Strain Fitness in Sphingobium sp. HT1-2 around GFF4097

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
4,116,521	-		GFF4096	0.35	+0.9
4,116,523	+		GFF4096	0.35	-0.1
4,116,526	-		GFF4096	0.35	+0.2
4,116,531	-		GFF4096	0.36	+1.2
4,116,531	-		GFF4096	0.36	-2.5
4,116,531	-		GFF4096	0.36	+1.4
4,116,539	+		GFF4096	0.36	+0.7
4,116,545	-		GFF4096	0.37	+0.1
4,116,548	-		GFF4096	0.37	-0.1
4,116,572	+		GFF4096	0.39	-0.9
4,116,578	+		GFF4096	0.39	-0.2
4,116,583	+		GFF4096	0.39	-0.5
4,116,585	+		GFF4096	0.39	-0.1
4,116,585	+		GFF4096	0.39	+1.1
4,116,585	+		GFF4096	0.39	+0.6
4,116,585	+		GFF4096	0.39	+0.3
4,116,585	+		GFF4096	0.39	+0.4
4,116,585	+		GFF4096	0.39	-0.3
4,116,585	-		GFF4096	0.39	+0.6
4,116,590	+		GFF4096	0.40	+0.2
4,116,591	-		GFF4096	0.40	-0.0
4,116,593	-		GFF4096	0.40	+0.9
4,116,593	-		GFF4096	0.40	+0.5
4,116,593	-		GFF4096	0.40	+0.4
4,116,593	-		GFF4096	0.40	-1.0
4,116,593	-		GFF4096	0.40	-0.5
4,116,653	-		GFF4096	0.44	-0.0
4,116,660	-		GFF4096	0.44	+0.5
4,116,660	-		GFF4096	0.44	-0.1
4,116,668	+		GFF4096	0.45	-1.4
4,116,685	+		GFF4096	0.46	-0.3
4,116,685	+		GFF4096	0.46	-0.0
4,116,685	+		GFF4096	0.46	+1.0
4,116,690	+		GFF4096	0.46	+1.0
4,116,693	-		GFF4096	0.47	-0.1
4,116,693	-		GFF4096	0.47	-0.6
4,116,693	-		GFF4096	0.47	+0.8
4,116,693	-		GFF4096	0.47	-0.5
4,116,695	+		GFF4096	0.47	+1.6
4,116,743	+		GFF4096	0.50	+0.0
4,116,744	-		GFF4096	0.50	-1.2
4,116,746	-		GFF4096	0.50	-0.4
4,116,746	-		GFF4096	0.50	-2.3
4,116,746	-		GFF4096	0.50	-0.8
4,116,746	-		GFF4096	0.50	+0.6
4,116,751	-		GFF4096	0.51	-0.7
4,116,755	-		GFF4096	0.51	-0.5
4,116,756	-		GFF4096	0.51	-1.7
4,116,779	+		GFF4096	0.52	-0.8
4,116,787	-		GFF4096	0.53	+0.2
4,116,787	-		GFF4096	0.53	-0.1
4,116,831	-		GFF4096	0.56	+0.8
4,116,833	+		GFF4096	0.56	+0.6
4,116,835	-		GFF4096	0.56	+1.2
4,116,841	-		GFF4096	0.57	+1.2
4,116,841	-		GFF4096	0.57	-0.4
4,116,841	-		GFF4096	0.57	-1.1
4,116,841	-		GFF4096	0.57	+0.3
4,116,841	-		GFF4096	0.57	-1.0
4,116,855	-		GFF4096	0.58	-1.8
4,116,868	+		GFF4096	0.58	-0.9
4,116,868	+		GFF4096	0.58	-0.9
4,116,869	+		GFF4096	0.58	-2.7
4,116,876	-		GFF4096	0.59	-0.7
4,116,877	-		GFF4096	0.59	-0.1
4,116,880	+		GFF4096	0.59	+0.1
4,116,880	+		GFF4096	0.59	+0.3
4,116,880	+		GFF4096	0.59	+0.8
4,116,880	+		GFF4096	0.59	-1.0
4,116,880	+		GFF4096	0.59	+0.6
4,116,880	+		GFF4096	0.59	-1.4
4,116,913	-		GFF4096	0.61	-0.5
4,116,928	+		GFF4096	0.62	-0.1
4,116,928	+		GFF4096	0.62	-0.2
4,116,928	+		GFF4096	0.62	-0.0
4,116,928	+		GFF4096	0.62	-0.2
4,116,942	+		GFF4096	0.63	-0.2
4,116,942	+		GFF4096	0.63	-1.1
4,116,950	-		GFF4096	0.64	-0.8
4,116,956	+		GFF4096	0.64	-0.1
4,116,961	+		GFF4096	0.65	-0.1
