Strain Fitness in Sphingobium sp. HT1-2 around GFF4287

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
4,296,933	+				+0.7
4,296,933	+				+1.5
4,296,938	+				-0.8
4,296,941	-				+0.3
4,296,941	-				-0.0
4,296,941	-				+0.1
4,296,941	-				-0.5
4,296,946	+				-0.4
4,296,946	+				-0.7
4,296,946	+				-1.2
4,296,946	+				+0.5
4,296,946	+				-0.5
4,296,946	+				-0.2
4,296,946	+				+0.2
4,296,946	+				+0.5
4,296,946	+				-1.7
4,296,946	+				+0.0
4,296,946	+				-0.1
4,296,954	-				-0.2
4,296,954	-				-0.7
4,296,954	-				-0.8
4,296,954	-				+0.2
4,296,973	+				-2.2
4,296,979	-				-0.3
4,296,981	-				+0.2
4,296,981	-				-0.1
4,296,988	-				+0.3
4,296,990	-				+0.7
4,297,014	+				-0.8
4,297,040	+				+0.2
4,297,059	+				+1.6
4,297,059	+				-0.1
4,297,073	+		GFF4285	0.11	+0.0
4,297,081	+		GFF4285	0.15	-0.1
4,297,081	+		GFF4285	0.15	+0.8
4,297,081	+		GFF4285	0.15	-1.7
4,297,081	+		GFF4285	0.15	+1.6
4,297,081	+		GFF4285	0.15	-2.0
4,297,081	+		GFF4285	0.15	-0.7
4,297,081	+		GFF4285	0.15	-1.9
4,297,081	+		GFF4285	0.15	-0.3
4,297,089	-		GFF4285	0.19	-0.3
4,297,089	-		GFF4285	0.19	+0.3
4,297,106	+		GFF4285	0.27	+0.6
4,297,114	-		GFF4285	0.31	+0.4
4,297,145	+		GFF4285	0.47	-0.4
4,297,150	-		GFF4285	0.49	-0.2
4,297,153	+		GFF4285	0.50	+1.3
4,297,158	+		GFF4285	0.53	+0.1
4,297,171	+		GFF4285	0.59	-0.4
4,297,172	+		GFF4285	0.60	-1.0
4,297,174	-		GFF4285	0.61	+0.5
4,297,179	-		GFF4285	0.63	+0.7
4,297,186	+		GFF4285	0.67	-0.5
4,297,186	-		GFF4285	0.67	+0.9
4,297,201	+		GFF4285	0.74	-1.3
4,297,201	+		GFF4285	0.74	-0.5
4,297,201	+		GFF4285	0.74	-0.4
4,297,203	+		GFF4285	0.75	+1.0
4,297,206	+		GFF4285	0.76	-0.1
4,297,209	-		GFF4285	0.78	-0.1
4,297,211	+		GFF4285	0.79	-0.4
4,297,233	+				-1.0
4,297,237	+				-0.5
4,297,237	-				+0.4
4,297,245	-				+0.3
4,297,245	-				+0.1
4,297,293	+				-0.5
4,297,293	+				+0.2
4,297,293	+				-0.8
4,297,293	+				+0.3
4,297,293	+				-0.7
4,297,293	+				+0.7
4,297,293	+				-0.9
4,297,293	+				-0.0
4,297,293	+				+0.4
4,297,293	+				-0.0
4,297,293	+				+0.5
4,297,293	+				+0.6
4,297,301	-				+0.8
4,297,301	-				+0.1
4,297,301	-				+0.5
4,297,301	-				-0.2
4,297,301	-				+0.2
4,297,301	-				+0.5
4,297,301	-				-0.7
4,297,301	-				+0.5
4,297,301	-				-1.6
4,297,301	-				+0.6
4,297,310	-				-0.3
4,297,326	+				+0.7
4,297,326	+				-0.4
4,297,326	+				-1.7
4,297,326	+				-2.2
4,297,326	+				-0.7
4,297,326	+				+0.7
4,297,326	+				-1.0
4,297,326	+				+0.5
4,297,326	+				+0.3
4,297,326	+				+0.3
4,297,328	+				+0.3
4,297,328	-				+0.5
4,297,334	-				+0.2
4,297,334	-				-0.7
4,297,334	-				+0.6
4,297,334	-				-0.8
4,297,334	-				+0.9
4,297,334	-				+1.1
4,297,334	-				-0.2
4,297,334	-				-0.2
