Strain Fitness in Sphingobium sp. HT1-2 around GFF4012

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
4,039,092	-		GFF4010	0.70	+0.6
4,039,111	+		GFF4010	0.73	-0.1
4,039,113	+		GFF4010	0.74	-0.4
4,039,113	+		GFF4010	0.74	-0.0
4,039,118	+		GFF4010	0.74	+0.5
4,039,119	-		GFF4010	0.74	-0.4
4,039,119	-		GFF4010	0.74	+0.8
4,039,121	+		GFF4010	0.75	-1.0
4,039,126	-		GFF4010	0.75	-1.3
4,039,129	-		GFF4010	0.76	+0.1
4,039,131	-		GFF4010	0.76	+1.3
4,039,182	+		GFF4010	0.84	-1.8
4,039,182	+		GFF4010	0.84	+1.6
4,039,182	+		GFF4010	0.84	+0.4
4,039,182	+		GFF4010	0.84	-0.9
4,039,182	+		GFF4010	0.84	-0.6
4,039,182	+		GFF4010	0.84	+0.3
4,039,182	+		GFF4010	0.84	-1.3
4,039,185	-		GFF4010	0.84	+0.2
4,039,190	-		GFF4010	0.85	+0.8
4,039,216	-		GFF4010	0.89	-1.4
4,039,229	+				-0.3
4,039,237	-				+0.7
4,039,248	-				-0.3
4,039,286	+				+1.0
4,039,286	+				-1.5
4,039,286	+				-1.8
4,039,286	+				+0.3
4,039,286	+				-0.3
4,039,286	+				+0.4
4,039,294	-				-1.6
4,039,294	-				+0.1
4,039,294	-				+1.5
4,039,294	-				-1.8
4,039,294	-				+1.2
4,039,304	+				-0.8
4,039,345	-				+0.4
4,039,358	+				+0.5
4,039,359	-				-0.8
4,039,366	-				+0.8
4,039,368	+				-1.4
4,039,368	+				-1.5
4,039,368	+				+1.3
4,039,368	+				-1.5
4,039,368	+				-0.0
4,039,368	+				-0.1
4,039,368	+				-0.0
4,039,368	+				+0.5
4,039,368	+				-0.1
4,039,368	+				+1.4
4,039,369	+				-0.3
4,039,376	-		GFF4011	0.10	-1.0
4,039,376	-		GFF4011	0.10	-1.2
4,039,376	-		GFF4011	0.10	+0.0
4,039,376	-		GFF4011	0.10	-0.0
4,039,376	-		GFF4011	0.10	-1.3
4,039,376	-		GFF4011	0.10	-1.0
4,039,376	-		GFF4011	0.10	+0.6
4,039,376	-		GFF4011	0.10	+1.1
4,039,376	-		GFF4011	0.10	-1.1
4,039,376	-		GFF4011	0.10	-0.1
4,039,376	-		GFF4011	0.10	-0.5
4,039,376	-		GFF4011	0.10	-0.7
4,039,376	-		GFF4011	0.10	-0.5
4,039,376	-		GFF4011	0.10	-1.4
4,039,377	-		GFF4011	0.10	+0.1
4,039,391	+		GFF4011	0.12	-2.2
4,039,391	+		GFF4011	0.12	+0.9
4,039,394	-		GFF4011	0.12	+0.3
4,039,396	+		GFF4011	0.13	-0.0
4,039,396	+		GFF4011	0.13	+0.2
4,039,399	-		GFF4011	0.13	-0.7
4,039,399	-		GFF4011	0.13	-0.3
4,039,399	-		GFF4011	0.13	-0.1
4,039,399	-		GFF4011	0.13	+0.7
4,039,399	-		GFF4011	0.13	+1.2
4,039,442	+		GFF4011	0.19	-0.7
4,039,447	+		GFF4011	0.19	+2.0
4,039,455	-		GFF4011	0.20	-1.0
4,039,457	+		GFF4011	0.20	+0.8
