Strain Fitness in Sphingobium sp. HT1-2 around GFF4222

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
4,238,880	-				+1.1
4,238,880	-				-3.3
4,238,887	+				-0.5
4,238,892	+				-0.7
4,238,901	+				-0.8
4,238,902	-				-1.5
4,238,904	+				+0.6
4,238,911	+				-0.3
4,238,912	-				-2.4
4,238,919	-				-1.0
4,238,941	+				+1.2
4,238,941	+				+0.6
4,238,941	+				-0.4
4,238,943	+				-0.4
4,238,943	-				-1.4
4,238,949	-				-2.1
4,238,949	-				+0.2
4,238,949	-				+0.2
4,238,949	-				-0.4
4,238,949	-				-0.2
4,238,949	-				+1.4
4,238,949	-				+0.1
4,238,949	-				-0.0
4,238,949	-				-1.8
4,238,949	-				-0.2
4,238,959	-				-1.7
4,238,970	+				-1.0
4,238,972	+				+0.8
4,238,972	+				-0.3
4,238,996	+				+0.4
4,239,018	+				+0.8
4,239,018	+				+0.7
4,239,026	-				-0.3
4,239,032	+				-1.6
4,239,040	+				-2.2
4,239,070	+				-0.0
4,239,075	+				+0.0
4,239,078	-				-0.5
4,239,078	-				-1.4
4,239,078	-				-0.6
4,239,078	-				-0.9
4,239,078	-				+1.0
4,239,081	+				-2.0
4,239,086	+				+0.4
4,239,089	-				-0.6
4,239,107	+				-1.0
4,239,117	+				-0.8
4,239,117	+				+0.2
4,239,117	+				-0.6
4,239,123	-				-0.1
4,239,123	-				+0.5
4,239,127	+				-0.9
4,239,131	+				-1.6
4,239,135	+				+0.7
4,239,135	+				+0.5
4,239,135	-				-0.5
4,239,135	-				+0.5
4,239,137	+				-0.1
4,239,142	+				+0.5
4,239,142	+				-1.2
4,239,147	+				-0.1
4,239,148	-				-0.1
4,239,150	-				+0.0
4,239,155	-				-0.3
4,239,162	+				-0.2
4,239,183	+				-0.7
4,239,183	+				+0.5
4,239,183	+				-1.2
4,239,183	+				-1.3
4,239,183	+				-0.0
4,239,188	+				-0.8
4,239,191	-				-2.0
4,239,191	-				-0.6
4,239,191	-				-1.6
4,239,196	-				-0.9
4,239,197	+				-0.6
4,239,197	+				+0.4
4,239,237	+				+0.5
4,239,237	-				+0.1
4,239,245	-				+0.6
4,239,288	+				+0.5
4,239,288	+				-0.6
4,239,296	-				-1.0
4,239,351	+				-0.3
4,239,351	+				+0.3
4,239,351	+				-0.4
4,239,351	+				-1.0
4,239,351	+				-0.9
4,239,359	-				-1.6
4,239,359	-				+0.1
4,239,382	+				-1.1
4,239,386	-				-0.2
4,239,390	+				+0.6
4,239,390	+				+0.8
4,239,391	-				-0.7
4,239,391	-				-0.9
4,239,396	-				-0.2
4,239,398	-				-0.3
4,239,398	-				+0.3
4,239,398	-				+1.4
4,239,415	+				-2.2
4,239,423	-				-0.3
4,239,423	-				-0.6
4,239,423	-				-1.5
4,239,425	+				-0.4
4,239,428	-				-0.2
4,239,432	+				+0.5
4,239,433	-				-1.2
4,239,433	-				-1.0
4,239,434	-				-1.7
4,239,434	-				+0.5
4,239,450	+				-0.0
4,239,458	-				+0.8
4,239,460	-				-0.7
4,239,465	-				-1.3
4,239,481	-				+0.6
4,239,490	+				+0.1
4,239,490	+				+0.3
