288	0.27	-0.1
4,298,682	-		GFF4288	0.29	+1.6
4,298,682	-		GFF4288	0.29	+1.4
4,298,682	-		GFF4288	0.29	+0.1
4,298,682	-		GFF4288	0.29	+0.9
4,298,697	-		GFF4288	0.32	+0.8
4,298,701	-		GFF4288	0.32	-1.1
4,298,704	+		GFF4288	0.33	+0.3
4,298,712	-		GFF4288	0.34	-2.0
4,298,712	-		GFF4288	0.34	-0.3
4,298,712	-		GFF4288	0.34	+1.0
4,298,716	+		GFF4288	0.35	-1.7
4,298,716	+		GFF4288	0.35	+0.1
4,298,748	+		GFF4288	0.41	+0.0
4,298,748	+		GFF4288	0.41	+0.0
4,298,748	+		GFF4288	0.41	+0.2
4,298,749	-		GFF4288	0.42	-1.1
4,298,756	-		GFF4288	0.43	+0.1
4,298,756	-		GFF4288	0.43	-1.3
4,298,793	-		GFF4288	0.50	-1.2
4,298,797	+		GFF4288	0.51	+0.0
4,298,805	-		GFF4288	0.52	+0.5
4,298,839	+		GFF4288	0.59	-0.8
4,298,839	+		GFF4288	0.59	-1.7
4,298,847	-		GFF4288	0.60	+0.5
4,298,856	+		GFF4288	0.62	-0.2
4,298,856	+		GFF4288	0.62	+0.5
4,298,869	-		GFF4288	0.65	+0.4
4,298,879	-		GFF4288	0.66	+0.3
4,298,888	+		GFF4288	0.68	-0.2
4,298,896	-		GFF4288	0.70	-0.4
4,298,896	-		GFF4288	0.70	-0.2
4,298,910	-		GFF4288	0.72	+0.2
4,298,935	-		GFF4288	0.77	+0.5
4,298,996	-		GFF4288	0.89	+0.4
4,298,996	-		GFF4288	0.89	+0.1
4,298,998	+		GFF4288	0.89	-1.5
4,299,006	-				-0.1
4,299,015	+				-0.4
4,299,020	+				+1.2
4,299,023	-				-0.5
4,299,023	-				-0.4
4,299,031	+				-0.2
4,299,072	-				-1.8
4,299,100	+				+0.1
4,299,100	+				+1.2
4,299,100	+				-2.0
4,299,135	+				-0.3
4,299,141	+				+0.3
4,299,142	+				-0.3
4,299,143	+				-0.3
4,299,151	-				+0.1
4,299,170	-				-2.0
4,299,171	+				-0.4
4,299,183	+				+1.5
4,299,183	+				+0.3
4,299,191	+				+1.5
4,299,191	+				-1.5
4,299,191	-				+0.0
4,299,191	-				-1.6
4,299,199	-				-0.1
4,299,268	+				-0.3
4,299,268	-				+0.7
4,299,268	-				+1.5
4,299,276	-				+0.0
4,299,276	-				+0.0
4,299,276	-				-1.5
4,299,279	+				-0.6
4,299,279	+				+0.8
4,299,296	+				+0.3
4,299,301	+				+0.5
4,299,301	+				+0.3
4,299,301	+				-0.5
4,299,304	-				+0.6
4,299,307	-				-1.6
4,299,309	-				-1.0
4,299,309	-				+0.6
4,299,309	-				+0.9
4,299,309	-				+0.2
4,299,309	-				+0.1
4,299,309	-				+0.5
4,299,309	-				-0.3
4,299,309	-				+0.7
4,299,311	+				+1.2
4,299,311	+				-1.2
4,299,319	-				+0.1
4,299,321	-				+1.1
4,299,326	+				-2.1
4,299,326	-				-1.4
4,299,334	-				+0.3
4,299,334	-				-0.4
4,299,343	+				-2.1
4,299,343	+				-0.3
4,299,343	+				-0.5
4,299,344	+				+0.4
4,299,344	+				-0.2
4,299,344	+				+0.8
4,299,344	+				+2.0
4,299,344	+				-0.1
4,299,344	+				+0.5
4,299,344	+				-1.8
4,299,349	+				-0.7
4,299,351	-				-1.5
4,299,351	-				-0.9
4,299,351	-				-0.4
4,299,351	-				-1.7
4,299,351	-				+1.0
4,299,351	-				+1.0
4,299,351	-				+0.9
4,299,351	-				-0.1
4,299,352	-				+0.7
4,299,352	-				-0.2
4,299,352	-				-0.2
4,299,352	-				-0.5
