Strain Fitness in Sphingobium sp. HT1-2 around GFF4282

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
4,293,626	-		GFF4281	0.11	+0.4
4,293,639	+		GFF4281	0.12	-0.4
4,293,639	+		GFF4281	0.12	+0.3
4,293,639	+		GFF4281	0.12	-0.5
4,293,639	+		GFF4281	0.12	+0.6
4,293,639	+		GFF4281	0.12	+0.1
4,293,646	+		GFF4281	0.13	-1.2
4,293,646	+		GFF4281	0.13	-0.5
4,293,647	-		GFF4281	0.13	+0.7
4,293,647	-		GFF4281	0.13	-0.2
4,293,647	-		GFF4281	0.13	+0.5
4,293,647	-		GFF4281	0.13	+0.0
4,293,647	-		GFF4281	0.13	-1.7
4,293,647	-		GFF4281	0.13	-0.7
4,293,654	-		GFF4281	0.14	-0.3
4,293,684	-		GFF4281	0.17	+0.2
4,293,711	-		GFF4281	0.19	-0.4
4,293,721	-		GFF4281	0.20	-0.3
4,293,729	+		GFF4281	0.21	-2.4
4,293,741	+		GFF4281	0.22	+1.1
4,293,749	+		GFF4281	0.23	-0.2
4,293,755	-		GFF4281	0.23	-1.0
4,293,755	-		GFF4281	0.23	-0.3
4,293,765	+		GFF4281	0.24	-0.4
4,293,774	+		GFF4281	0.25	+1.0
4,293,781	+		GFF4281	0.26	+0.5
4,293,781	+		GFF4281	0.26	-0.7
4,293,782	-		GFF4281	0.26	-0.8
4,293,787	-		GFF4281	0.26	-0.0
4,293,787	-		GFF4281	0.26	-1.1
4,293,798	-		GFF4281	0.27	-0.2
4,293,802	-		GFF4281	0.28	+0.4
4,293,815	+		GFF4281	0.29	+0.1
4,293,815	+		GFF4281	0.29	-0.3
4,293,822	-		GFF4281	0.30	+0.6
4,293,823	-		GFF4281	0.30	+1.1
4,293,823	-		GFF4281	0.30	-2.7
4,293,823	-		GFF4281	0.30	-0.7
4,293,823	-		GFF4281	0.30	-0.6
4,293,823	-		GFF4281	0.30	+0.4
4,293,823	-		GFF4281	0.30	-0.5
4,293,823	-		GFF4281	0.30	-1.0
4,293,824	+		GFF4281	0.30	+0.8
4,293,824	+		GFF4281	0.30	-2.1
4,293,824	+		GFF4281	0.30	+0.1
4,293,826	+		GFF4281	0.30	-1.9
4,293,832	-		GFF4281	0.31	-0.4
4,293,832	-		GFF4281	0.31	+0.2
4,293,832	-		GFF4281	0.31	+0.1
4,293,832	-		GFF4281	0.31	+0.9
4,293,832	-		GFF4281	0.31	-0.5
4,293,832	-		GFF4281	0.31	-0.2
4,293,839	-		GFF4281	0.31	-0.3
4,293,861	+		GFF4281	0.33	+0.8
4,293,861	+		GFF4281	0.33	+0.3
4,293,871	+		GFF4281	0.34	-1.7
4,293,943	+		GFF4281	0.41	+0.7
4,293,946	-		GFF4281	0.41	-1.5
4,293,965	+		GFF4281	0.43	-1.1
4,293,973	-		GFF4281	0.44	+0.9
4,293,973	-		GFF4281	0.44	-0.8
4,293,975	+		GFF4281	0.44	-0.5
4,293,975	+		GFF4281	0.44	+0.2
4,293,975	+		GFF4281	0.44	+0.0
4,293,975	+		GFF4281	0.44	-0.6
4,293,975	+		GFF4281	0.44	-1.3
4,293,975	+		GFF4281	0.44	+1.1
4,293,983	-		GFF4281	0.45	+0.3
4,293,983	-		GFF4281	0.45	-1.4
4,293,983	-		GFF4281	0.45	-0.9
4,293,983	-		GFF4281	0.45	+2.1
4,294,002	+		GFF4281	0.47	-0.2
4,294,023	-		GFF4281	0.49	-0.2
4,294,042	-		GFF4281	0.50	-1.4
4,294,049	+		GFF4281	0.51	-1.3
4,294,057	-		GFF4281	0.52	+0.6
4,294,059	+		GFF4281	0.52	-0.9
4,294,059	+		GFF4281	0.52	+0.3
4,294,059	+		GFF4281	0.52	-1.8
4,294,077	+		GFF4281	0.54	-0.6
4,294,079	+		GFF4281	0.54	-0.5