4,297,336	-				-0.1
4,297,336	-				-1.7
4,297,341	-				-2.2
4,297,342	-				-1.8
4,297,360	+				-2.3
4,297,362	+				-1.3
4,297,366	+				+0.3
4,297,371	+				+0.6
4,297,377	+				-1.2
4,297,384	+				-1.0
4,297,412	-				+0.5
4,297,413	+				+0.2
4,297,441	-				+0.0
4,297,442	+				+0.3
4,297,463	-				+0.7
4,297,463	-				+0.1
4,297,473	-				-1.9
4,297,485	-				+0.2
4,297,500	+				-0.9
4,297,500	+				-0.0
4,297,500	+				+0.6
4,297,508	-				-0.3
4,297,508	-				+0.3
4,297,508	-				+0.4
4,297,508	-				+0.9
4,297,508	-				+0.7
4,297,510	-				+0.1
4,297,514	-				+1.1
4,297,521	+				-0.9
4,297,521	+				-1.2
4,297,521	+				-0.6
4,297,524	-				+1.5
4,297,524	-				-1.7
4,297,529	-				-2.3
4,297,529	-				-0.8
4,297,558	+		GFF4286	0.15	-0.0
4,297,558	+		GFF4286	0.15	+0.1
4,297,558	-		GFF4286	0.15	+0.4
4,297,558	-		GFF4286	0.15	+0.9
4,297,584	+		GFF4286	0.23	-0.8
4,297,604	+		GFF4286	0.30	-0.4
4,297,607	-		GFF4286	0.31	-0.3
4,297,612	-		GFF4286	0.32	-0.7
4,297,612	-		GFF4286	0.32	-0.5
4,297,614	+		GFF4286	0.33	-0.7
4,297,622	-		GFF4286	0.36	-1.7
4,297,637	+		GFF4286	0.41	+0.3
4,297,710	-		GFF4286	0.65	+0.1
4,297,711	+		GFF4286	0.65	+0.7
4,297,719	-		GFF4286	0.68	-0.4
4,297,732	+		GFF4286	0.72	-1.5
4,297,745	-		GFF4286	0.76	-0.4
4,297,745	-		GFF4286	0.76	+0.3
4,297,760	-		GFF4286	0.81	-0.1
4,297,760	-		GFF4286	0.81	+0.6
4,297,769	+		GFF4286	0.84	-3.0
4,297,769	+		GFF4286	0.84	-0.0
4,297,777	-		GFF4286	0.87	-0.1
4,297,777	-		GFF4286	0.87	-0.6
4,297,777	-		GFF4286	0.87	+0.2
4,297,789	-				-0.6
4,297,803	+				-0.9
4,297,804	-				-0.3
4,297,804	-				-2.0
4,297,804	-				-0.5
4,297,804	-				-0.4
4,297,810	+				+0.4
4,297,811	-				+1.3
4,297,811	-				+0.4
4,297,812	+				-1.8
4,297,812	+				-0.7
4,297,812	+				+0.7
4,297,812	+				-1.0
4,297,820	-				+0.5
4,297,859	+				-0.8
4,297,867	-				-1.0
4,297,867	-				-1.4
4,297,867	-				+0.5
4,297,878	+				-0.3
4,297,906	+				-1.5
4,297,909	-				-0.0
4,297,911	+				+0.5
4,297,911	+				-0.3
4,297,942	+				-0.3
4,297,942	+				+0.7
4,297,942	+				-0.5
4,297,942	+				+0.2
4,297,942	+				-0.1
4,297,944	+				+0.1
4,297,944	+				-2.4
4,297,944	+				+1.1
4,297,944	+				+0.2
4,297,949	+				-0.1
4,297,950	-				-1.1
4,297,950	-				-0.1
4,297,950	-				-0.5
4,297,952	-				+0.5
4,297,952	-				-0.9
4,297,952	-				-0.5
4,297,952	-				+0.1
4,297,952	-				-0.8
4,297,952	-				+0.2
4,297,957	-				-1.8
4,297,962	+				-1.3
4,297,968	+		GFF4287	0.11	+0.7
4,297,973	+		GFF4287	0.12	+0.0
4,298,019	+		GFF4287	0.19	-0.8
4,298,027	-		GFF4287	0.20	-0.7
4,298,027	-		GFF4287	0.20	+0.3
4,298,027	-		GFF4287	0.20	-0.5
4,298,031	+		GFF4287	0.21	+0.1
4,298,031	+		GFF4287	0.21	-0.0
4,298,032	+		GFF4287	0.21	+0.3
