Strain Fitness in Sphingobium sp. HT1-2 around GFF4111

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
4,131,389	+		GFF4110	0.27	-0.8
4,131,390	-		GFF4110	0.28	+0.6
4,131,408	+		GFF4110	0.29	+0.9
4,131,408	+		GFF4110	0.29	-0.2
4,131,408	+		GFF4110	0.29	+0.5
4,131,408	+		GFF4110	0.29	-0.5
4,131,414	-		GFF4110	0.30	-0.1
4,131,416	-		GFF4110	0.30	-2.2
4,131,416	-		GFF4110	0.30	+1.3
4,131,423	+		GFF4110	0.30	-1.4
4,131,423	+		GFF4110	0.30	+0.5
4,131,423	+		GFF4110	0.30	-1.2
4,131,431	-		GFF4110	0.31	-0.6
4,131,436	-		GFF4110	0.31	+0.0
4,131,452	+		GFF4110	0.33	+0.0
4,131,459	+		GFF4110	0.33	-1.2
4,131,467	-		GFF4110	0.34	+0.6
4,131,473	-		GFF4110	0.35	+0.9
4,131,504	-		GFF4110	0.37	-0.2
4,131,572	+		GFF4110	0.43	-0.4
4,131,585	-		GFF4110	0.44	-0.5
4,131,585	-		GFF4110	0.44	-0.2
4,131,598	+		GFF4110	0.45	-1.4
4,131,598	+		GFF4110	0.45	+0.6
4,131,598	+		GFF4110	0.45	+0.2
4,131,639	-		GFF4110	0.48	-0.7
4,131,644	+		GFF4110	0.49	-0.1
4,131,644	+		GFF4110	0.49	-2.2
4,131,644	+		GFF4110	0.49	+0.9
4,131,644	+		GFF4110	0.49	-0.1
4,131,649	+		GFF4110	0.49	+1.3
4,131,652	+		GFF4110	0.50	+0.4
4,131,672	-		GFF4110	0.51	+0.2
4,131,681	+		GFF4110	0.52	-0.3
4,131,681	+		GFF4110	0.52	-0.3
4,131,689	-		GFF4110	0.53	-0.6
4,131,689	-		GFF4110	0.53	-0.4
4,131,716	-		GFF4110	0.55	-0.4
4,131,721	-		GFF4110	0.55	-0.4
4,131,733	-		GFF4110	0.56	-0.2
4,131,746	-		GFF4110	0.57	+0.3
4,131,749	+		GFF4110	0.58	-0.3
4,131,783	+		GFF4110	0.61	-0.0
4,131,793	-		GFF4110	0.61	-1.5
4,131,801	-		GFF4110	0.62	-0.0
4,131,807	+		GFF4110	0.63	-0.3
4,131,870	+		GFF4110	0.68	-0.2
4,131,875	+		GFF4110	0.68	+0.6
4,131,875	+		GFF4110	0.68	-0.3
4,131,875	+		GFF4110	0.68	+1.3
4,131,878	-		GFF4110	0.69	-0.4
4,131,878	-		GFF4110	0.69	+0.1
4,131,883	-		GFF4110	0.69	+1.4
4,131,883	-		GFF4110	0.69	-0.3
4,131,898	+		GFF4110	0.70	-1.4
4,131,898	+		GFF4110	0.70	+0.5
4,131,898	+		GFF4110	0.70	-1.4
4,131,906	-		GFF4110	0.71	-0.5
4,131,906	-		GFF4110	0.71	-1.3
4,131,906	-		GFF4110	0.71	-0.4
4,131,906	-		GFF4110	0.71	-0.0
4,131,906	-		GFF4110	0.71	-0.3
4,131,916	-		GFF4110	0.72	-1.9
4,131,919	-		GFF4110	0.72	-0.4
4,131,937	-		GFF4110	0.73	+0.8
4,131,952	-		GFF4110	0.75	-0.1
4,131,952	-		GFF4110	0.75	-1.5
4,131,952	-		GFF4110	0.75	-0.9
4,131,952	-		GFF4110	0.75	+0.0
4,131,952	-		GFF4110	0.75	-2.0
4,131,954	+		GFF4110	0.75	+0.8
4,131,954	+		GFF4110	0.75	+0.3
4,131,954	+		GFF4110	0.75	+0.7
4,131,966	+		GFF4110	0.76	-0.7
4,131,981	-		GFF4110	0.77	+1.1
4,131,991	+		GFF4110	0.78	+0.2
4,131,991	+		GFF4110	0.78	-2.5
4,131,991	+		GFF4110	0.78	+0.2
4,131,992	+		GFF4110	0.78	+1.4
4,131,999	-		GFF4110	0.79	-1.5
4,131,999	-		GFF4110	0.79	-2.5