4,294,079	+		GFF4281	0.54	-1.2
4,294,085	-		GFF4281	0.55	-0.5
4,294,085	-		GFF4281	0.55	-0.5
4,294,085	-		GFF4281	0.55	-0.5
4,294,085	-		GFF4281	0.55	+0.2
4,294,085	-		GFF4281	0.55	+0.4
4,294,087	-		GFF4281	0.55	+0.6
4,294,092	+		GFF4281	0.55	+0.4
4,294,151	+		GFF4281	0.61	-1.9
4,294,165	+		GFF4281	0.62	+0.3
4,294,165	+		GFF4281	0.62	-2.0
4,294,165	+		GFF4281	0.62	+1.5
4,294,172	+		GFF4281	0.63	-1.5
4,294,173	-		GFF4281	0.63	-0.6
4,294,173	-		GFF4281	0.63	-1.9
4,294,173	-		GFF4281	0.63	-1.7
4,294,173	-		GFF4281	0.63	-0.1
4,294,173	-		GFF4281	0.63	-0.3
4,294,173	-		GFF4281	0.63	-0.8
4,294,173	-		GFF4281	0.63	-0.7
4,294,178	+		GFF4281	0.63	+0.9
4,294,181	-		GFF4281	0.64	+0.2
4,294,181	-		GFF4281	0.64	+0.6
4,294,181	-		GFF4281	0.64	+0.3
4,294,186	-		GFF4281	0.64	+0.3
4,294,191	-		GFF4281	0.65	-0.8
4,294,196	+		GFF4281	0.65	+1.0
4,294,204	-		GFF4281	0.66	-0.5
4,294,205	-		GFF4281	0.66	+0.3
4,294,209	+		GFF4281	0.66	-0.8
4,294,217	+		GFF4281	0.67	-0.8
4,294,217	+		GFF4281	0.67	-0.1
4,294,226	+		GFF4281	0.68	+1.0
4,294,230	-		GFF4281	0.68	-1.1
4,294,234	-		GFF4281	0.69	-0.2
4,294,235	-		GFF4281	0.69	+0.2
4,294,247	+		GFF4281	0.70	-0.6
4,294,264	-		GFF4281	0.71	-0.3
4,294,268	+		GFF4281	0.72	-0.6
4,294,273	+		GFF4281	0.72	-0.7
4,294,273	+		GFF4281	0.72	-0.3
4,294,278	+		GFF4281	0.73	-0.7
4,294,278	+		GFF4281	0.73	+0.1
4,294,279	+		GFF4281	0.73	-0.1
4,294,283	+		GFF4281	0.73	-0.2
4,294,286	-		GFF4281	0.74	+0.9
4,294,286	-		GFF4281	0.74	-0.2
4,294,286	-		GFF4281	0.74	-1.2
4,294,288	-		GFF4281	0.74	+0.2
4,294,288	-		GFF4281	0.74	+1.2
4,294,293	+		GFF4281	0.74	-2.5
4,294,293	+		GFF4281	0.74	-0.5
4,294,296	-		GFF4281	0.75	-0.3
4,294,301	-		GFF4281	0.75	-1.7
4,294,303	+		GFF4281	0.75	-2.5
4,294,314	+		GFF4281	0.76	+0.0
4,294,327	-		GFF4281	0.77	-1.0
4,294,344	+		GFF4281	0.79	-0.7
4,294,344	+		GFF4281	0.79	+0.8
4,294,347	-		GFF4281	0.79	-0.5
4,294,362	-		GFF4281	0.81	-0.8
4,294,362	-		GFF4281	0.81	-0.1
4,294,367	+		GFF4281	0.81	-0.2
4,294,367	+		GFF4281	0.81	+0.3
4,294,367	+		GFF4281	0.81	-0.1
4,294,367	+		GFF4281	0.81	+0.9
4,294,370	-		GFF4281	0.82	+0.5
4,294,375	-		GFF4281	0.82	-0.2
4,294,375	-		GFF4281	0.82	+0.8
4,294,375	-		GFF4281	0.82	+0.1
4,294,375	-		GFF4281	0.82	+1.4
4,294,389	+		GFF4281	0.83	-0.3
4,294,401	+		GFF4281	0.84	-2.5
4,294,421	+		GFF4281	0.86	-0.5
4,294,433	-		GFF4281	0.88	+1.3
4,294,448	+		GFF4281	0.89	-2.2
4,294,456	-		GFF4281	0.90	-0.5
4,294,458	+		GFF4281	0.90	-0.5
4,294,462	+				-0.5
4,294,466	-				-1.7
4,294,466	-				-0.6
4,294,466	-				-2.4
4,294,471	-				+0.1
4,294,471	-				-0.6
4,294,482	+				-1.8
4,294,485	-				-1.2
4,294,487	+				+0.6
4,294,487	+				+0.5
4,294,487	+				+0.3