4,116,995	-		GFF4096	0.67	+0.1
4,116,997	+		GFF4096	0.67	-0.9
4,117,010	-		GFF4096	0.68	+0.4
4,117,027	+		GFF4096	0.69	-1.2
4,117,027	+		GFF4096	0.69	+0.9
4,117,035	-		GFF4096	0.70	-2.0
4,117,035	-		GFF4096	0.70	+0.7
4,117,042	+		GFF4096	0.70	-2.3
4,117,042	+		GFF4096	0.70	-0.8
4,117,048	+		GFF4096	0.70	+0.8
4,117,050	-		GFF4096	0.71	-0.1
4,117,057	+		GFF4096	0.71	+0.9
4,117,063	-		GFF4096	0.72	-0.9
4,117,065	-		GFF4096	0.72	-1.4
4,117,065	-		GFF4096	0.72	+0.2
4,117,065	-		GFF4096	0.72	-1.1
4,117,067	+		GFF4096	0.72	-0.0
4,117,067	+		GFF4096	0.72	-0.1
4,117,067	+		GFF4096	0.72	-2.8
4,117,067	+		GFF4096	0.72	+0.0
4,117,075	-		GFF4096	0.72	-0.4
4,117,075	-		GFF4096	0.72	-0.5
4,117,078	+		GFF4096	0.73	-1.0
4,117,118	-		GFF4096	0.75	+0.4
4,117,132	-		GFF4096	0.76	-0.5
4,117,136	-		GFF4096	0.76	-1.2
4,117,136	-		GFF4096	0.76	+0.5
4,117,150	+		GFF4096	0.77	+0.2
4,117,163	+		GFF4096	0.78	+1.0
4,117,163	+		GFF4096	0.78	-1.2
4,117,163	+		GFF4096	0.78	+0.5
4,117,168	+		GFF4096	0.79	-0.2
4,117,168	+		GFF4096	0.79	+0.1
4,117,168	+		GFF4096	0.79	+1.0
4,117,173	+		GFF4096	0.79	-0.8
4,117,173	+		GFF4096	0.79	+1.5
4,117,173	+		GFF4096	0.79	+0.0
4,117,173	+		GFF4096	0.79	-1.3
4,117,173	+		GFF4096	0.79	-0.5
4,117,173	+		GFF4096	0.79	-1.4
4,117,173	+		GFF4096	0.79	-0.0
4,117,176	-		GFF4096	0.79	-0.1
4,117,176	-		GFF4096	0.79	-1.8
4,117,176	-		GFF4096	0.79	-1.3
4,117,176	-		GFF4096	0.79	+2.0
4,117,176	-		GFF4096	0.79	-0.1
4,117,180	+		GFF4096	0.79	-0.4
4,117,181	-		GFF4096	0.79	+0.9
4,117,181	-		GFF4096	0.79	-0.0
4,117,181	-		GFF4096	0.79	-0.7
4,117,181	-		GFF4096	0.79	-0.3
4,117,181	-		GFF4096	0.79	+0.3
4,117,181	-		GFF4096	0.79	+0.3
4,117,181	-		GFF4096	0.79	+0.8
4,117,181	-		GFF4096	0.79	-1.1
4,117,181	-		GFF4096	0.79	+0.3
4,117,181	-		GFF4096	0.79	+0.0
4,117,191	+		GFF4096	0.80	-2.0
4,117,196	+		GFF4096	0.80	+0.2
4,117,196	+		GFF4096	0.80	+0.0
4,117,196	+		GFF4096	0.80	-0.4
4,117,204	-		GFF4096	0.81	+0.6
4,117,204	-		GFF4096	0.81	+1.6
4,117,206	+		GFF4096	0.81	-0.3
4,117,214	-		GFF4096	0.82	-0.8
4,117,214	-		GFF4096	0.82	-0.8
4,117,214	-		GFF4096	0.82	-0.4
4,117,233	+		GFF4096	0.83	+0.5
4,117,253	+		GFF4096	0.84	-3.2
4,117,253	+		GFF4096	0.84	+0.3
4,117,253	+		GFF4096	0.84	-0.4
4,117,261	-		GFF4096	0.85	+0.3
4,117,261	-		GFF4096	0.85	+0.1
4,117,266	-		GFF4096	0.85	+0.1
4,117,266	-		GFF4096	0.85	+0.3
4,117,277	+		GFF4096	0.86	-1.5
4,117,277	+		GFF4096	0.86	-0.4
4,117,277	+		GFF4096	0.86	+0.3
4,117,277	+		GFF4096	0.86	+1.0
4,117,277	+		GFF4096	0.86	+0.2
4,117,282	+		GFF4096	0.86	+0.0
4,117,282	+		GFF4096	0.86	+1.0
4,117,282	+		GFF4096	0.86	+0.1
4,117,282	+		GFF4096	0.86	-1.0