4,039,463	+		GFF4011	0.21	+0.1
4,039,494	-		GFF4011	0.25	-0.5
4,039,512	+		GFF4011	0.27	+0.2
4,039,515	-		GFF4011	0.28	+0.5
4,039,515	-		GFF4011	0.28	-2.0
4,039,540	-		GFF4011	0.31	-0.7
4,039,541	+		GFF4011	0.31	+0.2
4,039,541	+		GFF4011	0.31	-1.7
4,039,541	+		GFF4011	0.31	-0.6
4,039,541	+		GFF4011	0.31	-0.9
4,039,541	+		GFF4011	0.31	-0.2
4,039,541	+		GFF4011	0.31	-0.3
4,039,541	+		GFF4011	0.31	-0.2
4,039,541	+		GFF4011	0.31	+1.7
4,039,549	-		GFF4011	0.32	+1.3
4,039,549	-		GFF4011	0.32	-0.3
4,039,549	-		GFF4011	0.32	-0.2
4,039,549	-		GFF4011	0.32	-0.0
4,039,549	-		GFF4011	0.32	-0.9
4,039,549	-		GFF4011	0.32	-0.6
4,039,549	-		GFF4011	0.32	+0.4
4,039,549	-		GFF4011	0.32	-1.9
4,039,549	-		GFF4011	0.32	-0.2
4,039,549	-		GFF4011	0.32	+0.1
4,039,549	-		GFF4011	0.32	+0.2
4,039,551	+		GFF4011	0.32	-0.5
4,039,565	+		GFF4011	0.34	-1.0
4,039,567	+		GFF4011	0.34	-0.8
4,039,567	+		GFF4011	0.34	-1.5
4,039,567	+		GFF4011	0.34	+0.4
4,039,567	+		GFF4011	0.34	-0.8
4,039,567	+		GFF4011	0.34	+0.2
4,039,567	+		GFF4011	0.34	+0.2
4,039,567	+		GFF4011	0.34	+0.4
4,039,567	+		GFF4011	0.34	+0.3
4,039,570	-		GFF4011	0.35	+0.7
4,039,572	+		GFF4011	0.35	-0.3
4,039,575	-		GFF4011	0.36	+0.4
4,039,575	-		GFF4011	0.36	-0.4
4,039,577	+		GFF4011	0.36	+0.3
4,039,577	+		GFF4011	0.36	+0.7
4,039,579	-		GFF4011	0.36	+0.2
4,039,580	-		GFF4011	0.36	+0.2
4,039,590	+		GFF4011	0.37	-0.3
4,039,632	-		GFF4011	0.43	+0.2
4,039,633	+		GFF4011	0.43	+0.9
4,039,641	-		GFF4011	0.44	-1.3
4,039,655	+		GFF4011	0.46	-0.3
4,039,655	+		GFF4011	0.46	+0.2
4,039,655	+		GFF4011	0.46	-2.0
4,039,655	+		GFF4011	0.46	+0.4
4,039,655	+		GFF4011	0.46	+1.6
4,039,655	+		GFF4011	0.46	-0.2
4,039,655	+		GFF4011	0.46	-1.7
4,039,655	+		GFF4011	0.46	-0.3
4,039,655	+		GFF4011	0.46	-2.6
4,039,655	+		GFF4011	0.46	-1.9
4,039,655	+		GFF4011	0.46	-0.3
4,039,663	-		GFF4011	0.47	-1.8
4,039,663	-		GFF4011	0.47	+0.8
4,039,663	-		GFF4011	0.47	-0.1
4,039,663	-		GFF4011	0.47	-1.4
4,039,663	-		GFF4011	0.47	+0.3
4,039,663	-		GFF4011	0.47	-0.8
4,039,663	-		GFF4011	0.47	-0.7
4,039,663	-		GFF4011	0.47	-1.4
4,039,663	-		GFF4011	0.47	-2.9
4,039,663	-		GFF4011	0.47	-0.4
4,039,663	-		GFF4011	0.47	-0.4
4,039,663	-		GFF4011	0.47	+0.3
4,039,663	-		GFF4011	0.47	+0.1
4,039,663	-		GFF4011	0.47	+0.6
4,039,663	-		GFF4011	0.47	-1.5
