Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4231 and GFF4232 are separated by 8 nucleotides GFF4232 and GFF4233 are separated by 46 nucleotides GFF4233 and GFF4234 overlap by 11 nucleotides
GFF4231 - UDP-glucuronate decarboxylase (EC 4.1.1.35), at 4,248,384 to 4,249,316
GFF4231
GFF4232 - hypothetical protein, at 4,249,325 to 4,250,164
GFF4232
GFF4233 - hypothetical protein, at 4,250,211 to 4,251,320
GFF4233
GFF4234 - hypothetical protein, at 4,251,310 to 4,254,429
GFF4234
Position (kb) 4250
4251
4252 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 4249.238 kb on - strand at 4249.276 kb on - strand at 4249.326 kb on - strand at 4249.326 kb on - strand at 4249.367 kb on - strand at 4249.415 kb on - strand, within GFF4232 at 4249.515 kb on + strand, within GFF4232 at 4249.515 kb on + strand, within GFF4232 at 4249.523 kb on - strand, within GFF4232 at 4249.523 kb on - strand, within GFF4232 at 4249.527 kb on + strand, within GFF4232 at 4249.532 kb on + strand, within GFF4232 at 4249.535 kb on - strand, within GFF4232 at 4249.535 kb on - strand, within GFF4232 at 4249.546 kb on - strand, within GFF4232 at 4249.592 kb on - strand, within GFF4232 at 4249.642 kb on + strand, within GFF4232 at 4249.667 kb on + strand, within GFF4232 at 4249.774 kb on + strand, within GFF4232 at 4249.774 kb on + strand, within GFF4232 at 4249.774 kb on + strand, within GFF4232 at 4249.774 kb on + strand, within GFF4232 at 4249.774 kb on + strand, within GFF4232 at 4249.782 kb on - strand, within GFF4232 at 4249.796 kb on + strand, within GFF4232 at 4249.796 kb on + strand, within GFF4232 at 4249.796 kb on + strand, within GFF4232 at 4249.796 kb on + strand, within GFF4232 at 4249.804 kb on - strand, within GFF4232 at 4249.804 kb on - strand, within GFF4232 at 4249.811 kb on - strand, within GFF4232 at 4249.816 kb on - strand, within GFF4232 at 4249.830 kb on + strand, within GFF4232 at 4249.833 kb on - strand, within GFF4232 at 4249.843 kb on + strand, within GFF4232 at 4249.847 kb on + strand, within GFF4232 at 4249.867 kb on + strand, within GFF4232 at 4249.874 kb on - strand, within GFF4232 at 4249.876 kb on - strand, within GFF4232 at 4249.907 kb on - strand, within GFF4232 at 4249.907 kb on - strand, within GFF4232 at 4249.907 kb on - strand, within GFF4232 at 4249.908 kb on - strand, within GFF4232 at 4249.913 kb on - strand, within GFF4232 at 4249.931 kb on + strand, within GFF4232 at 4249.977 kb on - strand, within GFF4232 at 4250.005 kb on + strand, within GFF4232 at 4250.023 kb on - strand, within GFF4232 at 4250.049 kb on + strand, within GFF4232 at 4250.057 kb on - strand, within GFF4232 at 4250.081 kb on - strand at 4250.088 kb on - strand at 4250.102 kb on + strand at 4250.112 kb on - strand at 