Strain Fitness in Sphingobium sp. HT1-2 around GFF4279

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
4,290,768	+		GFF4275	0.87	+1.5
4,290,776	-		GFF4275	0.88	-2.1
4,290,776	-		GFF4275	0.88	-0.0
4,290,777	-		GFF4275	0.88	+0.6
4,290,778	+		GFF4275	0.88	-0.7
4,290,778	+		GFF4275	0.88	-0.8
4,290,779	+		GFF4275	0.88	-0.9
4,290,779	+		GFF4275	0.88	+0.5
4,290,779	+		GFF4275	0.88	-1.0
4,290,779	+		GFF4275	0.88	-1.0
4,290,779	+		GFF4275	0.88	-0.1
4,290,779	+		GFF4275	0.88	+0.5
4,290,786	-		GFF4275	0.88	-1.3
4,290,786	-		GFF4275	0.88	-0.3
4,290,787	-		GFF4275	0.88	-0.3
4,290,787	-		GFF4275	0.88	-0.3
4,290,790	+		GFF4275	0.89	-0.7
4,290,790	+		GFF4275	0.89	-0.4
4,290,790	+		GFF4275	0.89	-3.0
4,290,790	+		GFF4275	0.89	+0.9
4,290,790	+		GFF4275	0.89	+1.2
4,290,790	+		GFF4275	0.89	-1.2
4,290,798	-		GFF4275	0.89	+1.2
4,290,798	-		GFF4275	0.89	-0.7
4,290,798	-		GFF4275	0.89	-0.0
4,290,798	-		GFF4275	0.89	+0.1
4,290,807	+		GFF4275	0.90	+1.3
4,290,808	+		GFF4275	0.90	-0.5
4,290,816	-				+2.1
4,290,816	-				+1.5
4,290,816	-				-0.5
4,290,835	+				+0.3
4,290,843	-				+0.3
4,290,843	-				+0.0
4,290,850	+				-1.5
4,290,850	+				+1.2
4,290,850	+				+0.9
4,290,853	-				-0.6
4,290,873	+				-1.3
4,290,873	+				+0.4
4,290,873	+				-0.2
4,290,881	-				-1.2
4,290,881	-				-0.2
4,290,881	-				+0.0
4,290,883	+				-0.7
4,290,891	-				-0.4
4,290,891	-				-1.1
4,290,891	-				+1.0
4,290,905	+				+0.1
4,290,918	+				+0.3
4,290,923	+				-0.2
4,290,931	-				-1.1
4,290,931	-				+0.6
4,290,931	-				+0.8
4,290,933	+				+0.2
4,290,933	+				-1.2
4,290,933	+				+0.1
4,290,933	+				-1.1
4,290,933	+				-0.7
4,290,936	-				+0.9
4,290,941	+				-0.3
4,290,941	-				+0.4
4,290,941	-				+0.5
4,290,941	-				-1.6
4,290,941	-				-1.2
4,290,941	-				-0.7
4,290,953	+				-0.9
4,290,987	-				+0.7
4,291,001	-				-2.2
4,291,023	+				-0.8
4,291,023	+				-0.8
4,291,031	-				+0.2
4,291,044	+				-1.1
4,291,055	+				-1.2
4,291,055	+				+0.7
4,291,063	-				+0.2
4,291,065	+				-0.4
4,291,075	+				-1.1
4,291,089	+				+0.1
4,291,118	-				+1.1
4,291,125	+				-0.4
4,291,125	+				-0.8
4,291,125	+				-0.9
4,291,125	+				-0.1
4,291,126	+				-1.5
4,291,131	+		GFF4276	0.10	+0.3
4,291,133	-		GFF4276	0.12	-1.4
4,291,133	-		GFF4276	0.12	-0.1
4,291,134	-		GFF4276	0.12	-1.8
4,291,134	-		GFF4276	0.12	+0.4
4,291,172	-		GFF4276	0.44	+0.3
4,291,203	+		GFF4276	0.70	+1.2
4,291,203	+		GFF4276	0.70	-0.9
4,291,209	+		GFF4276	0.75	+0.7
4,291,210	-		GFF4276	0.76	-0.4
4,291,218	+		GFF4276	0.82	+0.2
4,291,220	-		GFF4276	0.84	+0.9
4,291,220	-		GFF4276	0.84	+0.1
4,291,226	-		GFF4276	0.89	+0.3
4,291,226	-		GFF4276	0.89	-1.7
4,291,233	-				-0.2
4,291,233	-				+0.1