4,299,352	-				+1.4
4,299,352	-				+1.1
4,299,352	-				+1.3
4,299,352	-				-0.2
4,299,352	-				-2.6
4,299,352	-				-2.4
4,299,352	-				-0.1
4,299,352	-				-0.2
4,299,352	-				+0.2
4,299,352	-				+0.7
4,299,354	+				-0.3
4,299,357	-				-2.8
4,299,357	-				+1.7
4,299,357	-				-0.6
4,299,376	+				-1.8
4,299,376	+				+0.2
4,299,419	-				-0.5
4,299,419	-				+1.3
4,299,419	-				-0.5
4,299,425	+				+1.2
4,299,425	+				-0.5
4,299,425	+				-0.9
4,299,433	-				+0.1
4,299,435	+				-0.5
4,299,435	+				-0.3
4,299,435	+				-0.3
4,299,435	+				+0.6
4,299,435	+				-0.6
4,299,435	+				-0.5
4,299,435	+				+1.0
4,299,443	+				+0.5
4,299,443	-				-1.2
4,299,443	-				-0.1
4,299,443	-				-0.8
4,299,458	+				+0.4
4,299,461	-				-0.5
4,299,466	-				-0.2
4,299,472	+				-1.1
4,299,528	+				+0.6
4,299,535	+				-0.1
4,299,546	-				-0.3
4,299,546	-				-1.5
4,299,546	-				+0.2
4,299,552	+				-1.8
4,299,552	+				-2.9
4,299,552	+				+0.7
4,299,552	+				-0.0
4,299,560	-				+0.0
4,299,560	-				+1.3
4,299,560	-				-0.3
4,299,562	+				+0.6
4,299,566	+				-1.5
4,299,572	+				+0.6
4,299,575	-				+1.0
4,299,580	-				-1.0
4,299,580	-				-0.3
4,299,583	-				-1.7
4,299,590	-				-0.9
4,299,601	+				+0.6
4,299,601	+				-1.7
4,299,603	+				-0.2
4,299,603	+				-1.2
4,299,603	+				+1.3
4,299,609	-				-0.0
4,299,609	-				+0.5
4,299,609	-				-1.5
4,299,611	-				-0.1
4,299,611	-				+0.3
4,299,611	-				-0.4
4,299,626	-				-1.9
4,299,626	-				-1.2
4,299,626	-				+0.6
4,299,630	-				+0.2
4,299,654	+				-0.9
4,299,666	+				+0.1
4,299,672	+				-0.3
4,299,687	+				-0.7
4,299,687	+				-0.3
4,299,695	-				+0.6
4,299,695	-				+1.2
4,299,695	-				-0.5
4,299,695	-				-0.8
4,299,695	-				-0.5
4,299,703	-				-0.3
4,299,710	+				-0.1
4,299,712	+				-0.3
4,299,735	+		GFF4289	0.10	-1.2
4,299,763	+		GFF4289	0.12	-0.3
4,299,763	+		GFF4289	0.12	-2.3
4,299,766	-		GFF4289	0.13	+0.3
4,299,771	-		GFF4289	0.13	+0.5
4,299,771	-		GFF4289	0.13	+0.3
4,299,771	-		GFF4289	0.13	-0.5
4,299,771	-		GFF4289	0.13	+0.2
4,299,787	+		GFF4289	0.14	-1.0
4,299,809	-		GFF4289	0.16	-0.2
4,299,811	+		GFF4289	0.16	-2.1
4,299,811	+		GFF4289	0.16	+0.7
4,299,819	-		GFF4289	0.17	-1.4
4,299,828	+		GFF4289	0.17	+0.3
4,299,838	-		GFF4289	0.18	+0.4
4,299,840	+		GFF4289	0.18	+0.9
4,299,848	-		GFF4289	0.19	+0.4
4,299,848	-		GFF4289	0.19	-0.0
4,299,848	-		GFF4289	0.19	+0.3
4,299,848	-		GFF4289	0.19	-0.1
4,299,852	+		GFF4289	0.19	-0.8
4,299,852	+		GFF4289	0.19	+0.4
4,299,852	+		GFF4289	0.19	+0.1
4,299,852	+		GFF4289	0.19	-0.7
4,299,852	+		GFF4289	0.19	-0.7
4,299,852	+		GFF4289	0.19	-1.9
4,299,852	+		GFF4289	0.19	+0.2
4,299,852	+		GFF4289	0.19	-2.3
4,299,852	+		GFF4289	0.19	+0.0
4,299,852	+		GFF4289	0.19	+0.7
