Strain Fitness in Sphingobium sp. HT1-2 around GFF4099

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
4,117,346	+				-0.1
4,117,346	+				+0.3
4,117,400	+				-0.1
4,117,401	+				+1.1
4,117,411	-				+0.1
4,117,437	+				-1.5
4,117,451	-				+1.0
4,117,469	+				-1.8
4,117,469	+				+0.3
4,117,527	+				+0.3
4,117,532	+				-1.0
4,117,532	+				-2.0
4,117,532	+				+0.4
4,117,532	+				-0.2
4,117,532	+				+0.2
4,117,532	+				-0.5
4,117,537	+				+0.5
4,117,540	-				-0.6
4,117,540	-				-0.4
4,117,540	-				+0.7
4,117,540	-				+0.3
4,117,540	-				+0.3
4,117,540	-				+0.7
4,117,540	-				+0.0
4,117,540	-				-0.9
4,117,540	-				+0.2
4,117,540	-				+0.1
4,117,540	-				-1.0
4,117,545	-				+1.2
4,117,547	+				+0.0
4,117,555	-				+0.8
4,117,589	+		GFF4097	0.16	+0.6
4,117,604	+		GFF4097	0.19	-0.3
4,117,604	+		GFF4097	0.19	+0.7
4,117,608	-		GFF4097	0.20	+0.3
4,117,612	-		GFF4097	0.21	-0.9
4,117,612	-		GFF4097	0.21	-1.8
4,117,612	-		GFF4097	0.21	+0.5
4,117,612	-		GFF4097	0.21	-0.2
4,117,612	-		GFF4097	0.21	-0.1
4,117,612	-		GFF4097	0.21	+0.0
4,117,634	-		GFF4097	0.26	+0.5
4,117,641	+		GFF4097	0.28	+0.6
4,117,686	-		GFF4097	0.38	-0.0
4,117,730	-		GFF4097	0.49	+0.9
4,117,746	+		GFF4097	0.52	-1.3
4,117,746	+		GFF4097	0.52	-0.0
4,117,746	+		GFF4097	0.52	-1.5
4,117,749	-		GFF4097	0.53	-0.3
4,117,754	+		GFF4097	0.54	-0.1
4,117,754	+		GFF4097	0.54	+0.3
4,117,754	-		GFF4097	0.54	-0.8
4,117,755	-		GFF4097	0.55	-1.0
4,117,759	+		GFF4097	0.55	+0.4
4,117,762	-		GFF4097	0.56	-1.8
4,117,765	+		GFF4097	0.57	+0.6
4,117,767	-		GFF4097	0.57	+0.2
4,117,770	+		GFF4097	0.58	-1.2
4,117,795	-		GFF4097	0.64	-2.2
4,117,843	-		GFF4097	0.75	-1.0
4,117,848	+		GFF4097	0.76	-0.3
4,117,866	+		GFF4097	0.80	-0.1
4,117,866	+		GFF4097	0.80	-0.3
4,117,878	+		GFF4097	0.83	-1.4
4,117,885	-		GFF4097	0.85	-0.7
4,117,899	+		GFF4097	0.88	-1.2
4,117,904	+		GFF4097	0.89	-2.7
4,117,907	-				+0.5
4,117,907	-				+1.0
4,117,912	-				-0.1
4,117,918	+				-0.8
4,117,918	+				-0.3
4,117,918	+				+0.3
4,117,925	-				+0.8
4,117,944	+				-0.4
4,117,944	+				-0.0
4,117,944	+				-0.3
4,117,944	+				+0.2
4,117,944	+				-1.7
4,117,944	+				-0.8
4,117,944	+				-0.4
4,117,944	+				+0.6
4,117,944	+				+0.9
4,117,944	+				-1.0
4,117,944	+				+0.4
4,117,952	-				+0.0
4,117,952	-				+0.1
4,117,952	-				-1.2
4,117,952	-				+0.1
4,117,952	-				-0.9
4,117,952	-				-2.0
4,117,952	-				+0.6
4,117,952	-				-0.1
4,117,952	-				+0.9
4,117,955	+				-1.6
4,117,968	+				+0.2
4,118,023	-				-1.2
4,118,033	-				+0.7
4,118,033	-				-0.5
4,118,050	+				-0.2
4,118,050	+				-0.9
4,118,050	+				-3.3
4,118,062	+				-1.5
4,118,092	-		GFF4098	0.19	-0.3
4,118,099	+		GFF4098	0.21	-1.0