4,294,495	-				+0.1
4,294,495	-				+1.5
4,294,495	-				+0.6
4,294,495	-				+0.8
4,294,508	+				-1.7
4,294,508	+				+1.0
4,294,508	+				-0.6
4,294,508	+				+1.3
4,294,508	+				+0.5
4,294,516	-				-0.7
4,294,516	-				+0.1
4,294,516	-				-1.7
4,294,516	-				+0.8
4,294,516	-				+1.0
4,294,516	-				-0.1
4,294,535	-				+0.1
4,294,535	-				-0.6
4,294,544	+				+0.8
4,294,562	+				-1.8
4,294,562	-				-0.5
4,294,574	+				-1.2
4,294,592	-				+0.4
4,294,618	-				-1.5
4,294,624	+				-0.2
4,294,624	+				+1.0
4,294,624	+				-0.9
4,294,624	+				-0.0
4,294,632	-				-0.8
4,294,632	-				+0.9
4,294,632	-				-1.2
4,294,632	-				-0.1
4,294,639	+				-2.2
4,294,639	+				+0.3
4,294,647	-				+0.2
4,294,647	-				+0.1
4,294,665	-				+1.1
4,294,676	+				+0.6
4,294,684	-		GFF4282	0.11	-2.5
4,294,694	+		GFF4282	0.13	-0.3
4,294,694	+		GFF4282	0.13	+0.2
4,294,694	+		GFF4282	0.13	-1.7
4,294,694	+		GFF4282	0.13	-0.5
4,294,702	-		GFF4282	0.15	+0.1
4,294,702	-		GFF4282	0.15	+0.6
4,294,702	-		GFF4282	0.15	-0.8
4,294,709	+		GFF4282	0.16	-0.7
4,294,712	-		GFF4282	0.17	-0.3
4,294,713	-		GFF4282	0.17	-0.3
4,294,729	+		GFF4282	0.20	+0.3
4,294,731	+		GFF4282	0.21	-0.8
4,294,737	-		GFF4282	0.22	+0.3
4,294,737	-		GFF4282	0.22	-0.2
4,294,756	+		GFF4282	0.25	+0.0
4,294,764	-		GFF4282	0.27	+0.2
4,294,782	-		GFF4282	0.31	-0.8
4,294,782	-		GFF4282	0.31	+0.4
4,294,787	-		GFF4282	0.32	+1.4
4,294,792	+		GFF4282	0.33	-0.2
4,294,792	-		GFF4282	0.33	+0.5
4,294,800	-		GFF4282	0.34	-0.3
4,294,800	-		GFF4282	0.34	-1.1
4,294,800	-		GFF4282	0.34	+0.3
4,294,800	-		GFF4282	0.34	+0.6
4,294,820	-		GFF4282	0.38	-1.2
4,294,849	+		GFF4282	0.44	-0.2
4,294,857	-		GFF4282	0.45	-0.9
4,294,857	-		GFF4282	0.45	-2.2
4,294,885	-		GFF4282	0.51	+0.2
4,294,890	-		GFF4282	0.52	+0.3
4,294,894	+		GFF4282	0.53	+1.3
4,294,902	-		GFF4282	0.54	-0.1
4,294,916	+		GFF4282	0.57	+0.1
4,294,926	+		GFF4282	0.59	-1.2
4,294,931	+		GFF4282	0.60	+0.1
4,294,941	-		GFF4282	0.62	+0.4
4,294,944	-		GFF4282	0.62	-0.5
4,294,989	+		GFF4282	0.71	-0.9
4,294,995	+		GFF4282	0.72	+1.2
4,294,998	-		GFF4282	0.73	+0.8
4,294,998	-		GFF4282	0.73	+0.7
4,295,011	+		GFF4282	0.75	+0.9
4,295,019	-		GFF4282	0.77	+0.6
4,295,019	-		GFF4282	0.77	-0.1
4,295,029	+		GFF4282	0.79	+0.3
4,295,029	+		GFF4282	0.79	+1.0
4,295,029	+		GFF4282	0.79	+0.1
4,295,037	-		GFF4282	0.81	+0.5
4,295,037	-		GFF4282	0.81	+0.5
4,295,037	-		GFF4282	0.81	+0.9
4,295,037	-		GFF4282	0.81	+0.9
4,295,056	-		GFF4282	0.84	-1.7
4,295,064	+		GFF4282	0.86	-0.2
4,295,064	+		GFF4282	0.86	+0.8
4,295,064	+		GFF4282	0.86	+0.2
4,295,064	+		GFF4282	0.86	+0.8
4,295,065	+		GFF4282	0.86	+0.7
4,295,065	+		GFF4282	0.86	-0.0
4,295,068	-		GFF4282	0.87	+1.2