4,239,493	-				-1.7
4,239,498	-				-1.0
4,239,500	+				-1.0
4,239,500	+				-0.6
4,239,508	-				-0.7
4,239,508	-				-1.2
4,239,508	-				-1.6
4,239,508	-				-0.5
4,239,508	-				-1.1
4,239,520	-				-1.0
4,239,537	-				-1.7
4,239,552	+				-0.3
4,239,552	+				-0.9
4,239,552	+				-0.0
4,239,552	+				-0.9
4,239,552	+				+1.4
4,239,560	-				+0.1
4,239,560	-				-2.4
4,239,560	-				+0.4
4,239,560	-				-0.6
4,239,560	-				-0.2
4,239,560	-				-0.3
4,239,572	+				+1.2
4,239,580	-				-0.6
4,239,585	-				+0.3
4,239,612	-				+1.7
4,239,617	+				+0.7
4,239,617	-				-0.2
4,239,622	+				+0.4
4,239,627	+				+0.3
4,239,629	+				-1.5
4,239,630	-				+1.3
4,239,634	+				-1.2
4,239,635	-				-0.1
4,239,664	+				-1.3
4,239,664	+				-0.4
4,239,672	-				+0.8
4,239,674	+				-0.5
4,239,707	-				-0.6
4,239,740	+				-1.2
4,239,740	+				+1.3
4,239,740	+				-0.2
4,239,748	-				+0.0
4,239,748	-				-0.9
4,239,748	-				-1.2
4,239,754	-				-0.7
4,239,754	-				+0.5
4,239,754	-				+1.8
4,239,766	+				-0.6
4,239,766	+				-0.6
4,239,776	+				-1.7
4,239,785	+				+0.5
4,239,821	+				-0.3
4,239,821	-				-0.5
4,239,832	+				-2.6
4,239,832	-				-0.3
4,239,834	+				+0.4
4,239,836	+				+0.4
4,239,836	+				+0.1
4,239,837	-				+1.0
4,239,840	-				-0.1
4,239,840	-				-0.2
4,239,850	-				+1.0
4,239,850	-				-0.0
4,239,885	-				-2.6
4,239,889	+		GFF4222	0.10	-1.6
4,239,921	-		GFF4222	0.36	-0.2
4,239,921	-		GFF4222	0.36	+2.0
4,239,924	+		GFF4222	0.38	-1.7
4,239,925	+		GFF4222	0.39	-0.4
4,239,932	-		GFF4222	0.44	+0.5
4,239,933	-		GFF4222	0.45	+0.4
4,239,935	+		GFF4222	0.47	-0.1
4,239,935	+		GFF4222	0.47	+0.1
4,239,943	-		GFF4222	0.53	-2.4
4,239,963	+		GFF4222	0.69	-1.0
4,239,967	+		GFF4222	0.72	+0.6
4,239,971	-		GFF4222	0.75	-0.9
4,239,973	+		GFF4222	0.77	+0.5
4,239,973	+		GFF4222	0.77	+1.1
4,239,973	+		GFF4222	0.77	-1.7
4,239,980	-		GFF4222	0.83	-0.3
4,239,981	-		GFF4222	0.83	-1.0
4,239,985	+		GFF4222	0.87	-0.0
4,240,014	+				-1.7
4,240,017	+				-0.2
4,240,022	+				-0.7
4,240,022	-				-0.2
4,240,025	-				+0.6
4,240,025	-				+1.0
4,240,025	-				-1.6
4,240,064	+				-0.3
4,240,064	+				-0.5
4,240,072	-				-0.6
4,240,089	-				-1.5
4,240,091	+				-1.6
4,240,099	-				-1.7
4,240,099	-				-1.8
4,240,123	-				-0.9
4,240,123	-				+0.4
4,240,123	-				-0.0
4,240,123	-				-0.3
4,240,129	-				-0.2
4,240,129	-				-0.3
4,240,139	+				-0.3
4,240,149	-				+0.2
4,240,154	+				-2.0
4,240,154	+				-0.4
4,240,159	+				+0.5
4,240,167	-				-1.7
4,240,167	-				-0.3
4,240,172	-				+0.1
4,240,217	-				-0.6
4,240,238	+				+0.4