4,132,012	+		GFF4110	0.80	+0.5
4,132,030	+		GFF4110	0.81	+0.6
4,132,030	+		GFF4110	0.81	-0.2
4,132,038	-		GFF4110	0.82	-1.0
4,132,038	-		GFF4110	0.82	+0.8
4,132,038	-		GFF4110	0.82	-1.7
4,132,038	-		GFF4110	0.82	+0.3
4,132,053	-		GFF4110	0.83	+0.6
4,132,053	-		GFF4110	0.83	-0.1
4,132,107	+		GFF4110	0.88	-2.8
4,132,117	-		GFF4110	0.89	-0.4
4,132,134	+				-1.8
4,132,134	+				-0.7
4,132,134	+				-0.2
4,132,134	+				-0.6
4,132,134	+				+1.1
4,132,134	+				+0.7
4,132,134	+				-0.5
4,132,136	-				-0.7
4,132,139	+				+0.4
4,132,142	-				+0.4
4,132,142	-				-0.4
4,132,142	-				-3.5
4,132,142	-				+0.9
4,132,142	-				+0.8
4,132,144	+				-0.1
4,132,144	+				-0.3
4,132,147	-				-1.1
4,132,158	-				-0.3
4,132,185	+				-0.7
4,132,185	+				-2.5
4,132,185	+				-0.0
4,132,185	+				-2.4
4,132,193	-				-0.1
4,132,193	-				-0.8
4,132,193	-				+0.2
4,132,193	-				+0.0
4,132,201	+				+0.7
4,132,201	+				+0.4
4,132,201	-				-1.1
4,132,202	+				+0.2
4,132,209	-				+1.3
4,132,209	-				-2.2
4,132,213	+				-0.1
4,132,251	-				-1.5
4,132,258	-				+0.7
4,132,272	-				-0.2
4,132,274	+				+0.2
4,132,289	+				-1.5
4,132,289	+				+0.3
4,132,295	+				+0.3
4,132,309	+				-0.1
4,132,317	-				+0.9
4,132,317	-				-1.1
4,132,389	+				-0.8
4,132,397	+				-0.2
4,132,417	+				+0.5
4,132,417	+				-0.9
4,132,435	+		GFF4111	0.11	-0.2
4,132,435	+		GFF4111	0.11	-0.8
4,132,435	+		GFF4111	0.11	+1.3
4,132,435	+		GFF4111	0.11	-0.1
4,132,435	+		GFF4111	0.11	-0.8
4,132,435	+		GFF4111	0.11	-1.8
4,132,435	+		GFF4111	0.11	-0.3
4,132,435	+		GFF4111	0.11	+0.2
4,132,435	+		GFF4111	0.11	-2.0
4,132,435	+		GFF4111	0.11	-2.9
4,132,435	+		GFF4111	0.11	+1.0
4,132,435	+		GFF4111	0.11	-0.0
4,132,435	+		GFF4111	0.11	-1.5
4,132,435	+		GFF4111	0.11	-0.5
4,132,435	+		GFF4111	0.11	+0.3
4,132,435	+		GFF4111	0.11	+1.7
4,132,435	+		GFF4111	0.11	+0.0
4,132,435	+		GFF4111	0.11	+0.4
4,132,435	+		GFF4111	0.11	-0.8
4,132,435	+		GFF4111	0.11	-1.1
4,132,435	+		GFF4111	0.11	-0.9
4,132,435	+		GFF4111	0.11	+0.6
4,132,435	+		GFF4111	0.11	-1.2
4,132,435	+		GFF4111	0.11	+1.0
4,132,443	-		GFF4111	0.13	-0.8
4,132,443	-		GFF4111	0.13	-0.9
4,132,443	-		GFF4111	0.13	-0.5
4,132,443	-		GFF4111	0.13	-0.7
4,132,443	-		GFF4111	0.13	-0.3
4,132,443	-		GFF4111	0.13	+1.8
4,132,443	-		GFF4111	0.13	-2.4
4,132,443	-		GFF4111	0.13	+1.0
4,132,443	-		GFF4111	0.13	-0.5
4,132,443	-		GFF4111	0.13	-2.5
4,132,443	-		GFF4111	0.13	+0.9
4,132,443	-		GFF4111	0.13	-1.3
4,132,443	-		GFF4111	0.13	+1.0
4,132,443	-		GFF4111	0.13	-0.6
4,132,443	-		GFF4111	0.13	+0.8
4,132,443	-		GFF4111	0.13	-1.2
4,132,443	-		GFF4111	0.13	+2.0
4,132,443	-		GFF4111	0.13	-0.6
4,132,443	-		GFF4111	0.13	+0.9