4,291,236	+				-1.8
4,291,236	+				-1.0
4,291,236	+				-1.0
4,291,236	+				+1.1
4,291,236	+				+0.0
4,291,244	-				-0.5
4,291,244	-				-0.1
4,291,244	-				+0.1
4,291,256	-				-0.5
4,291,257	+				-0.0
4,291,260	+		GFF4277	0.11	+0.6
4,291,263	-		GFF4277	0.12	+0.8
4,291,268	-		GFF4277	0.14	-0.0
4,291,268	-		GFF4277	0.14	-0.7
4,291,270	+		GFF4277	0.15	-0.9
4,291,270	+		GFF4277	0.15	-0.9
4,291,270	+		GFF4277	0.15	-0.5
4,291,270	+		GFF4277	0.15	-0.7
4,291,270	+		GFF4277	0.15	+0.3
4,291,270	+		GFF4277	0.15	-1.1
4,291,270	+		GFF4277	0.15	-0.2
4,291,270	+		GFF4277	0.15	-0.0
4,291,270	+		GFF4277	0.15	-0.0
4,291,270	+		GFF4277	0.15	+0.7
4,291,270	+		GFF4277	0.15	-0.0
4,291,270	+		GFF4277	0.15	-0.3
4,291,270	+		GFF4277	0.15	+0.2
4,291,270	+		GFF4277	0.15	+1.1
4,291,270	+		GFF4277	0.15	-0.2
4,291,278	-		GFF4277	0.18	+0.3
4,291,278	-		GFF4277	0.18	-0.2
4,291,278	-		GFF4277	0.18	+0.6
4,291,278	-		GFF4277	0.18	+0.8
4,291,278	-		GFF4277	0.18	-0.7
4,291,278	-		GFF4277	0.18	+0.2
4,291,278	-		GFF4277	0.18	-1.9
4,291,278	-		GFF4277	0.18	+0.6
4,291,278	-		GFF4277	0.18	+0.3
4,291,314	+		GFF4277	0.33	-0.2
4,291,322	-		GFF4277	0.37	+0.2
4,291,329	+		GFF4277	0.40	-0.2
4,291,332	-		GFF4277	0.41	-0.4
4,291,344	+		GFF4277	0.46	+0.4
4,291,352	-		GFF4277	0.49	-0.2
4,291,362	+		GFF4277	0.54	-0.1
4,291,385	+		GFF4277	0.63	+0.6
4,291,410	+		GFF4277	0.74	-2.1
4,291,410	+		GFF4277	0.74	-1.1
4,291,410	+		GFF4277	0.74	-0.2
4,291,412	+		GFF4277	0.75	-0.7
4,291,412	+		GFF4277	0.75	+0.1
4,291,415	+		GFF4277	0.76	-0.8
4,291,418	-		GFF4277	0.77	-1.6
4,291,420	-		GFF4277	0.78	+0.0
4,291,433	+		GFF4277	0.84	+0.4
4,291,433	+		GFF4277	0.84	+0.7
4,291,433	+		GFF4277	0.84	+0.9
4,291,433	+		GFF4277	0.84	-0.4
4,291,441	-		GFF4277	0.87	+0.3
4,291,441	-		GFF4277	0.87	-1.8
4,291,441	-		GFF4277	0.87	+0.9
4,291,441	-		GFF4277	0.87	-0.8
4,291,464	-				+0.3
4,291,474	-				+0.3
4,291,511	+		GFF4278	0.15	+0.8
4,291,511	+		GFF4278	0.15	+0.5
4,291,519	-		GFF4278	0.18	-2.5
4,291,519	-		GFF4278	0.18	-0.7
4,291,536	-		GFF4278	0.24	-2.1
4,291,537	+		GFF4278	0.24	-0.9
4,291,537	+		GFF4278	0.24	-1.3
4,291,545	-		GFF4278	0.27	+0.3
4,291,545	-		GFF4278	0.27	-1.9
4,291,571	+		GFF4278	0.36	+1.3
4,291,576	+		GFF4278	0.38	+0.6
4,291,579	+		GFF4278	0.39	-0.8
4,291,581	+		GFF4278	0.39	+0.1
4,291,581	+		GFF4278	0.39	-0.5
4,291,601	+		GFF4278	0.46	-0.1
4,291,601	+		GFF4278	0.46	-0.3
4,291,609	-		GFF4278	0.49	-2.2
4,291,634	+		GFF4278	0.58	-2.2
4,291,671	+		GFF4278	0.70	-0.2
4,291,682	-		GFF4278	0.74	-0.1
4,291,684	-		GFF4278	0.75	-0.1
4,291,696	-		GFF4278	0.79	+0.2
4,291,727	-				+1.4
4,291,784	+				+0.5
4,291,805	+		GFF4279	0.11	-2.2
4,291,810	+		GFF4279	0.12	+0.3