4,295,068	-		GFF4282	0.87	-0.8
4,295,072	-		GFF4282	0.87	-0.4
4,295,072	-		GFF4282	0.87	-1.5
4,295,072	-		GFF4282	0.87	-1.8
4,295,073	-		GFF4282	0.88	+0.2
4,295,073	-		GFF4282	0.88	+0.8
4,295,086	+				-1.5
4,295,086	+				-0.7
4,295,092	+				-0.5
4,295,118	+				-0.8
4,295,136	+				-0.5
4,295,136	+				-2.2
4,295,138	+				-0.7
4,295,144	+				-2.3
4,295,144	+				+0.0
4,295,144	-				-0.0
4,295,144	-				+0.0
4,295,152	-				-0.8
4,295,211	-				+1.1
4,295,229	+				-0.8
4,295,229	+				+1.3
4,295,229	+				-0.1
4,295,229	+				-0.8
4,295,229	+				-1.8
4,295,229	+				-0.6
4,295,229	+				+1.6
4,295,229	+				-0.7
4,295,237	-				+0.0
4,295,237	-				+0.7
4,295,237	-				+0.2
4,295,237	-				-0.0
4,295,237	-				-0.9
4,295,237	-				+0.2
4,295,237	-				-0.7
4,295,237	-				+0.4
4,295,237	-				+0.1
4,295,274	-		GFF4283	0.27	+0.3
4,295,288	+		GFF4283	0.35	+1.2
4,295,292	-		GFF4283	0.38	+0.6
4,295,300	-		GFF4283	0.43	-1.7
4,295,309	+		GFF4283	0.48	+0.2
4,295,332	+		GFF4283	0.62	+0.0
4,295,332	+		GFF4283	0.62	-1.5
4,295,332	+		GFF4283	0.62	+0.4
4,295,340	-		GFF4283	0.67	-0.7
4,295,368	-		GFF4283	0.85	-0.3
4,295,372	+		GFF4283	0.87	+0.4
4,295,372	+		GFF4283	0.87	+0.3
4,295,372	+		GFF4283	0.87	-0.1
4,295,380	-				+0.7
4,295,402	-				-0.3
4,295,402	-				-1.7
4,295,424	-				+1.3
4,295,463	+				-0.9
4,295,468	+				+0.4
4,295,472	-				+0.1
4,295,478	-				+0.2
4,295,506	-				+1.2
4,295,511	-				+0.4
4,295,511	-				+0.6
4,295,525	+				-0.1
4,295,531	-				-0.6
4,295,531	-				-0.3
4,295,569	+				+0.4
4,295,572	-				-0.4
4,295,572	-				+0.3
4,295,578	+				-0.3
4,295,588	+				+0.5
4,295,593	+				-0.1
4,295,596	-				-1.5
4,295,599	+				-2.8
4,295,601	-				-0.5
4,295,611	+				-0.6
4,295,611	+				-0.3
4,295,639	+				+1.6
4,295,643	-				+0.5
4,295,643	-				-0.3
4,295,653	-				+1.2
4,295,656	+				-0.5
4,295,663	+				+0.3
4,295,664	-				+1.1
4,295,697	+				+0.8
4,295,707	+				-1.3
4,295,715	-				+1.8
4,295,720	-				-0.1
4,295,737	+				-1.9
4,295,737	+				-0.5
4,295,745	-		GFF4284	0.10	-1.5
4,295,745	-		GFF4284	0.10	-0.9
4,295,745	-		GFF4284	0.10	-0.1
4,295,751	+		GFF4284	0.11	+1.0
4,295,753	+		GFF4284	0.11	-0.3
4,295,753	+		GFF4284	0.11	-1.3
4,295,754	-		GFF4284	0.11	-1.1
4,295,761	-		GFF4284	0.11	+0.8
4,295,761	-		GFF4284	0.11	+0.8
4,295,763	+		GFF4284	0.12	-1.3
4,295,763	+		GFF4284	0.12	-0.6
4,295,763	+		GFF4284	0.12	+0.2
4,295,765	+		GFF4284	0.12	+0.7
4,295,771	-		GFF4284	0.12	-1.7
4,295,775	+		GFF4284	0.12	-0.9
4,295,785	+		GFF4284	0.13	-0.2
4,295,785	+		GFF4284	0.13	-0.1
4,295,785	+		GFF4284	0.13	-0.2
4,295,785	+		GFF4284	0.13	-1.0
4,295,792	-		GFF4284	0.14	+0.8
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