Strain Fitness in Sphingobium sp. HT1-2 around GFF417

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF416 and GFF417 are separated by 123 nucleotidesGFF417 and GFF418 are separated by 85 nucleotidesGFF418 and GFF419 are separated by 103 nucleotides GFF416 - beta-glucosidase (EC 3.2.1.21), at 409,970 to 412,306 GFF416 GFF417 - small multidrug resistance family (SMR) protein, at 412,430 to 412,750 GFF417 GFF418 - tRNA-Tyr-GTA, at 412,836 to 412,921 GFF418 GFF419 - '23S rRNA (guanosine(2251)-2'-O)-methyltransferase (EC 2.1.1.185)' transl_table=11, at 413,025 to 413,765 GFF419 Position (kb) 412 413Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 411.456 kb on + strand, within GFF416at 411.464 kb on - strand, within GFF416at 411.483 kb on + strand, within GFF416at 411.493 kb on - strand, within GFF416at 411.560 kb on - strand, within GFF416at 411.618 kb on - strand, within GFF416at 411.654 kb on - strand, within GFF416at 411.678 kb on + strand, within GFF416at 411.731 kb on + strand, within GFF416at 411.779 kb on - strand, within GFF416at 411.779 kb on - strand, within GFF416at 411.807 kb on + strand, within GFF416at 411.815 kb on - strand, within GFF416at 411.848 kb on - strand, within GFF416at 411.855 kb on + strand, within GFF416at 411.882 kb on + strand, within GFF416at 411.926 kb on + strand, within GFF416at 411.927 kb on - strand, within GFF416at 411.936 kb on + strand, within GFF416at 411.999 kb on + strand, within GFF416at 412.002 kb on - strand, within GFF416at 412.004 kb on + strand, within GFF416at 412.015 kb on + strand, within GFF416at 412.072 kb on + strand, within GFF416at 412.072 kb on + strand, within GFF416at 412.080 kb on - strandat 412.081 kb on + strandat 412.081 kb on + strandat 412.103 kb on + strandat 412.147 kb on + strandat 412.164 kb on + strandat 412.195 kb on + strandat 412.198 kb on - strandat 412.198 kb on - strandat 412.202 kb on + strandat 412.202 kb on + strandat 412.213 kb on + strandat 412.219 kb on + strandat 412.226 kb on + strandat 412.226 kb on + strandat 412.234 kb on - strandat 412.243 kb on + strandat 412.251 kb on - strandat 412.251 kb on - strandat 412.251 kb on - strandat 412.251 kb on - strandat 412.251 kb on - strandat 412.251 kb on - strandat 412.259 kb on + strandat 412.262 kb on - strandat 412.266 kb on + strandat 412.297 kb on - strandat 412.338 kb on + strandat 412.338 kb on + strandat 412.346 kb on - strandat 412.346 kb on - strandat 412.346 kb on - strandat 412.365 kb on - strandat 412.423 kb on - strandat 412.428 kb on - strandat 412.436 kb on - strandat 412.441 kb on - strandat 412.490 kb on + strand, within GFF417at 412.493 kb on - strand, within GFF417at 412.500 kb on + strand, within GFF417at 412.508 kb on - strand, within GFF417at 412.553 kb on + strand, within GFF417at 412.553 kb on + strand, within GFF417at 412.553 kb on + strand, within GFF417at 412.553 kb on + strand, within GFF417at 412.553 kb on + strand, within GFF417at 412.553 kb on + strand, within GFF417at 412.553 kb on + strand, within GFF417at 412.553 kb on + strand, within GFF417at 412.553 kb on + strand, within GFF417at 