4,118,106	+		GFF4098	0.24	-0.0
4,118,111	+		GFF4098	0.25	+0.1
4,118,111	+		GFF4098	0.25	-1.6
4,118,111	+		GFF4098	0.25	-0.4
4,118,111	+		GFF4098	0.25	+0.0
4,118,116	+		GFF4098	0.27	-0.3
4,118,116	+		GFF4098	0.27	-0.1
4,118,116	+		GFF4098	0.27	-1.8
4,118,119	-		GFF4098	0.28	-0.7
4,118,119	-		GFF4098	0.28	-1.2
4,118,121	+		GFF4098	0.29	+0.2
4,118,141	+		GFF4098	0.35	+0.1
4,118,146	+		GFF4098	0.37	-0.8
4,118,146	+		GFF4098	0.37	-0.5
4,118,146	+		GFF4098	0.37	-2.0
4,118,146	+		GFF4098	0.37	+0.2
4,118,154	-		GFF4098	0.40	-2.1
4,118,154	-		GFF4098	0.40	+0.3
4,118,154	-		GFF4098	0.40	-0.3
4,118,154	-		GFF4098	0.40	+0.5
4,118,154	-		GFF4098	0.40	-1.0
4,118,154	-		GFF4098	0.40	-1.2
4,118,162	-		GFF4098	0.42	+0.1
4,118,163	+		GFF4098	0.43	-1.3
4,118,163	+		GFF4098	0.43	-2.0
4,118,163	+		GFF4098	0.43	-1.4
4,118,163	+		GFF4098	0.43	-2.3
4,118,163	+		GFF4098	0.43	-0.7
4,118,163	+		GFF4098	0.43	-0.4
4,118,163	+		GFF4098	0.43	-0.5
4,118,171	-		GFF4098	0.45	-0.1
4,118,171	-		GFF4098	0.45	-1.8
4,118,171	-		GFF4098	0.45	-2.4
4,118,171	-		GFF4098	0.45	-1.4
4,118,193	-		GFF4098	0.53	-1.4
4,118,226	-		GFF4098	0.64	+1.2
4,118,233	-		GFF4098	0.66	-0.5
4,118,251	+		GFF4098	0.72	-0.6
4,118,265	-		GFF4098	0.77	-0.4
4,118,265	-		GFF4098	0.77	+0.5
4,118,276	-		GFF4098	0.80	-0.1
4,118,278	+		GFF4098	0.81	-1.1
4,118,278	+		GFF4098	0.81	-0.3
4,118,286	-		GFF4098	0.84	+1.0
4,118,286	-		GFF4098	0.84	+0.1
4,118,293	+		GFF4098	0.86	-1.5
4,118,293	+		GFF4098	0.86	-0.4
4,118,293	+		GFF4098	0.86	+0.2
4,118,293	+		GFF4098	0.86	-0.7
4,118,293	+		GFF4098	0.86	-1.0
4,118,299	-		GFF4098	0.88	-0.2
4,118,301	-		GFF4098	0.89	+0.5
4,118,301	-		GFF4098	0.89	+0.7
4,118,312	-				+0.7
4,118,312	-				-1.8
4,118,348	+				+0.5
4,118,356	-				-0.1
4,118,356	-				-1.0
4,118,383	-		GFF4099	0.15	+0.8
4,118,401	-		GFF4099	0.20	+0.0
4,118,401	-		GFF4099	0.20	-0.5
4,118,417	-		GFF4099	0.24	-2.4
4,118,467	+		GFF4099	0.38	-1.4
4,118,496	+		GFF4099	0.45	+0.6
4,118,514	-		GFF4099	0.50	-0.5
4,118,533	+		GFF4099	0.55	+0.1
4,118,542	-		GFF4099	0.57	-3.0
4,118,563	-		GFF4099	0.63	+1.0
4,118,571	+		GFF4099	0.65	-1.0
4,118,571	+		GFF4099	0.65	+0.7
4,118,571	+		GFF4099	0.65	-0.5
4,118,579	-		GFF4099	0.67	-0.4
4,118,597	+		GFF4099	0.72	+0.7
4,118,625	+		GFF4099	0.79	-0.1
4,118,630	+		GFF4099	0.80	-0.4
4,118,630	+		GFF4099	0.80	-0.2
4,118,633	-		GFF4099	0.81	+0.9
4,118,635	+		GFF4099	0.82	+0.0
4,118,635	+		GFF4099	0.82	+0.7
4,118,643	-		GFF4099	0.84	-0.3
4,118,645	+		GFF4099	0.84	+0.2
4,118,645	+		GFF4099	0.84	-0.5
4,118,645	+		GFF4099	0.84	-0.8
4,118,653	-		GFF4099	0.86	+0.7
4,118,653	-		GFF4099	0.86	-0.2
4,118,665	+		GFF4099	0.90	-1.0