4,132,443	-		GFF4111	0.13	-0.9
4,132,443	-		GFF4111	0.13	-0.1
4,132,443	-		GFF4111	0.13	+0.0
4,132,443	-		GFF4111	0.13	-1.5
4,132,443	-		GFF4111	0.13	-0.6
4,132,448	-		GFF4111	0.14	-0.3
4,132,448	-		GFF4111	0.14	-1.4
4,132,456	-		GFF4111	0.16	-0.0
4,132,476	-		GFF4111	0.20	-0.0
4,132,476	-		GFF4111	0.20	-0.5
4,132,489	+		GFF4111	0.22	-0.4
4,132,494	+		GFF4111	0.23	-0.3
4,132,494	+		GFF4111	0.23	-0.5
4,132,497	-		GFF4111	0.24	-0.2
4,132,502	-		GFF4111	0.25	-0.8
4,132,502	-		GFF4111	0.25	+0.1
4,132,504	+		GFF4111	0.25	-0.9
4,132,507	-		GFF4111	0.26	+0.4
4,132,512	-		GFF4111	0.27	+0.3
4,132,512	-		GFF4111	0.27	-0.7
4,132,514	+		GFF4111	0.27	+1.2
4,132,552	-		GFF4111	0.35	+1.1
4,132,552	-		GFF4111	0.35	-2.4
4,132,571	+		GFF4111	0.38	+0.1
4,132,573	-		GFF4111	0.39	-0.5
4,132,588	-		GFF4111	0.42	-1.1
4,132,595	+		GFF4111	0.43	+1.0
4,132,603	+		GFF4111	0.45	-1.2
4,132,603	+		GFF4111	0.45	-1.2
4,132,603	-		GFF4111	0.45	-1.2
4,132,611	-		GFF4111	0.46	-1.7
4,132,613	+		GFF4111	0.47	+0.2
4,132,616	-		GFF4111	0.47	+0.2
4,132,618	+		GFF4111	0.48	-0.4
4,132,618	+		GFF4111	0.48	+1.0
4,132,623	+		GFF4111	0.49	-0.2
4,132,623	+		GFF4111	0.49	+0.3
4,132,623	+		GFF4111	0.49	-0.2
4,132,631	-		GFF4111	0.50	-0.1
4,132,631	-		GFF4111	0.50	+0.8
4,132,631	-		GFF4111	0.50	+0.7
4,132,631	-		GFF4111	0.50	-0.1
4,132,687	+		GFF4111	0.61	-2.0
4,132,704	-		GFF4111	0.64	-0.2
4,132,720	+		GFF4111	0.68	+0.5
4,132,727	+		GFF4111	0.69	-1.0
4,132,727	+		GFF4111	0.69	-0.4
4,132,728	-		GFF4111	0.69	+1.0
4,132,735	-		GFF4111	0.71	+0.3
4,132,735	-		GFF4111	0.71	+0.3
4,132,768	+		GFF4111	0.77	-1.6
4,132,768	+		GFF4111	0.77	-0.0
4,132,768	+		GFF4111	0.77	+0.2
4,132,768	+		GFF4111	0.77	-0.5
4,132,773	+		GFF4111	0.78	-0.8
4,132,773	+		GFF4111	0.78	-0.4
4,132,773	+		GFF4111	0.78	-0.8
4,132,773	+		GFF4111	0.78	-0.2
4,132,773	+		GFF4111	0.78	+0.1
4,132,773	+		GFF4111	0.78	-1.4
4,132,773	+		GFF4111	0.78	+0.3
4,132,773	+		GFF4111	0.78	-0.7
4,132,773	+		GFF4111	0.78	+1.0
4,132,776	-		GFF4111	0.79	-0.5
4,132,776	-		GFF4111	0.79	+0.6
4,132,776	-		GFF4111	0.79	-0.7
4,132,776	-		GFF4111	0.79	-0.7
4,132,776	-		GFF4111	0.79	-0.5
4,132,776	-		GFF4111	0.79	+0.4
4,132,778	+		GFF4111	0.79	+1.7
4,132,780	+		GFF4111	0.79	+0.0
4,132,780	+		GFF4111	0.79	-0.2
4,132,781	-		GFF4111	0.80	+0.6
4,132,781	-		GFF4111	0.80	+1.3
4,132,781	-		GFF4111	0.80	+0.4
4,132,781	-		GFF4111	0.80	-0.8
4,132,781	-		GFF4111	0.80	+1.2
4,132,781	-		GFF4111	0.80	+1.0
4,132,781	-		GFF4111	0.80	-0.0
4,132,781	-		GFF4111	0.80	-1.4
4,132,781	-		GFF4111	0.80	-0.5
4,132,788	-		GFF4111	0.81	-1.8
4,132,808	+		GFF4111	0.85	+0.9
4,132,819	+		GFF4111	0.87	-1.6