412.561 kb on - strand, within GFF417at 412.566 kb on - strand, within GFF417at 412.585 kb on - strand, within GFF417at 412.634 kb on + strand, within GFF417at 412.675 kb on - strand, within GFF417at 412.746 kb on + strandat 412.830 kb on + strandat 412.830 kb on + strandat 412.830 kb on + strandat 412.830 kb on + strandat 412.835 kb on + strandat 412.838 kb on - strandat 412.838 kb on - strandat 412.843 kb on - strandat 412.843 kb on - strandat 412.843 kb on - strandat 412.926 kb on - strandat 413.047 kb on - strandat 413.082 kb on + strandat 413.095 kb on + strandat 413.113 kb on - strand, within GFF419at 413.131 kb on + strand, within GFF419at 413.202 kb on - strand, within GFF419at 413.235 kb on - strand, within GFF419at 413.278 kb on + strand, within GFF419at 413.278 kb on + strand, within GFF419at 413.278 kb on + strand, within GFF419at 413.304 kb on - strand, within GFF419at 413.308 kb on + strand, within GFF419at 413.331 kb on - strand, within GFF419at 413.339 kb on + strand, within GFF419at 413.386 kb on - strand, within GFF419at 413.402 kb on + strand, within GFF419at 413.405 kb on + strand, within GFF419at 413.405 kb on + strand, within GFF419at 413.413 kb on - strand, within GFF419at 413.413 kb on - strand, within GFF419at 413.438 kb on + strand, within GFF419at 413.440 kb on + strand, within GFF419at 413.456 kb on - strand, within GFF419at 413.461 kb on - strand, within GFF419at 413.472 kb on - strand, within GFF419at 413.481 kb on + strand, within GFF419at 413.505 kb on + strand, within GFF419at 413.556 kb on + strand, within GFF419at 413.575 kb on + strand, within GFF419at 413.580 kb on + strand, within GFF419at 413.588 kb on - strand, within GFF419at 413.588 kb on - strand, within GFF419at 413.614 kb on + strand, within GFF419at 413.618 kb on + strand, within GFF419at 413.626 kb on - strand, within GFF419at 413.633 kb on + strand, within GFF419at 413.633 kb on + strand, within GFF419at 413.633 kb on + strand, within GFF419at 413.633 kb on + strand, within GFF419at 413.634 kb on + strand, within GFF419at 413.635 kb on + strand, within GFF419at 413.635 kb on + strand, within GFF419at 413.635 kb on + strand, within GFF419at 413.635 kb on + strand, within GFF419at 413.641 kb on - strand, within GFF419at 413.641 kb on - strand, within GFF419at 413.641 kb on - strand, within GFF419at 413.643 kb on - strand, within GFF419at 413.643 kb on - strand, within GFF419at 413.643 kb on - strand, within GFF419at 413.648 kb on + strand, within GFF419at 413.661 kb on - strand, within GFF419at 413.692 kb on - strandat 413.700 kb on + strandat 413.710 kb on + strandat 413.710 kb on + strandat 413.710 kb on + strandat 413.718 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction EMM_noCarbon with D-Glucose and Ammonium Sulfate
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411,456 + GFF416 0.64 -1.0
411,464 - GFF416 0.64 +0.3
411,483 + GFF416 0.65 -0.3
411,493 - GFF416 0.65 -1.6
411,560 - GFF416 0.68 -1.0
411,618 - GFF416 0.71 +1.4
411,654 - GFF416 0.72 -0.3
411,678 + GFF416 0.73 +0.7
411,731 + GFF416 0.75 -0.5
411,779 - GFF416 0.77 -0.1
411,779 - GFF416 0.77 +0.3