4250.121 kb on - strand at 4250.121 kb on - strand at 4250.143 kb on + strand at 4250.151 kb on - strand at 4250.165 kb on - strand at 4250.238 kb on - strand at 4250.306 kb on - strand at 4250.316 kb on - strand at 4250.376 kb on - strand, within GFF4233 at 4250.399 kb on - strand, within GFF4233 at 4250.399 kb on - strand, within GFF4233 at 4250.443 kb on + strand, within GFF4233 at 4250.446 kb on - strand, within GFF4233 at 4250.448 kb on + strand, within GFF4233 at 4250.474 kb on - strand, within GFF4233 at 4250.492 kb on - strand, within GFF4233 at 4250.494 kb on - strand, within GFF4233 at 4250.494 kb on - strand, within GFF4233 at 4250.507 kb on - strand, within GFF4233 at 4250.517 kb on - strand, within GFF4233 at 4250.517 kb on - strand, within GFF4233 at 4250.519 kb on + strand, within GFF4233 at 4250.519 kb on + strand, within GFF4233 at 4250.519 kb on + strand, within GFF4233 at 4250.519 kb on + strand, within GFF4233 at 4250.519 kb on + strand, within GFF4233 at 4250.519 kb on + strand, within GFF4233 at 4250.527 kb on - strand, within GFF4233 at 4250.590 kb on - strand, within GFF4233 at 4250.632 kb on + strand, within GFF4233 at 4250.633 kb on - strand, within GFF4233 at 4250.675 kb on + strand, within GFF4233 at 4250.678 kb on - strand, within GFF4233 at 4250.697 kb on - strand, within GFF4233 at 4250.701 kb on - strand, within GFF4233 at 4250.721 kb on - strand, within GFF4233 at 4250.751 kb on - strand, within GFF4233 at 4250.771 kb on - strand, within GFF4233 at 4250.797 kb on - strand, within GFF4233 at 4250.809 kb on + strand, within GFF4233 at 4250.814 kb on + strand, within GFF4233 at 4250.822 kb on + strand, within GFF4233 at 4250.822 kb on - strand, within GFF4233 at 4250.822 kb on - strand, within GFF4233 at 4250.833 kb on - strand, within GFF4233 at 4250.843 kb on + strand, within GFF4233 at 4250.843 kb on + strand, within GFF4233 at 4250.851 kb on - strand, within GFF4233 at 4250.855 kb on + strand, within GFF4233 at 4250.871 kb on + strand, within GFF4233 at 4250.871 kb on + strand, within GFF4233 at 4250.871 kb on + strand, within GFF4233 at 4250.871 kb on + strand, within GFF4233 at 4250.879 kb on - strand, within GFF4233 at 4250.879 kb on - strand, within GFF4233 at 4250.879 kb on - strand, within GFF4233 at 4250.927 kb on - strand, within GFF4233 at 4250.929 kb on + strand, within GFF4233 at 4250.932 kb on - strand, within GFF4233 at 4250.934 kb on + strand, within GFF4233 at 4250.934 kb on + strand, within GFF4233 at 4250.937 kb on - strand, within GFF4233 at 4250.937 kb on - strand, within GFF4233 at 4250.937 kb on - strand, within GFF4233 at 4250.939 kb on + strand, within GFF4233 at 4250.939 kb on + strand, within GFF4233 at 4250.942 kb on - strand, within GFF4233 at 