4,117,285	-		GFF4096	0.86	+0.6
4,117,285	-		GFF4096	0.86	-0.5
4,117,285	-		GFF4096	0.86	+0.5
4,117,285	-		GFF4096	0.86	-0.7
4,117,285	-		GFF4096	0.86	-0.7
4,117,285	-		GFF4096	0.86	+0.5
4,117,285	-		GFF4096	0.86	-0.8
4,117,285	-		GFF4096	0.86	+1.3
4,117,287	+		GFF4096	0.87	-2.5
4,117,287	+		GFF4096	0.87	+0.8
4,117,287	+		GFF4096	0.87	-0.6
4,117,290	-		GFF4096	0.87	-1.3
4,117,290	-		GFF4096	0.87	-0.2
4,117,290	-		GFF4096	0.87	+0.8
4,117,290	-		GFF4096	0.87	+1.5
4,117,290	-		GFF4096	0.87	-0.6
4,117,295	-		GFF4096	0.87	-0.2
4,117,295	-		GFF4096	0.87	-1.1
4,117,302	+		GFF4096	0.88	+0.3
4,117,318	-		GFF4096	0.89	+0.1
4,117,318	-		GFF4096	0.89	+0.6
4,117,320	-		GFF4096	0.89	+0.2
4,117,346	+				-0.1
4,117,346	+				+0.3
4,117,400	+				-0.1
4,117,401	+				+1.1
4,117,411	-				+0.1
4,117,437	+				-1.5
4,117,451	-				+1.0
4,117,469	+				-1.8
4,117,469	+				+0.3
4,117,527	+				+0.3
4,117,532	+				-1.0
4,117,532	+				-2.0
4,117,532	+				+0.4
4,117,532	+				-0.2
4,117,532	+				+0.2
4,117,532	+				-0.5
4,117,537	+				+0.5
4,117,540	-				-0.6
4,117,540	-				-0.4
4,117,540	-				+0.7
4,117,540	-				+0.3
4,117,540	-				+0.3
4,117,540	-				+0.7
4,117,540	-				+0.0
4,117,540	-				-0.9
4,117,540	-				+0.2
4,117,540	-				+0.1
4,117,540	-				-1.0
4,117,545	-				+1.2
4,117,547	+				+0.0
4,117,555	-				+0.8
4,117,589	+		GFF4097	0.16	+0.6
4,117,604	+		GFF4097	0.19	-0.3
4,117,604	+		GFF4097	0.19	+0.7
4,117,608	-		GFF4097	0.20	+0.3
4,117,612	-		GFF4097	0.21	-0.9
4,117,612	-		GFF4097	0.21	-1.8
4,117,612	-		GFF4097	0.21	+0.5
4,117,612	-		GFF4097	0.21	-0.2
4,117,612	-		GFF4097	0.21	-0.1
4,117,612	-		GFF4097	0.21	+0.0
4,117,634	-		GFF4097	0.26	+0.5
4,117,641	+		GFF4097	0.28	+0.6
4,117,686	-		GFF4097	0.38	-0.0
4,117,730	-		GFF4097	0.49	+0.9
4,117,746	+		GFF4097	0.52	-1.3
4,117,746	+		GFF4097	0.52	-0.0
4,117,746	+		GFF4097	0.52	-1.5
4,117,749	-		GFF4097	0.53	-0.3
4,117,754	+		GFF4097	0.54	-0.1
4,117,754	+		GFF4097	0.54	+0.3
4,117,754	-		GFF4097	0.54	-0.8
4,117,755	-		GFF4097	0.55	-1.0
4,117,759	+		GFF4097	0.55	+0.4
4,117,762	-		GFF4097	0.56	-1.8
4,117,765	+		GFF4097	0.57	+0.6
4,117,767	-		GFF4097	0.57	+0.2
4,117,770	+		GFF4097	0.58	-1.2
4,117,795	-		GFF4097	0.64	-2.2
4,117,843	-		GFF4097	0.75	-1.0
4,117,848	+		GFF4097	0.76	-0.3
4,117,866	+		GFF4097	0.80	-0.1
4,117,866	+		GFF4097	0.80	-0.3
4,117,878	+		GFF4097	0.83	-1.4
4,117,885	-		GFF4097	0.85	-0.7
4,117,899	+		GFF4097	0.88	-1.2
4,117,904	+		GFF4097	0.89	-2.7
4,117,907	-				+0.5
4,117,907	-				+1.0
4,117,912	-				-0.1
4,117,918	+				-0.8
4,117,918	+				-0.3
4,117,918	+				+0.3
4,117,925	-				+0.8
4,117,944	+				-0.4
4,117,944	+				-0.0
4,117,944	+				-0.3