4,298,034	-		GFF4287	0.21	-2.0
4,298,037	+		GFF4287	0.22	-1.3
4,298,038	+		GFF4287	0.22	+0.4
4,298,038	+		GFF4287	0.22	-2.2
4,298,039	-		GFF4287	0.22	-0.1
4,298,043	+		GFF4287	0.23	+0.8
4,298,043	+		GFF4287	0.23	-3.0
4,298,043	+		GFF4287	0.23	+0.3
4,298,043	+		GFF4287	0.23	-0.6
4,298,043	+		GFF4287	0.23	-0.3
4,298,043	+		GFF4287	0.23	-0.4
4,298,043	+		GFF4287	0.23	-0.7
4,298,043	+		GFF4287	0.23	-1.5
4,298,043	+		GFF4287	0.23	+0.5
4,298,043	+		GFF4287	0.23	-0.7
4,298,043	+		GFF4287	0.23	+1.3
4,298,043	+		GFF4287	0.23	-1.8
4,298,043	+		GFF4287	0.23	-0.5
4,298,043	+		GFF4287	0.23	-2.5
4,298,043	+		GFF4287	0.23	+0.0
4,298,043	+		GFF4287	0.23	-2.5
4,298,043	+		GFF4287	0.23	+0.8
4,298,043	+		GFF4287	0.23	-1.5
4,298,043	+		GFF4287	0.23	-0.6
4,298,043	+		GFF4287	0.23	+0.6
4,298,043	+		GFF4287	0.23	+0.5
4,298,043	+		GFF4287	0.23	+0.3
4,298,043	+		GFF4287	0.23	+1.6
4,298,046	-		GFF4287	0.23	+1.1
4,298,046	-		GFF4287	0.23	-1.8
4,298,046	-		GFF4287	0.23	-0.4
4,298,051	+		GFF4287	0.24	-0.9
4,298,051	-		GFF4287	0.24	-0.1
4,298,051	-		GFF4287	0.24	+1.6
4,298,051	-		GFF4287	0.24	+0.8
4,298,051	-		GFF4287	0.24	-0.3
4,298,051	-		GFF4287	0.24	+1.4
4,298,051	-		GFF4287	0.24	-0.6
4,298,051	-		GFF4287	0.24	+0.0
4,298,051	-		GFF4287	0.24	-0.0
4,298,051	-		GFF4287	0.24	-1.2
4,298,051	-		GFF4287	0.24	-1.0
4,298,051	-		GFF4287	0.24	+0.3
4,298,051	-		GFF4287	0.24	-1.4
4,298,051	-		GFF4287	0.24	-0.8
4,298,051	-		GFF4287	0.24	-0.1
4,298,051	-		GFF4287	0.24	-0.5
4,298,051	-		GFF4287	0.24	-0.8
4,298,051	-		GFF4287	0.24	-2.8
4,298,051	-		GFF4287	0.24	-0.2
4,298,051	-		GFF4287	0.24	+0.7
4,298,051	-		GFF4287	0.24	-0.3
4,298,051	-		GFF4287	0.24	-0.3
4,298,051	-		GFF4287	0.24	+1.5
4,298,051	-		GFF4287	0.24	-0.9
4,298,051	-		GFF4287	0.24	-1.5
4,298,051	-		GFF4287	0.24	+0.4
4,298,051	-		GFF4287	0.24	+0.1
4,298,051	-		GFF4287	0.24	+0.5
4,298,051	-		GFF4287	0.24	-0.4
4,298,051	-		GFF4287	0.24	+1.0
4,298,053	+		GFF4287	0.24	-1.2
4,298,053	+		GFF4287	0.24	-0.4
4,298,059	+		GFF4287	0.25	-2.2
4,298,059	-		GFF4287	0.25	+0.5
4,298,061	-		GFF4287	0.25	-0.7
4,298,061	-		GFF4287	0.25	-1.8
4,298,061	-		GFF4287	0.25	+0.3
4,298,064	-		GFF4287	0.26	-1.5
4,298,069	-		GFF4287	0.27	-0.1
4,298,071	+		GFF4287	0.27	+0.5
4,298,079	-		GFF4287	0.28	-0.2
4,298,090	+		GFF4287	0.30	-0.1
4,298,116	+		GFF4287	0.34	+0.2
4,298,123	-		GFF4287	0.35	+0.9
4,298,145	+		GFF4287	0.39	+0.2
4,298,146	-		GFF4287	0.39	+0.2
4,298,157	+		GFF4287	0.41	-1.6
4,298,165	-		GFF4287	0.42	+0.8
4,298,176	+		GFF4287	0.44	+0.3
4,298,176	+		GFF4287	0.44	-0.2
4,298,181	+		GFF4287	0.44	-0.5
4,298,184	-		GFF4287	0.45	-0.8
4,298,184	-		GFF4287	0.45	-2.5
4,298,184	-		GFF4287	0.45	+0.8