4250.942 kb on - strand, within GFF4233 at 4250.942 kb on - strand, within GFF4233 at 4250.942 kb on - strand, within GFF4233 at 4250.947 kb on - strand, within GFF4233 at 4250.947 kb on - strand, within GFF4233 at 4250.952 kb on - strand, within GFF4233 at 4250.974 kb on + strand, within GFF4233 at 4250.994 kb on + strand, within GFF4233 at 4250.994 kb on + strand, within GFF4233 at 4250.994 kb on + strand, within GFF4233 at 4250.994 kb on + strand, within GFF4233 at 4250.994 kb on + strand, within GFF4233 at 4250.994 kb on + strand, within GFF4233 at 4250.994 kb on + strand, within GFF4233 at 4250.994 kb on + strand, within GFF4233 at 4250.994 kb on + strand, within GFF4233 at 4250.994 kb on + strand, within GFF4233 at 4250.994 kb on + strand, within GFF4233 at 4251.002 kb on - strand, within GFF4233 at 4251.002 kb on - strand, within GFF4233 at 4251.002 kb on - strand, within GFF4233 at 4251.002 kb on - strand, within GFF4233 at 4251.002 kb on - strand, within GFF4233 at 4251.002 kb on - strand, within GFF4233 at 4251.002 kb on - strand, within GFF4233 at 4251.002 kb on - strand, within GFF4233 at 4251.002 kb on - strand, within GFF4233 at 4251.023 kb on - strand, within GFF4233 at 4251.089 kb on - strand, within GFF4233 at 4251.100 kb on - strand, within GFF4233 at 4251.106 kb on - strand, within GFF4233 at 4251.116 kb on - strand, within GFF4233 at 4251.116 kb on - strand, within GFF4233 at 4251.116 kb on - strand, within GFF4233 at 4251.126 kb on + strand, within GFF4233 at 4251.144 kb on - strand, within GFF4233 at 4251.144 kb on - strand, within GFF4233 at 4251.144 kb on - strand, within GFF4233 at 4251.159 kb on + strand, within GFF4233 at 4251.165 kb on + strand, within GFF4233 at 4251.197 kb on + strand, within GFF4233 at 4251.197 kb on - strand, within GFF4233 at 4251.217 kb on - strand at 4251.219 kb on + strand at 4251.227 kb on - strand at 4251.258 kb on + strand at 4251.266 kb on - strand at 4251.345 kb on + strand at 4251.412 kb on - strand at 4251.475 kb on - strand at 4251.477 kb on - strand at 4251.530 kb on + strand at 4251.535 kb on + strand at 4251.543 kb on - strand at 4251.543 kb on - strand at 4251.543 kb on - strand at 4251.543 kb on - strand at 4251.553 kb on - strand at 4251.553 kb on - strand at 4251.553 kb on - strand at 4251.553 kb on - strand at 4251.555 kb on + strand at 4251.667 kb on - strand, within GFF4234 at 4251.733 kb on + strand, within GFF4234 at 4251.738 kb on + strand, within GFF4234 at 4251.756 kb on - strand, within GFF4234 at 4251.756 kb on - strand, within GFF4234 at 4251.756 kb on - strand, within GFF4234 at 4251.778 kb on - strand, within GFF4234 at 4251.778 kb on - strand, within GFF4234 at 4251.782 kb on - strand, within GFF4234 at 4251.783 kb on - strand, within GFF4234 at 4251.837 kb on + strand, within GFF4234 at 4251.886 kb on - strand, within GFF4234 at 4251.886 kb on - strand, within GFF4234 at 4251.902 kb on + strand, within GFF4234 at 4251.904 kb on + strand, within GFF4234 at 4251.904 kb on + strand, within GFF4234 at 4251.910 kb on - strand, within GFF4234 at 4251.925 kb on + strand, within GFF4234 at 4251.933 kb on - strand, within GFF4234 at 4251.962 kb on + strand, within GFF4234 at 4251.962 kb on + strand, within GFF4234 at 4251.975 kb on - strand, within GFF4234 at 4252.011 kb on - strand, within GFF4234 at 4252.011 kb on - strand, within GFF4234 at 4252.034 kb on + strand, within GFF4234 at 4252.034 kb on + strand, within GFF4234 at 4252.039 kb on + strand, within GFF4234 at 4252.049 kb on + strand, within GFF4234 at 4252.080 kb on + strand, within GFF4234 at 4252.080 kb on + strand, within GFF4234 at 4252.080 kb on + strand, within GFF4234 at 4252.080 kb on - strand, within GFF4234 at 4252.088 kb on - strand, within GFF4234 at 4252.088 kb on - strand, within GFF4234 at 4252.088 kb on - strand, within GFF4234 at 4252.088 kb on - strand, within GFF4234 at 4252.125 kb on - strand, within GFF4234 at 4252.191 kb on - strand, within GFF4234 at 4252.194 kb on + strand, within GFF4234 at 4252.194 kb on + strand, within GFF4234 at 4252.194 kb on + strand, within GFF4234 at 4252.202 kb on - strand, within GFF4234 at 4252.204 kb on + strand, within GFF4234 at 4252.207 kb on - strand, within GFF4234 at 4252.218 kb on + strand, within GFF4234 at 4252.219 kb on + strand, within GFF4234 at 4252.226 kb on - strand, within GFF4234 at 4252.226 kb on - strand, within GFF4234
Per-strain Table
Position Strand Gene LocusTag Fraction EMM_noCarbon with D-Glucose and Ammonium Sulfate remove 4,249,238 - +0.4 4,249,276 - -1.1 4,249,326 - +0.1 4,249,326 - +0.3 4,249,367 - -0.2 4,249,415 - GFF4232 0.11 -0.1 4,249,515 + GFF4232 0.23 -2.1 4,249,515 + GFF4232 0.23 +0.5 4,249,523 - GFF4232 0.24 -2.8 4,249,523 - GFF4232 0.24 -1.8 4,249,527 + GFF4232 0.24 -0.8 4,249,532 + GFF4232 0.25 +1.5 4,249,535 - GFF4232 0.25 -0.6 4,249,535 - GFF4232 0.25 -1.9 4,249,546 - GFF4232 0.26 +0.1 4,249,592 - GFF4232 0.32 -0.8 4,249,642 + GFF4232 0.38 +0.1 4,249,667 + GFF4232 0.41 +0.9 4,249,774 + GFF4232 0.53 -1.3 4,249,774 + GFF4232 0.53 -0.5 4,249,774 + GFF4232 0.53 +0.1 4,249,774 + GFF4232 0.53 -2.0 4,249,774 + GFF4232 0.53 -0.6 4,249,782 - GFF4232 0.54 -0.9 4,249,796 + GFF4232 0.56 +0.5 4,249,796 + GFF4232 0.56 +0.0 4,249,796 + GFF4232 0.56 -0.4 4,249,796 + GFF4232 0.56 -1.9 4,249,804 - GFF4232 0.57 -0.2 4,249,804 - GFF4232 0.57 -0.5 4,249,811 - GFF4232 0.58 +0.6 4,249,816 - GFF4232 0.58 +1.4 4,249,830 + GFF4232 0.60 +0.0 4,249,833 - GFF4232 0.60 -1.8 4,249,843 + GFF4232 0.62 -0.4 