4,299,852	+		GFF4289	0.19	-1.6
4,299,852	+		GFF4289	0.19	-0.6
4,299,852	+		GFF4289	0.19	-1.4
4,299,852	+		GFF4289	0.19	-0.1
4,299,852	+		GFF4289	0.19	-1.8
4,299,852	+		GFF4289	0.19	-1.8
4,299,853	-		GFF4289	0.19	-0.2
4,299,857	+		GFF4289	0.20	+0.1
4,299,857	+		GFF4289	0.20	-0.5
4,299,857	+		GFF4289	0.20	-1.0
4,299,857	+		GFF4289	0.20	-0.4
4,299,857	+		GFF4289	0.20	-1.7
4,299,860	-		GFF4289	0.20	+0.2
4,299,860	-		GFF4289	0.20	+0.7
4,299,860	-		GFF4289	0.20	-1.5
4,299,860	-		GFF4289	0.20	-1.1
4,299,860	-		GFF4289	0.20	-1.7
4,299,860	-		GFF4289	0.20	-0.9
4,299,860	-		GFF4289	0.20	-0.0
4,299,860	-		GFF4289	0.20	-2.2
4,299,860	-		GFF4289	0.20	-0.4
4,299,860	-		GFF4289	0.20	+0.3
4,299,860	-		GFF4289	0.20	+0.2
4,299,860	-		GFF4289	0.20	-2.0
4,299,865	-		GFF4289	0.20	-1.5
4,299,875	-		GFF4289	0.21	+0.5
4,299,875	-		GFF4289	0.21	-1.8
4,299,878	+		GFF4289	0.21	-1.4
4,299,879	+		GFF4289	0.22	-1.0
4,299,973	+		GFF4289	0.29	+0.1
4,299,981	-		GFF4289	0.30	-1.9
4,299,981	-		GFF4289	0.30	+0.3
4,299,991	+		GFF4289	0.30	-1.8
4,299,999	-		GFF4289	0.31	-1.2
4,300,004	-		GFF4289	0.31	-0.4
4,300,017	+		GFF4289	0.32	-0.7
4,300,017	+		GFF4289	0.32	-1.7
4,300,017	+		GFF4289	0.32	-1.5
4,300,017	+		GFF4289	0.32	+0.6
4,300,025	-		GFF4289	0.33	+1.0
4,300,056	-		GFF4289	0.36	-0.8
4,300,058	+		GFF4289	0.36	-1.8
4,300,071	+		GFF4289	0.37	-0.5
4,300,084	+		GFF4289	0.38	-0.8
4,300,089	-		GFF4289	0.38	+1.3
4,300,105	+		GFF4289	0.39	-0.3
4,300,105	+		GFF4289	0.39	-1.2
4,300,105	+		GFF4289	0.39	-2.2
4,300,105	+		GFF4289	0.39	-1.7
4,300,113	-		GFF4289	0.40	-0.1
4,300,113	-		GFF4289	0.40	+1.2
4,300,113	-		GFF4289	0.40	-0.5
4,300,113	-		GFF4289	0.40	-0.8
4,300,113	-		GFF4289	0.40	+0.9
4,300,113	-		GFF4289	0.40	-0.7
4,300,113	-		GFF4289	0.40	-0.3
4,300,115	+		GFF4289	0.40	-1.4
4,300,118	+		GFF4289	0.40	+0.2
4,300,131	+		GFF4289	0.42	+1.2
4,300,132	+		GFF4289	0.42	+0.1
4,300,139	-		GFF4289	0.42	-0.3
4,300,139	-		GFF4289	0.42	+0.9
4,300,139	-		GFF4289	0.42	+0.3
4,300,168	+		GFF4289	0.44	-0.6
4,300,168	+		GFF4289	0.44	-1.3
4,300,168	+		GFF4289	0.44	+0.0
4,300,172	-		GFF4289	0.45	+0.1
4,300,176	+		GFF4289	0.45	-0.5
4,300,176	-		GFF4289	0.45	-1.5
4,300,176	-		GFF4289	0.45	+1.2
4,300,176	-		GFF4289	0.45	-1.7
4,300,176	-		GFF4289	0.45	-1.0
4,300,176	-		GFF4289	0.45	+0.0
4,300,176	-		GFF4289	0.45	-0.5
4,300,176	-		GFF4289	0.45	-0.2
4,300,176	-		GFF4289	0.45	-0.1
4,300,176	-		GFF4289	0.45	-0.6
4,300,176	-		GFF4289	0.45	+0.3
4,300,184	-		GFF4289	0.46	-1.3
4,300,211	+		GFF4289	0.48	+0.5
4,300,212	+		GFF4289	0.48	+0.1
4,300,212	+		GFF4289	0.48	+0.0
4,300,219	-		GFF4289	0.48	+0.2
4,300,221	-		GFF4289	0.49	-1.5
4,300,222	-		GFF4289	0.49	+1.3
4,300,246	+		GFF4289	0.51	-0.2