4,291,810	+		GFF4279	0.12	-1.5
4,291,813	-		GFF4279	0.13	-3.4
4,291,818	-		GFF4279	0.14	+0.3
4,291,818	-		GFF4279	0.14	+0.4
4,291,831	+		GFF4279	0.16	-0.4
4,291,831	+		GFF4279	0.16	+1.2
4,291,831	+		GFF4279	0.16	-0.2
4,291,831	+		GFF4279	0.16	-0.7
4,291,831	+		GFF4279	0.16	-0.9
4,291,831	+		GFF4279	0.16	-1.9
4,291,836	+		GFF4279	0.17	-0.9
4,291,837	-		GFF4279	0.17	+0.6
4,291,839	+		GFF4279	0.18	+1.4
4,291,839	-		GFF4279	0.18	-0.7
4,291,839	-		GFF4279	0.18	-0.3
4,291,839	-		GFF4279	0.18	+0.2
4,291,839	-		GFF4279	0.18	+0.9
4,291,839	-		GFF4279	0.18	+0.4
4,291,839	-		GFF4279	0.18	-0.7
4,291,839	-		GFF4279	0.18	-0.6
4,291,839	-		GFF4279	0.18	+0.3
4,291,839	-		GFF4279	0.18	+1.4
4,291,839	-		GFF4279	0.18	-0.4
4,291,839	-		GFF4279	0.18	+0.1
4,291,844	+		GFF4279	0.19	+0.3
4,291,844	+		GFF4279	0.19	+0.2
4,291,905	-		GFF4279	0.31	+0.5
4,291,983	-		GFF4279	0.46	-0.4
4,291,987	+		GFF4279	0.47	-0.6
4,292,002	+		GFF4279	0.50	-2.1
4,292,008	+		GFF4279	0.51	-0.3
4,292,015	-		GFF4279	0.52	+0.2
4,292,064	-		GFF4279	0.62	+0.3
4,292,077	+		GFF4279	0.65	-0.1
4,292,077	+		GFF4279	0.65	-0.0
4,292,077	+		GFF4279	0.65	-0.8
4,292,077	+		GFF4279	0.65	-0.1
4,292,077	+		GFF4279	0.65	-0.2
4,292,077	+		GFF4279	0.65	-0.4
4,292,077	+		GFF4279	0.65	-0.8
4,292,080	-		GFF4279	0.65	+0.0
4,292,085	-		GFF4279	0.66	+0.2
4,292,085	-		GFF4279	0.66	+0.0
4,292,085	-		GFF4279	0.66	-1.5
4,292,085	-		GFF4279	0.66	-0.4
4,292,085	-		GFF4279	0.66	+0.1
4,292,096	+		GFF4279	0.68	-0.1
4,292,098	+		GFF4279	0.69	-1.5
4,292,098	+		GFF4279	0.69	+0.0
4,292,098	+		GFF4279	0.69	-0.4
4,292,099	-		GFF4279	0.69	-2.1
4,292,103	+		GFF4279	0.70	-1.7
4,292,103	+		GFF4279	0.70	+0.2
4,292,103	+		GFF4279	0.70	-1.2
4,292,103	+		GFF4279	0.70	-0.4
4,292,103	+		GFF4279	0.70	+1.0
4,292,103	+		GFF4279	0.70	-0.1
4,292,103	+		GFF4279	0.70	+1.6
4,292,103	+		GFF4279	0.70	-0.1
4,292,103	+		GFF4279	0.70	+0.4
4,292,103	+		GFF4279	0.70	-0.4
4,292,106	-		GFF4279	0.70	-0.6
4,292,106	-		GFF4279	0.70	+0.1
4,292,106	-		GFF4279	0.70	-1.8
4,292,106	-		GFF4279	0.70	+0.5
4,292,108	+		GFF4279	0.71	+0.8
4,292,108	+		GFF4279	0.71	-0.6
4,292,108	+		GFF4279	0.71	+0.1
4,292,111	-		GFF4279	0.71	-0.9
4,292,111	-		GFF4279	0.71	-1.2
4,292,111	-		GFF4279	0.71	-2.1
4,292,111	-		GFF4279	0.71	+0.6
4,292,111	-		GFF4279	0.71	+0.9
4,292,111	-		GFF4279	0.71	+0.2
4,292,111	-		GFF4279	0.71	+1.4
4,292,111	-		GFF4279	0.71	-0.2
4,292,111	-		GFF4279	0.71	-0.8
4,292,111	-		GFF4279	0.71	-0.3
4,292,111	-		GFF4279	0.71	+0.2
4,292,111	-		GFF4279	0.71	-1.1
4,292,111	-		GFF4279	0.71	+0.7
4,292,111	-		GFF4279	0.71	+0.7
4,292,111	-		GFF4279	0.71	-0.9
4,292,111	-		GFF4279	0.71	+0.1