4,249,847 + GFF4232 0.62 +0.2 4,249,867 + GFF4232 0.65 +0.9 4,249,874 - GFF4232 0.65 -0.4 4,249,876 - GFF4232 0.66 -0.6 4,249,907 - GFF4232 0.69 -1.9 4,249,907 - GFF4232 0.69 -0.2 4,249,907 - GFF4232 0.69 +0.1 4,249,908 - GFF4232 0.69 -0.9 4,249,913 - GFF4232 0.70 -1.5 4,249,931 + GFF4232 0.72 +0.4 4,249,977 - GFF4232 0.78 +1.2 4,250,005 + GFF4232 0.81 -1.3 4,250,023 - GFF4232 0.83 -1.5 4,250,049 + GFF4232 0.86 -1.2 4,250,057 - GFF4232 0.87 -0.5 4,250,081 - -0.6 4,250,088 - -0.3 4,250,102 + -1.3 4,250,112 - +0.0 4,250,121 - -0.6 4,250,121 - -0.6 4,250,143 + +1.5 4,250,151 - +0.9 4,250,165 - +1.4 4,250,238 - -0.3 4,250,306 - +0.5 4,250,316 - -0.5 4,250,376 - GFF4233 0.15 +0.5 4,250,399 - GFF4233 0.17 -1.9 4,250,399 - GFF4233 0.17 -1.9 4,250,443 + GFF4233 0.21 -0.6 4,250,446 - GFF4233 0.21 -1.8 4,250,448 + GFF4233 0.21 -2.0 4,250,474 - GFF4233 0.24 -0.1 4,250,492 - GFF4233 0.25 +0.6 4,250,494 - GFF4233 0.25 +0.2 4,250,494 - GFF4233 0.25 +1.6 4,250,507 - GFF4233 0.27 -1.9 4,250,517 - GFF4233 0.28 +0.6 4,250,517 - GFF4233 0.28 -1.8 4,250,519 + GFF4233 0.28 +0.4 4,250,519 + GFF4233 0.28 -0.5 4,250,519 + GFF4233 0.28 -0.3 4,250,519 + GFF4233 0.28 +1.0 4,250,519 + GFF4233 0.28 -0.1 4,250,519 + GFF4233 0.28 -1.2 4,250,527 - GFF4233 0.28 +0.2 4,250,590 - GFF4233 0.34 -1.5 4,250,632 + GFF4233 0.38 -0.3 4,250,633 - GFF4233 0.38 -0.8 4,250,675 + GFF4233 0.42 -1.5 4,250,678 - GFF4233 0.42 +1.3 4,250,697 - GFF4233 0.44 +0.2 4,250,701 - GFF4233 0.44 +1.1 4,250,721 - GFF4233 0.46 -0.7 4,250,751 - GFF4233 0.49 +0.2 4,250,771 - GFF4233 0.50 +0.1 4,250,797 - GFF4233 0.53 -0.0 4,250,809 + GFF4233 0.54 -0.3 4,250,814 + GFF4233 0.54 -1.9 4,250,822 + GFF4233 0.55 -1.2 4,250,822 - GFF4233 0.55 -0.1 4,250,822 - GFF4233 0.55 -0.3 4,250,833 - GFF4233 0.56 +1.2 4,250,843 + GFF4233 0.57 -2.0 4,250,843 + GFF4233 0.57 +0.5 4,250,851 - GFF4233 0.58 +0.0 4,250,855 + GFF4233 0.58 -0.1 4,250,871 + GFF4233 0.59 -0.5 4,250,871 + GFF4233 0.59 -2.5 4,250,871 + GFF4233 0.59 +0.8 4,250,871 + GFF4233 0.59 -0.9 4,250,879 - GFF4233 0.60 -0.7 4,250,879 - GFF4233 0.60 +1.4 4,250,879 - GFF4233 0.60 +0.2 4,250,927 - GFF4233 0.65 +0.2 4,250,929 + GFF4233 0.65 -0.6 4,250,932 - GFF4233 0.65 +1.6 4,250,934 + GFF4233 0.65 -1.1 4,250,934 + GFF4233 0.65 -0.4 4,250,937 - GFF4233 0.65 -1.9 4,250,937 - GFF4233 0.65 -0.1 4,250,937 - GFF4233 0.65 -1.4 4,250,939 + GFF4233 0.66 +0.0 4,250,939 + GFF4233 0.66 -1.5 4,250,942 - GFF4233 0.66 +0.3 4,250,942 - GFF4233 0.66 +0.0 4,250,942 - GFF4233 0.66 -0.5 4,250,942 - GFF4233 0.66 +0.4 4,250,947 - GFF4233 0.66 -1.1 4,250,947 - GFF4233 0.66 +0.5 4,250,952 - GFF4233 0.67 -0.6 4,250,974 + GFF4233 0.69 -1.1 4,250,994 + GFF4233 0.71 +0.0 4,250,994 + GFF4233 0.71 +0.8 4,250,994 + GFF4233 0.71 -1.2 4,250,994 + GFF4233 0.71 +0.4 