411,807 + GFF416 0.79 -0.7
411,815 - GFF416 0.79 -1.2
411,848 - GFF416 0.80 +1.2
411,855 + GFF416 0.81 +0.2
411,882 + GFF416 0.82 -0.1
411,926 + GFF416 0.84 -0.6
411,927 - GFF416 0.84 +0.2
411,936 + GFF416 0.84 +0.9
411,999 + GFF416 0.87 +1.0
412,002 - GFF416 0.87 +0.1
412,004 + GFF416 0.87 -0.2
412,015 + GFF416 0.88 -0.1
412,072 + GFF416 0.90 +1.2
412,072 + GFF416 0.90 -1.3
412,080 - +0.1
412,081 + -1.1
412,081 + +0.0
412,103 + +0.0
412,147 + +2.0
412,164 + +1.0
412,195 + -0.4
412,198 - +1.0
412,198 - -0.0
412,202 + -0.3
412,202 + +0.1
412,213 + +0.3
412,219 + +0.2
412,226 + -0.3
412,226 + +1.2
412,234 - -2.2
412,243 + -1.1
412,251 - -0.5
412,251 - +0.1
412,251 - +1.2
412,251 - +1.2
412,251 - -0.0
412,251 - +0.2
412,259 + -2.2
412,262 - -0.8
412,266 + -1.4
412,297 - -0.5
412,338 + -0.7
412,338 + +0.7
412,346 - -1.5
412,346 - -2.2
412,346 - -0.9
412,365 - +0.2
412,423 - -0.6
412,428 - +0.6
412,436 - -1.7
412,441 - +0.4
412,490 + GFF417 0.19 -0.3
412,493 - GFF417 0.20 -0.7
412,500 + GFF417 0.22 -2.0
412,508 - GFF417 0.24 -0.6
412,553 + GFF417 0.38 -2.1
412,553 + GFF417 0.38 +0.9
412,553 + GFF417 0.38 +0.7
412,553 + GFF417 0.38 +0.6
412,553 + GFF417 0.38 +1.5
412,553 + GFF417 0.38 +0.1
412,553 + GFF417 0.38 -1.3
412,553 + GFF417 0.38 +1.3
412,553 + GFF417 0.38 +1.1
412,561 - GFF417 0.41 -0.2
412,566 - GFF417 0.42 -0.6
412,585 - GFF417 0.48 -1.6
412,634 + GFF417 0.64 +1.2
412,675 - GFF417 0.76 +0.5
412,746 + +1.0
412,830 + -1.2
412,830 + -0.8
412,830 + +1.2
412,830 + -0.2
412,835 + +0.8
412,838 - +0.5
412,838 - -1.8
412,843 - -1.3
412,843 - -3.0
412,843 - -0.5
412,926 - +0.4
413,047 - -0.1
413,082 + +0.7
413,095 + -0.6
413,113 - GFF419 0.12 +0.4
413,131 + GFF419 0.14 -0.8
413,202 - GFF419 0.24 +0.5
413,235 - GFF419 0.28 +0.2
413,278 + GFF419 0.34 +0.4
413,278 + GFF419 0.34 +0.2
413,278 + GFF419 0.34 +0.0
413,304 - GFF419 0.38 +0.5
413,308 + GFF419 0.38 -2.5
413,331 - GFF419 0.41 -0.2
413,339 + GFF419 0.42 -0.8
413,386 - GFF419 0.49 +0.4
413,402 + GFF419 0.51 -0.7
413,405 + GFF419 0.51 -0.1
413,405 + GFF419 0.51 +1.6
413,413 - GFF419 0.52 -1.4
413,413 - GFF419 0.52 -0.8
413,438 + GFF419 0.56 -0.2
413,440 + GFF419 0.56 -2.2
413,456 - GFF419 0.58 -0.9
413,461 - GFF419 0.59 +0.1
413,472 - GFF419 0.60 -0.7
413,481 + GFF419 0.62 +0.9
413,505 + GFF419 0.65 +0.4
413,556 + GFF419 0.72 -0.2
413,575 + GFF419 0.74 +0.6
413,580 + GFF419 0.75 -0.5
413,588 - GFF419 0.76 +0.5
413,588 - GFF419 0.76 +0.0
413,614 + GFF419 0.79 -1.2
413,618 + GFF419 0.80 +0.2
413,626 - GFF419 0.81 -0.6
413,633 + GFF419 0.82 +0.5
413,633 + GFF419 0.82 +0.1
413,633 + GFF419 0.82 -0.1
413,633 + GFF419 0.82 -0.6
413,634 + GFF419 0.82 -0.6
413,635 + GFF419 0.82 +0.2
413,635 + GFF419 0.82 -0.6
413,635 + GFF419 0.82 +0.2
413,635 + GFF419 0.82 +0.9
413,641 - GFF419 0.83 +1.0
413,641 - GFF419 0.83 +0.7
413,641 - GFF419 0.83 +1.6
413,643 - GFF419 0.83 -0.4
413,643 - GFF419 0.83 -0.9
413,643 - GFF419 0.83 -0.1
413,648 + GFF419 0.84 +2.2
413,661 - GFF419 0.86 -0.9
413,692 - -1.1
413,700 + -1.7
413,710 + +0.2
413,710 + -0.5
413,710 + -0.1
413,718 - -1.8

Or see this region's nucleotide sequence