4,117,944	+				+0.2
4,117,944	+				-1.7
4,117,944	+				-0.8
4,117,944	+				-0.4
4,117,944	+				+0.6
4,117,944	+				+0.9
4,117,944	+				-1.0
4,117,944	+				+0.4
4,117,952	-				+0.0
4,117,952	-				+0.1
4,117,952	-				-1.2
4,117,952	-				+0.1
4,117,952	-				-0.9
4,117,952	-				-2.0
4,117,952	-				+0.6
4,117,952	-				-0.1
4,117,952	-				+0.9
4,117,955	+				-1.6
4,117,968	+				+0.2
4,118,023	-				-1.2
4,118,033	-				+0.7
4,118,033	-				-0.5
4,118,050	+				-0.2
4,118,050	+				-0.9
4,118,050	+				-3.3
4,118,062	+				-1.5
4,118,092	-		GFF4098	0.19	-0.3
4,118,099	+		GFF4098	0.21	-1.0
4,118,106	+		GFF4098	0.24	-0.0
4,118,111	+		GFF4098	0.25	+0.1
4,118,111	+		GFF4098	0.25	-1.6
4,118,111	+		GFF4098	0.25	-0.4
4,118,111	+		GFF4098	0.25	+0.0
4,118,116	+		GFF4098	0.27	-0.3
4,118,116	+		GFF4098	0.27	-0.1
4,118,116	+		GFF4098	0.27	-1.8
4,118,119	-		GFF4098	0.28	-0.7
4,118,119	-		GFF4098	0.28	-1.2
4,118,121	+		GFF4098	0.29	+0.2
4,118,141	+		GFF4098	0.35	+0.1
4,118,146	+		GFF4098	0.37	-0.8
4,118,146	+		GFF4098	0.37	-0.5
4,118,146	+		GFF4098	0.37	-2.0
4,118,146	+		GFF4098	0.37	+0.2
4,118,154	-		GFF4098	0.40	-2.1
4,118,154	-		GFF4098	0.40	+0.3
4,118,154	-		GFF4098	0.40	-0.3
4,118,154	-		GFF4098	0.40	+0.5
4,118,154	-		GFF4098	0.40	-1.0
4,118,154	-		GFF4098	0.40	-1.2
4,118,162	-		GFF4098	0.42	+0.1
4,118,163	+		GFF4098	0.43	-1.3
4,118,163	+		GFF4098	0.43	-2.0
4,118,163	+		GFF4098	0.43	-1.4
4,118,163	+		GFF4098	0.43	-2.3
4,118,163	+		GFF4098	0.43	-0.7
4,118,163	+		GFF4098	0.43	-0.4
4,118,163	+		GFF4098	0.43	-0.5
4,118,171	-		GFF4098	0.45	-0.1
4,118,171	-		GFF4098	0.45	-1.8
4,118,171	-		GFF4098	0.45	-2.4
4,118,171	-		GFF4098	0.45	-1.4
4,118,193	-		GFF4098	0.53	-1.4
4,118,226	-		GFF4098	0.64	+1.2
4,118,233	-		GFF4098	0.66	-0.5
4,118,251	+		GFF4098	0.72	-0.6
4,118,265	-		GFF4098	0.77	-0.4
4,118,265	-		GFF4098	0.77	+0.5
4,118,276	-		GFF4098	0.80	-0.1
4,118,278	+		GFF4098	0.81	-1.1
4,118,278	+		GFF4098	0.81	-0.3
4,118,286	-		GFF4098	0.84	+1.0
4,118,286	-		GFF4098	0.84	+0.1
4,118,293	+		GFF4098	0.86	-1.5
4,118,293	+		GFF4098	0.86	-0.4
4,118,293	+		GFF4098	0.86	+0.2
4,118,293	+		GFF4098	0.86	-0.7
4,118,293	+		GFF4098	0.86	-1.0
4,118,299	-		GFF4098	0.88	-0.2
4,118,301	-		GFF4098	0.89	+0.5
4,118,301	-		GFF4098	0.89	+0.7
4,118,312	-				+0.7
4,118,312	-				-1.8
4,118,348	+				+0.5
4,118,356	-				-0.1
4,118,356	-				-1.0
4,118,383	-		GFF4099	0.15	+0.8
4,118,401	-		GFF4099	0.20	+0.0
4,118,401	-		GFF4099	0.20	-0.5
4,118,417	-		GFF4099	0.24	-2.4
4,118,467	+		GFF4099	0.38	-1.4
4,118,496	+		GFF4099	0.45	+0.6
4,118,514	-		GFF4099	0.50	-0.5
4,118,533	+		GFF4099	0.55	+0.1
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