4,132,819	+		GFF4111	0.87	+0.5
4,132,819	+		GFF4111	0.87	-2.3
4,132,819	+		GFF4111	0.87	+0.0
4,132,819	+		GFF4111	0.87	-1.0
4,132,819	+		GFF4111	0.87	-1.4
4,132,819	+		GFF4111	0.87	-1.4
4,132,819	+		GFF4111	0.87	-1.0
4,132,819	+		GFF4111	0.87	-1.8
4,132,819	+		GFF4111	0.87	+0.5
4,132,827	-		GFF4111	0.89	-0.5
4,132,827	-		GFF4111	0.89	-0.4
4,132,827	-		GFF4111	0.89	-0.2
4,132,827	-		GFF4111	0.89	+0.6
4,132,827	-		GFF4111	0.89	-0.8
4,132,827	-		GFF4111	0.89	+0.4
4,132,827	-		GFF4111	0.89	-0.1
4,132,827	-		GFF4111	0.89	-0.3
4,132,827	-		GFF4111	0.89	-0.5
4,132,827	-		GFF4111	0.89	+1.2
4,132,827	-		GFF4111	0.89	+0.1
4,132,827	-		GFF4111	0.89	-0.4
4,132,832	+		GFF4111	0.90	-0.1
4,132,835	-				-0.2
4,132,838	+				-0.7
4,132,853	+				+0.7
4,132,861	-				-1.1
4,132,861	-				-0.3
4,132,861	-				+0.2
4,132,867	+				+0.1
4,132,876	+				-0.5
4,132,877	+				+0.4
4,132,877	+				+0.3
4,132,877	+				+0.6
4,132,885	-				+0.1
4,132,885	-				-2.2
4,132,911	+				-0.6
4,132,920	-				-1.8
4,132,924	-				-0.6
4,132,930	+				+0.1
4,132,937	+		GFF4112	0.11	+0.9
4,132,937	-		GFF4112	0.11	+0.0
4,132,937	-		GFF4112	0.11	+0.1
4,132,942	+		GFF4112	0.12	+0.0
4,132,942	+		GFF4112	0.12	-0.4
4,132,942	+		GFF4112	0.12	+0.6
4,132,942	+		GFF4112	0.12	-1.7
4,132,942	+		GFF4112	0.12	+1.0
4,132,942	+		GFF4112	0.12	+0.5
4,132,942	+		GFF4112	0.12	-1.8
4,132,942	+		GFF4112	0.12	-0.3
4,132,942	+		GFF4112	0.12	-1.0
4,132,942	+		GFF4112	0.12	+0.5
4,132,942	+		GFF4112	0.12	-0.8
4,132,942	+		GFF4112	0.12	+0.4
4,132,945	-		GFF4112	0.13	-0.5
4,132,945	-		GFF4112	0.13	+0.7
4,132,945	-		GFF4112	0.13	-0.7
4,132,945	-		GFF4112	0.13	-1.8
4,132,947	+		GFF4112	0.13	+0.1
4,132,950	-		GFF4112	0.14	+0.1
4,132,950	-		GFF4112	0.14	+0.7
4,132,950	-		GFF4112	0.14	-0.6
4,132,950	-		GFF4112	0.14	+1.1
4,132,950	-		GFF4112	0.14	-0.9
4,132,950	-		GFF4112	0.14	-1.4
4,132,950	-		GFF4112	0.14	+0.1
4,132,950	-		GFF4112	0.14	-0.4
4,132,950	-		GFF4112	0.14	-1.0
4,132,950	-		GFF4112	0.14	-0.5
4,132,950	-		GFF4112	0.14	-1.6
4,132,950	-		GFF4112	0.14	-1.1
4,132,952	+		GFF4112	0.14	-0.1
4,132,952	+		GFF4112	0.14	-0.8
4,132,955	-		GFF4112	0.15	-0.2
4,132,960	-		GFF4112	0.16	+0.5
4,132,960	-		GFF4112	0.16	+0.5
4,132,960	-		GFF4112	0.16	+1.0
4,132,999	-		GFF4112	0.24	-0.3
4,132,999	-		GFF4112	0.24	-0.4
4,133,030	-		GFF4112	0.30	-0.5
4,133,042	+		GFF4112	0.33	+0.5
4,133,050	-		GFF4112	0.35	-0.4
4,133,050	-		GFF4112	0.35	-1.2
4,133,056	+		GFF4112	0.36	+1.0
4,133,061	+		GFF4112	0.37	-1.2
4,133,061	+		GFF4112	0.37	+0.6
4,133,138	-		GFF4112	0.53	-0.1
4,133,139	+		GFF4112	0.53	+0.3
4,133,139	-		GFF4112	0.53	+0.0
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