4,300,254	-		GFF4289	0.51	-0.9
4,300,270	+		GFF4289	0.53	+0.0
4,300,279	+		GFF4289	0.53	-2.5
4,300,291	+		GFF4289	0.54	+0.6
4,300,301	-		GFF4289	0.55	-0.2
4,300,310	+		GFF4289	0.56	+0.2
4,300,310	+		GFF4289	0.56	-1.5
4,300,310	+		GFF4289	0.56	+0.9
4,300,310	+		GFF4289	0.56	-0.6
4,300,318	-		GFF4289	0.56	-1.5
4,300,318	-		GFF4289	0.56	+1.0
4,300,319	-		GFF4289	0.56	+0.5
4,300,336	+		GFF4289	0.58	+0.1
4,300,357	+		GFF4289	0.59	-1.5
4,300,357	+		GFF4289	0.59	-0.1
4,300,357	+		GFF4289	0.59	-0.7
4,300,357	+		GFF4289	0.59	-1.0
4,300,357	+		GFF4289	0.59	-0.7
4,300,357	+		GFF4289	0.59	-0.4
4,300,357	+		GFF4289	0.59	-0.3
4,300,365	-		GFF4289	0.60	-1.1
4,300,365	-		GFF4289	0.60	-0.5
4,300,365	-		GFF4289	0.60	+1.7
4,300,365	-		GFF4289	0.60	-1.3
4,300,365	-		GFF4289	0.60	-0.2
4,300,365	-		GFF4289	0.60	-0.5
4,300,365	-		GFF4289	0.60	+1.3
4,300,365	-		GFF4289	0.60	-1.6
4,300,370	-		GFF4289	0.60	-0.8
4,300,381	+		GFF4289	0.61	+0.0
4,300,381	+		GFF4289	0.61	-1.0
4,300,383	-		GFF4289	0.62	+0.7
4,300,385	+		GFF4289	0.62	-0.4
4,300,386	+		GFF4289	0.62	-2.1
4,300,386	+		GFF4289	0.62	-0.1
4,300,386	+		GFF4289	0.62	-0.6
4,300,391	+		GFF4289	0.62	-0.7
4,300,393	-		GFF4289	0.62	+0.8
4,300,396	+		GFF4289	0.63	-0.5
4,300,404	+		GFF4289	0.63	-0.8
4,300,404	+		GFF4289	0.63	-0.9
4,300,433	-		GFF4289	0.65	-0.3
4,300,436	+		GFF4289	0.66	-1.1
4,300,442	+		GFF4289	0.66	+1.6
4,300,447	+		GFF4289	0.67	-0.4
4,300,447	+		GFF4289	0.67	+0.7
4,300,447	+		GFF4289	0.67	-2.1
4,300,453	+		GFF4289	0.67	-2.2
4,300,453	+		GFF4289	0.67	-1.0
4,300,455	-		GFF4289	0.67	+0.5
4,300,455	-		GFF4289	0.67	+0.3
4,300,455	-		GFF4289	0.67	-0.7
4,300,455	-		GFF4289	0.67	+0.1
4,300,455	-		GFF4289	0.67	-0.7
4,300,455	-		GFF4289	0.67	-0.3
4,300,455	-		GFF4289	0.67	+1.7
4,300,461	-		GFF4289	0.68	+0.1
4,300,461	-		GFF4289	0.68	+0.8
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4,300,740	-		GFF4289	0.90	+0.8
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4,300,763	+				+0.9
4,300,763	+				+0.8
4,300,770	+				-1.2
4,300,771	-				+0.9
4,300,783	-				-1.1
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4,300,791	+				-0.5
4,300,804	-				+0.4
4,300,822	+				-0.3
4,300,833	-				+0.4
4,300,857	+				+0.3
4,300,859	+				-0.2
4,300,865	-				+0.0
4,300,865	-				-0.8
4,300,865	-				-1.1
4,300,867	-				-0.3
4,300,871	-				+0.1
4,300,876	-				-0.7
4,300,881	-				+0.4
4,300,881	-				-1.1
4,300,881	-				+0.9
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4,300,886	+				+1.5
4,300,887	+				+0.2
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4,300,895	-				-1.7
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4,301,298	-				+0.8
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