4,240,239	+				-0.1
4,240,245	+				-0.3
4,240,245	+				+0.1
4,240,245	+				-2.0
4,240,248	-				-0.4
4,240,253	-				-0.5
4,240,253	-				-2.6
4,240,253	-				+0.3
4,240,253	-				-0.9
4,240,253	-				+0.4
4,240,253	-				-0.9
4,240,253	-				+0.4
4,240,253	-				+0.3
4,240,253	-				+1.3
4,240,263	+				-0.7
4,240,263	-				+0.1
4,240,264	+				-0.9
4,240,272	-				-0.5
4,240,276	-				+0.3
4,240,299	+				-0.0
4,240,307	-				+1.4
4,240,315	-				-0.9
4,240,316	+				-0.3
4,240,329	+				-2.4
4,240,329	+				-0.6
4,240,329	+				-0.7
4,240,334	+				-1.7
4,240,334	+				+0.3
4,240,337	-				-0.2
4,240,337	-				+1.1
4,240,337	-				+1.4
4,240,351	-				-1.4
4,240,359	+				+0.0
4,240,359	+				-1.6
4,240,360	-				-1.2
4,240,362	+				-0.2
4,240,367	-				-1.9
4,240,367	-				-0.6
4,240,367	-				-0.0
4,240,367	-				-1.0
4,240,369	+				+0.0
4,240,375	-				-0.0
4,240,399	-				-1.4
4,240,409	-				-0.5
4,240,409	-				+0.8
4,240,409	-				-0.0
4,240,421	+				-0.5
4,240,422	-				-0.0
4,240,432	+				+0.7
4,240,437	+				-1.7
4,240,491	+				-0.0
4,240,504	-				+0.0
4,240,514	-				-0.2
4,240,529	-				-1.6
4,240,531	-				+0.4
4,240,540	+				-1.0
4,240,556	-				+0.3
4,240,692	+				-0.2
4,240,720	-				-0.5
4,240,752	-				-0.4
4,240,755	+				-1.3
4,240,759	-				-1.8
4,240,771	-				+0.1
4,240,778	-				-1.5
4,240,792	-				-0.9
4,240,794	-				-0.7
4,240,820	-				-1.3
4,240,839	-				-0.2
4,240,864	-		GFF4223	0.11	-0.3
4,240,881	-		GFF4223	0.13	+0.3
4,240,881	-		GFF4223	0.13	-0.9
4,240,881	-		GFF4223	0.13	+1.0
4,240,887	-		GFF4223	0.14	+0.4
4,240,889	-		GFF4223	0.14	-1.6
4,240,892	-		GFF4223	0.14	-1.0
4,240,894	+		GFF4223	0.15	-0.6
4,240,894	+		GFF4223	0.15	+1.6
4,240,894	+		GFF4223	0.15	-0.6
4,240,894	+		GFF4223	0.15	-0.3
4,240,894	+		GFF4223	0.15	-1.2
4,240,894	+		GFF4223	0.15	+0.9
4,240,894	+		GFF4223	0.15	-0.4
4,240,894	+		GFF4223	0.15	+0.0
4,240,902	+		GFF4223	0.16	+0.2
4,240,902	-		GFF4223	0.16	-0.3
4,240,902	-		GFF4223	0.16	-1.5
4,240,902	-		GFF4223	0.16	-1.0
4,240,902	-		GFF4223	0.16	-0.2
4,240,902	-		GFF4223	0.16	+1.1
4,240,907	+		GFF4223	0.16	+0.5
4,240,912	+		GFF4223	0.17	-0.6
4,240,932	+		GFF4223	0.19	-0.5
4,240,932	-		GFF4223	0.19	-0.2
4,240,939	+		GFF4223	0.20	+0.0
4,240,942	-		GFF4223	0.21	+0.5
4,240,942	-		GFF4223	0.21	-0.6
4,240,947	-		GFF4223	0.21	-2.0
4,240,959	+		GFF4223	0.23	-1.9
4,240,959	+		GFF4223	0.23	-0.4
4,240,967	-		GFF4223	0.24	-0.6
4,240,967	-		GFF4223	0.24	+0.0
4,240,981	+		GFF4223	0.25	-1.3
4,240,999	-		GFF4223	0.27	-0.1
4,240,999	-		GFF4223	0.27	-1.4