4,118,665	+		GFF4099	0.90	+0.2
4,118,665	+		GFF4099	0.90	-0.0
4,118,665	+		GFF4099	0.90	-2.0
4,118,665	+		GFF4099	0.90	+0.1
4,118,665	+		GFF4099	0.90	-2.3
4,118,665	+		GFF4099	0.90	-0.3
4,118,665	+		GFF4099	0.90	-0.4
4,118,665	+		GFF4099	0.90	+0.2
4,118,665	+		GFF4099	0.90	-0.7
4,118,665	+		GFF4099	0.90	+0.8
4,118,665	+		GFF4099	0.90	+0.2
4,118,673	-				-1.2
4,118,673	-				-0.9
4,118,673	-				-0.1
4,118,673	-				+1.2
4,118,673	-				+1.6
4,118,700	+				+1.0
4,118,707	+				+0.8
4,118,712	+				+0.7
4,118,717	+				+0.8
4,118,723	+				+0.9
4,118,723	+				+0.1
4,118,723	+				+0.5
4,118,723	+				-2.3
4,118,723	+				+0.8
4,118,723	+				+0.6
4,118,723	+				+0.5
4,118,723	+				-0.7
4,118,723	+				-1.4
4,118,725	-				-0.5
4,118,725	-				-1.3
4,118,726	-				+0.9
4,118,728	-				-1.1
4,118,731	-				+0.3
4,118,731	-				-1.6
4,118,731	-				-0.5
4,118,731	-				+0.7
4,118,736	-				+1.0
4,118,738	-				+0.2
4,118,739	+				-0.2
4,118,771	+				+0.6
4,118,800	-				-1.7
4,118,801	-				-0.6
4,118,813	+				-0.1
4,118,828	-				-1.3
4,118,828	-				+0.5
4,118,828	-				+0.1
4,118,828	-				-0.0
4,118,828	-				-2.7
4,118,858	+				-1.7
4,118,858	+				-0.8
4,118,858	+				-1.0
4,118,866	-		GFF4100	0.10	-1.1
4,118,866	-		GFF4100	0.10	-1.8
4,118,868	+		GFF4100	0.10	+0.3
4,118,873	+		GFF4100	0.11	+0.5
4,118,874	+		GFF4100	0.11	-0.0
4,118,874	+		GFF4100	0.11	+0.0
4,118,877	-		GFF4100	0.11	-1.3
4,118,877	-		GFF4100	0.11	-1.8
4,118,879	+		GFF4100	0.11	-0.8
4,118,881	+		GFF4100	0.11	-0.2
4,118,887	-		GFF4100	0.12	+0.9
4,118,920	+		GFF4100	0.14	-1.8
4,118,925	+		GFF4100	0.14	-0.5
4,118,933	+		GFF4100	0.15	-0.4
4,118,933	+		GFF4100	0.15	-0.1
4,118,941	-		GFF4100	0.15	+0.0
4,118,954	-		GFF4100	0.16	+0.7
4,118,967	+		GFF4100	0.17	-0.2
4,118,971	+		GFF4100	0.17	-0.6
4,118,971	+		GFF4100	0.17	-0.8
4,118,979	-		GFF4100	0.18	-0.1
4,118,994	-		GFF4100	0.19	-0.0
4,119,028	+		GFF4100	0.21	+0.8
4,119,036	-		GFF4100	0.21	+0.2
4,119,036	-		GFF4100	0.21	-0.0
4,119,036	-		GFF4100	0.21	+0.9
4,119,036	-		GFF4100	0.21	+0.7
4,119,038	+		GFF4100	0.22	+0.4
4,119,038	+		GFF4100	0.22	-0.6
4,119,038	+		GFF4100	0.22	-2.0
4,119,038	+		GFF4100	0.22	+0.5
4,119,046	-		GFF4100	0.22	-0.3
4,119,046	-		GFF4100	0.22	+0.0
4,119,046	-		GFF4100	0.22	-0.5
4,119,048	+		GFF4100	0.22	-2.3
4,119,048	+		GFF4100	0.22	+0.3
4,119,056	-		GFF4100	0.23	+0.2
4,119,056	-		GFF4100	0.23	-0.5
4,119,056	-		GFF4100	0.23	-0.8
4,119,060	+		GFF4100	0.23	+0.9
4,119,063	-		GFF4100	0.23	-0.7
4,119,065	+		GFF4100	0.23	-0.7
4,119,065	+		GFF4100	0.23	-1.7
4,119,065	+		GFF4100	0.23	-1.0
4,119,065	+		GFF4100	0.23	+1.0
4,119,065	+		GFF4100	0.23	-0.5
4,119,065	+		GFF4100	0.23	-1.4