4,250,994 + GFF4233 0.71 -0.2 4,250,994 + GFF4233 0.71 +1.0 4,250,994 + GFF4233 0.71 -0.8 4,250,994 + GFF4233 0.71 -1.2 4,250,994 + GFF4233 0.71 -0.4 4,250,994 + GFF4233 0.71 +0.7 4,250,994 + GFF4233 0.71 -0.6 4,251,002 - GFF4233 0.71 -0.8 4,251,002 - GFF4233 0.71 -0.7 4,251,002 - GFF4233 0.71 -1.9 4,251,002 - GFF4233 0.71 -0.0 4,251,002 - GFF4233 0.71 +1.0 4,251,002 - GFF4233 0.71 -1.5 4,251,002 - GFF4233 0.71 -0.6 4,251,002 - GFF4233 0.71 +0.0 4,251,002 - GFF4233 0.71 +0.6 4,251,023 - GFF4233 0.73 -0.2 4,251,089 - GFF4233 0.79 -0.7 4,251,100 - GFF4233 0.80 -0.8 4,251,106 - GFF4233 0.81 -1.3 4,251,116 - GFF4233 0.82 -0.3 4,251,116 - GFF4233 0.82 +0.9 4,251,116 - GFF4233 0.82 -0.6 4,251,126 + GFF4233 0.82 -0.2 4,251,144 - GFF4233 0.84 +0.6 4,251,144 - GFF4233 0.84 -0.9 4,251,144 - GFF4233 0.84 -1.8 4,251,159 + GFF4233 0.85 -0.1 4,251,165 + GFF4233 0.86 -0.6 4,251,197 + GFF4233 0.89 -2.1 4,251,197 - GFF4233 0.89 -0.1 4,251,217 - -0.3 4,251,219 + +0.2 4,251,227 - +1.7 4,251,258 + +0.1 4,251,266 - -0.2 4,251,345 + -1.4 4,251,412 - -0.5 4,251,475 - -0.1 4,251,477 - -1.9 4,251,530 + -1.8 4,251,535 + -1.2 4,251,543 - -2.3 4,251,543 - -1.8 4,251,543 - -2.3 4,251,543 - -0.0 4,251,553 - -0.9 4,251,553 - +1.3 4,251,553 - -1.8 4,251,553 - -0.2 4,251,555 + +0.6 4,251,667 - GFF4234 0.11 -1.5 4,251,733 + GFF4234 0.14 -1.8 4,251,738 + GFF4234 0.14 +0.3 4,251,756 - GFF4234 0.14 -1.0 4,251,756 - GFF4234 0.14 -0.5 4,251,756 - GFF4234 0.14 -0.5 4,251,778 - GFF4234 0.15 -0.8 4,251,778 - GFF4234 0.15 -1.9 4,251,782 - GFF4234 0.15 +1.7 4,251,783 - GFF4234 0.15 -0.4 4,251,837 + GFF4234 0.17 -0.1 4,251,886 - GFF4234 0.18 +0.4 4,251,886 - GFF4234 0.18 +0.6 4,251,902 + GFF4234 0.19 -0.6 4,251,904 + GFF4234 0.19 -2.3 4,251,904 + GFF4234 0.19 -1.0 4,251,910 - GFF4234 0.19 -1.2 4,251,925 + GFF4234 0.20 -0.6 4,251,933 - GFF4234 0.20 -0.1 4,251,962 + GFF4234 0.21 -1.8 4,251,962 + GFF4234 0.21 -1.0 4,251,975 - GFF4234 0.21 -1.1 4,252,011 - GFF4234 0.22 -0.8 4,252,011 - GFF4234 0.22 -0.8 4,252,034 + GFF4234 0.23 +0.1 4,252,034 + GFF4234 0.23 +0.8 4,252,039 + GFF4234 0.23 -0.5 4,252,049 + GFF4234 0.24 -1.0 4,252,080 + GFF4234 0.25 -0.5 4,252,080 + GFF4234 0.25 +0.1 4,252,080 + GFF4234 0.25 -0.1 4,252,080 - GFF4234 0.25 +0.6 4,252,088 - GFF4234 0.25 -0.8 4,252,088 - GFF4234 0.25 -0.2 4,252,088 - GFF4234 0.25 +0.6 4,252,088 - GFF4234 0.25 +1.1 4,252,125 - GFF4234 0.26 -0.4 4,252,191 - GFF4234 0.28 -0.8 4,252,194 + GFF4234 0.28 +0.4 4,252,194 + GFF4234 0.28 -0.6 4,252,194 + GFF4234 0.28 -0.5 4,252,202 - GFF4234 0.29 +0.6 4,252,204 + GFF4234 0.29 -0.3 4,252,207 - GFF4234 0.29 -1.5 4,252,218 + GFF4234 0.29 -1.5 4,252,219 + GFF4234 0.29 -0.9 4,252,226 - GFF4234 0.29 +0.8 4,252,226 - GFF4234 0.29 +0.1
Or see this region's nucleotide sequence