4,292,116	-		GFF4279	0.72	+0.2
4,292,116	-		GFF4279	0.72	+0.8
4,292,135	+		GFF4279	0.76	-0.7
4,292,153	-		GFF4279	0.79	+1.3
4,292,158	+		GFF4279	0.80	-1.3
4,292,158	+		GFF4279	0.80	-1.5
4,292,158	+		GFF4279	0.80	-0.8
4,292,161	-		GFF4279	0.81	-0.2
4,292,166	-		GFF4279	0.82	-1.0
4,292,166	-		GFF4279	0.82	-0.1
4,292,166	-		GFF4279	0.82	-0.8
4,292,166	-		GFF4279	0.82	+0.3
4,292,166	-		GFF4279	0.82	-0.8
4,292,166	-		GFF4279	0.82	+0.4
4,292,171	-		GFF4279	0.83	-0.1
4,292,171	-		GFF4279	0.83	+1.1
4,292,173	+		GFF4279	0.83	-0.3
4,292,173	+		GFF4279	0.83	+0.2
4,292,181	-		GFF4279	0.85	-0.8
4,292,181	-		GFF4279	0.85	+0.1
4,292,195	+		GFF4279	0.88	+1.1
4,292,198	-		GFF4279	0.88	-1.0
4,292,207	+				+0.1
4,292,208	-				-1.9
4,292,213	-				+0.8
4,292,217	+				-1.1
4,292,260	-				-0.8
4,292,278	-				-0.5
4,292,278	-				+0.5
4,292,288	-				-0.3
4,292,298	+				-0.7
4,292,298	+				+1.0
4,292,298	+				+0.9
4,292,303	+				-0.4
4,292,308	+				+1.3
4,292,308	+				-0.3
4,292,316	-				+0.6
4,292,323	+				+0.2
4,292,331	-				-1.5
4,292,331	-				-0.0
4,292,341	+				+0.0
4,292,341	+				+0.2
4,292,341	+				-1.4
4,292,341	+				-1.9
4,292,341	+				+0.3
4,292,341	+				-0.5
4,292,341	+				-0.3
4,292,341	+				+0.8
4,292,341	+				-0.2
4,292,341	+				-0.5
4,292,341	+				-0.7
4,292,347	-				-1.5
4,292,349	+				+0.8
4,292,349	-				-2.5
4,292,349	-				-1.0
4,292,349	-				+1.1
4,292,349	-				+1.1
4,292,349	-				+0.4
4,292,349	-				-1.7
4,292,349	-				+0.6
4,292,349	-				-1.0
4,292,349	-				+0.5
4,292,360	+				-2.2
4,292,365	+				+0.6
4,292,368	-				-0.9
4,292,370	+				-1.7
4,292,378	-				+0.3
4,292,378	-				-0.2
4,292,378	-				+0.6
4,292,383	+				+0.1
4,292,383	+				-0.1
4,292,383	+				-0.1
4,292,391	-				+0.1
4,292,400	+				-1.2
4,292,422	+				+1.9
4,292,430	-				-0.3
4,292,432	-				-0.2
4,292,432	-				+1.1
4,292,432	-				-0.8
4,292,476	+				-0.2
4,292,476	+				-0.4
4,292,484	-				-0.5
4,292,485	-				-0.9
4,292,501	+		GFF4280	0.11	-0.5
4,292,520	-		GFF4280	0.13	-0.2
4,292,557	+		GFF4280	0.16	-0.1
4,292,557	+		GFF4280	0.16	-0.3
4,292,562	+		GFF4280	0.17	+0.8
4,292,565	-		GFF4280	0.17	-1.8
4,292,565	-		GFF4280	0.17	-1.2
4,292,581	+		GFF4280	0.19	-0.3
4,292,583	+		GFF4280	0.19	-1.2
4,292,612	+		GFF4280	0.21	-0.4
4,292,615	+		GFF4280	0.22	+0.9
4,292,635	+		GFF4280	0.24	-1.2
4,292,639	+		GFF4280	0.24	-1.2
4,292,639	+		GFF4280	0.24	-3.2
4,292,645	+		GFF4280	0.25	+0.2
4,292,645	+		GFF4280	0.25	-0.7
4,292,645	+		GFF4280	0.25	-2.7
4,292,645	+		GFF4280	0.25	-0.8
4,292,653	-		GFF4280	0.25	+0.0
4,292,653	-		GFF4280	0.25	+0.6
4,292,655	+		GFF4280	0.25	-2.5
4,292,655	+		GFF4280	0.25	+1.1
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