4,119,065	+		GFF4100	0.23	-0.2
4,119,065	+		GFF4100	0.23	-2.3
4,119,073	-		GFF4100	0.24	-0.7
4,119,073	-		GFF4100	0.24	-0.2
4,119,073	-		GFF4100	0.24	-0.3
4,119,073	-		GFF4100	0.24	-1.0
4,119,073	-		GFF4100	0.24	-0.3
4,119,073	-		GFF4100	0.24	-1.5
4,119,073	-		GFF4100	0.24	-0.3
4,119,073	-		GFF4100	0.24	-0.8
4,119,073	-		GFF4100	0.24	-0.1
4,119,073	-		GFF4100	0.24	-0.2
4,119,073	-		GFF4100	0.24	-0.7
4,119,073	-		GFF4100	0.24	+0.3
4,119,073	-		GFF4100	0.24	+0.6
4,119,073	-		GFF4100	0.24	+0.4
4,119,073	-		GFF4100	0.24	-0.3
4,119,073	-		GFF4100	0.24	-1.3
4,119,080	-		GFF4100	0.24	+0.3
4,119,097	+		GFF4100	0.25	-0.0
4,119,116	+		GFF4100	0.27	+0.4
4,119,120	+		GFF4100	0.27	+0.8
4,119,123	-		GFF4100	0.27	+0.8
4,119,124	-		GFF4100	0.27	-1.8
4,119,144	+		GFF4100	0.29	+0.5
4,119,157	+		GFF4100	0.29	-0.5
4,119,157	+		GFF4100	0.29	-2.3
4,119,157	+		GFF4100	0.29	+0.8
4,119,157	+		GFF4100	0.29	-1.1
4,119,157	+		GFF4100	0.29	-1.8
4,119,157	+		GFF4100	0.29	+1.5
4,119,157	+		GFF4100	0.29	-2.6
4,119,165	-		GFF4100	0.30	-0.5
4,119,165	-		GFF4100	0.30	-0.7
4,119,165	-		GFF4100	0.30	+0.4
4,119,165	-		GFF4100	0.30	-0.4
4,119,165	-		GFF4100	0.30	+0.5
4,119,165	-		GFF4100	0.30	-1.0
4,119,165	-		GFF4100	0.30	-2.0
4,119,165	-		GFF4100	0.30	-0.7
4,119,165	-		GFF4100	0.30	+0.7
4,119,189	+		GFF4100	0.31	+0.4
4,119,197	-		GFF4100	0.32	+0.5
4,119,206	+		GFF4100	0.33	+0.5
4,119,214	-		GFF4100	0.33	+0.5
4,119,227	+		GFF4100	0.34	-0.3
4,119,227	+		GFF4100	0.34	+1.7
4,119,227	+		GFF4100	0.34	-1.9
4,119,234	-		GFF4100	0.34	+0.6
4,119,235	-		GFF4100	0.35	-0.7
4,119,235	-		GFF4100	0.35	-0.0
4,119,254	+		GFF4100	0.36	+0.9
4,119,261	-		GFF4100	0.36	-0.2
4,119,262	-		GFF4100	0.36	-1.4
4,119,281	+		GFF4100	0.38	-0.7
4,119,283	+		GFF4100	0.38	+0.1
4,119,289	-		GFF4100	0.38	-0.3
4,119,291	-		GFF4100	0.38	+0.2
4,119,291	-		GFF4100	0.38	+0.1
4,119,306	+		GFF4100	0.39	+0.8
4,119,307	+		GFF4100	0.39	+0.0
4,119,319	+		GFF4100	0.40	-1.5
4,119,319	+		GFF4100	0.40	+0.2
4,119,319	+		GFF4100	0.40	-1.9
4,119,327	-		GFF4100	0.41	-0.4
4,119,360	+		GFF4100	0.43	+1.8
4,119,382	+		GFF4100	0.44	-0.6
4,119,390	-		GFF4100	0.45	-0.7
4,119,392	+		GFF4100	0.45	+0.4
4,119,408	+		GFF4100	0.46	+0.2
4,119,411	-		GFF4100	0.46	-0.3
4,119,411	-		GFF4100	0.46	-1.5
4,119,428	+		GFF4100	0.47	+1.3
4,119,428	-		GFF4100	0.47	-0.5
4,119,428	-		GFF4100	0.47	+0.5
4,119,430	+		GFF4100	0.47	-1.0
4,119,430	-		GFF4100	0.47	-0.9
4,119,436	+		GFF4100	0.48	+0.9
4,119,438	-		GFF4100	0.48	+0.1
4,119,438	-		GFF4100	0.48	+1.1
4,119,438	-		GFF4100	0.48	+0.7
4,119,449	-		GFF4100	0.49	-2.0
4,119,462	+		GFF4100	0.49	+1.0
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