4,298,184	-		GFF4287	0.45	-0.4
4,298,186	+		GFF4287	0.45	+0.2
4,298,186	+		GFF4287	0.45	-0.6
4,298,186	+		GFF4287	0.45	+0.4
4,298,194	-		GFF4287	0.46	+0.5
4,298,194	-		GFF4287	0.46	-0.7
4,298,194	-		GFF4287	0.46	-0.3
4,298,194	-		GFF4287	0.46	-0.0
4,298,194	-		GFF4287	0.46	-0.1
4,298,194	-		GFF4287	0.46	-0.7
4,298,194	-		GFF4287	0.46	-0.0
4,298,216	-		GFF4287	0.50	-1.2
4,298,218	+		GFF4287	0.50	+1.0
4,298,226	-		GFF4287	0.52	+0.0
4,298,239	-		GFF4287	0.54	+0.1
4,298,270	-		GFF4287	0.58	-0.0
4,298,288	+		GFF4287	0.61	-2.1
4,298,288	+		GFF4287	0.61	-2.2
4,298,288	+		GFF4287	0.61	-0.7
4,298,288	+		GFF4287	0.61	-0.6
4,298,288	+		GFF4287	0.61	+1.0
4,298,288	+		GFF4287	0.61	-0.7
4,298,288	+		GFF4287	0.61	-0.3
4,298,288	+		GFF4287	0.61	-0.9
4,298,288	+		GFF4287	0.61	+0.9
4,298,288	+		GFF4287	0.61	-0.4
4,298,288	+		GFF4287	0.61	-0.0
4,298,288	+		GFF4287	0.61	+0.1
4,298,288	+		GFF4287	0.61	-0.6
4,298,288	+		GFF4287	0.61	-0.2
4,298,288	+		GFF4287	0.61	-0.9
4,298,288	+		GFF4287	0.61	-1.0
4,298,288	+		GFF4287	0.61	+0.5
4,298,288	+		GFF4287	0.61	+1.1
4,298,288	+		GFF4287	0.61	+1.5
4,298,293	+		GFF4287	0.62	-0.8
4,298,296	-		GFF4287	0.63	+0.3
4,298,296	-		GFF4287	0.63	-1.1
4,298,296	-		GFF4287	0.63	-0.3
4,298,296	-		GFF4287	0.63	-0.2
4,298,296	-		GFF4287	0.63	-1.0
4,298,296	-		GFF4287	0.63	-0.5
4,298,296	-		GFF4287	0.63	-0.4
4,298,296	-		GFF4287	0.63	-0.7
4,298,296	-		GFF4287	0.63	-1.5
4,298,296	-		GFF4287	0.63	-1.4
4,298,296	-		GFF4287	0.63	-0.4
4,298,296	-		GFF4287	0.63	-2.2
4,298,296	-		GFF4287	0.63	-0.2
4,298,296	-		GFF4287	0.63	+0.7
4,298,298	+		GFF4287	0.63	+0.8
4,298,301	-		GFF4287	0.63	-0.1
4,298,304	+		GFF4287	0.64	-0.8
4,298,347	+		GFF4287	0.71	-0.6
4,298,347	+		GFF4287	0.71	-0.3
4,298,354	-		GFF4287	0.72	-0.3
4,298,355	-		GFF4287	0.72	-0.7
4,298,355	-		GFF4287	0.72	-2.1
4,298,355	-		GFF4287	0.72	-1.3
4,298,355	-		GFF4287	0.72	-0.7
4,298,355	-		GFF4287	0.72	-1.4
4,298,374	-		GFF4287	0.75	-0.7
4,298,388	-		GFF4287	0.77	+0.4
4,298,392	-		GFF4287	0.78	+0.1
4,298,425	-		GFF4287	0.83	-0.0
4,298,425	-		GFF4287	0.83	-2.2
4,298,457	+		GFF4287	0.88	+0.1
4,298,458	-		GFF4287	0.88	-2.2
4,298,458	-		GFF4287	0.88	-0.4
4,298,473	+				-0.9
4,298,487	+				+0.6
4,298,499	+				+0.5
4,298,499	+				-0.3
4,298,507	-				+1.1
4,298,507	-				+0.3
4,298,507	-				+0.7
4,298,540	+				-0.9
4,298,540	+				-2.3
4,298,548	-				+0.5
4,298,553	-				-0.4
4,298,553	-				-0.3
4,298,553	-				+0.5
4,298,555	+				-0.1
4,298,557	-				-0.2
4,298,576	-				-1.1
4,298,595	+		GFF4288	0.12	-0.2
4,298,595	+		GFF4288	0.12	-0.8
4,298,609	-		GFF4288	0.15	-1.0
4,298,616	+		GFF4288	0.16	+0.4
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