4,039,663	-		GFF4011	0.47	+1.3
4,039,663	-		GFF4011	0.47	-0.7
4,039,663	-		GFF4011	0.47	-2.7
4,039,663	-		GFF4011	0.47	+0.8
4,039,663	-		GFF4011	0.47	+1.0
4,039,663	-		GFF4011	0.47	-1.0
4,039,663	-		GFF4011	0.47	-0.7
4,039,663	-		GFF4011	0.47	+0.3
4,039,664	-		GFF4011	0.47	-2.2
4,039,670	+		GFF4011	0.48	+0.3
4,039,689	+		GFF4011	0.50	+0.6
4,039,694	+		GFF4011	0.51	-0.5
4,039,699	+		GFF4011	0.51	-0.5
4,039,702	-		GFF4011	0.52	+0.6
4,039,712	-		GFF4011	0.53	-0.0
4,039,712	-		GFF4011	0.53	-0.3
4,039,717	-		GFF4011	0.54	-1.4
4,039,725	+		GFF4011	0.55	+0.1
4,039,725	+		GFF4011	0.55	-1.5
4,039,733	-		GFF4011	0.56	-0.7
4,039,741	-		GFF4011	0.57	-1.2
4,039,751	-		GFF4011	0.58	+0.1
4,039,752	+		GFF4011	0.58	+0.7
4,039,759	+		GFF4011	0.59	+0.8
4,039,759	+		GFF4011	0.59	+0.6
4,039,764	+		GFF4011	0.60	-0.7
4,039,764	+		GFF4011	0.60	-1.8
4,039,764	+		GFF4011	0.60	+0.9
4,039,764	+		GFF4011	0.60	+0.3
4,039,767	-		GFF4011	0.60	-0.5
4,039,769	+		GFF4011	0.60	-1.4
4,039,769	+		GFF4011	0.60	-0.3
4,039,769	+		GFF4011	0.60	-1.1
4,039,769	+		GFF4011	0.60	-3.0
4,039,769	+		GFF4011	0.60	-0.4
4,039,769	+		GFF4011	0.60	+0.4
4,039,769	+		GFF4011	0.60	+0.2
4,039,769	+		GFF4011	0.60	-0.7
4,039,769	+		GFF4011	0.60	+1.1
4,039,769	+		GFF4011	0.60	-1.1
4,039,769	+		GFF4011	0.60	+0.4
4,039,769	+		GFF4011	0.60	+0.2
4,039,769	+		GFF4011	0.60	+0.5
4,039,769	+		GFF4011	0.60	-0.5
4,039,769	+		GFF4011	0.60	-1.2
4,039,769	+		GFF4011	0.60	-0.2
4,039,769	+		GFF4011	0.60	-0.5
4,039,769	+		GFF4011	0.60	-1.2
4,039,769	+		GFF4011	0.60	-0.1
4,039,769	+		GFF4011	0.60	-0.1
4,039,769	+		GFF4011	0.60	-1.1
4,039,769	+		GFF4011	0.60	-2.2
4,039,769	+		GFF4011	0.60	-1.9
4,039,769	+		GFF4011	0.60	+0.4
4,039,769	+		GFF4011	0.60	+0.7
4,039,769	+		GFF4011	0.60	+0.5
4,039,769	+		GFF4011	0.60	+0.3
4,039,769	+		GFF4011	0.60	-0.9
4,039,769	+		GFF4011	0.60	-0.8
4,039,769	+		GFF4011	0.60	-1.4
4,039,769	+		GFF4011	0.60	-0.8
4,039,772	-		GFF4011	0.61	-0.2
4,039,772	-		GFF4011	0.61	+0.2
4,039,777	-		GFF4011	0.61	-0.8
4,039,777	-		GFF4011	0.61	-0.6
4,039,777	-		GFF4011	0.61	-0.9
4,039,777	-		GFF4011	0.61	-0.2
4,039,777	-		GFF4011	0.61	-0.3
4,039,777	-		GFF4011	0.61	-1.9
4,039,777	-		GFF4011	0.61	-1.3
4,039,777	-		GFF4011	0.61	+0.2
4,039,777	-		GFF4011	0.61	+0.2
4,039,777	-		GFF4011	0.61	+0.4
4,039,777	-		GFF4011	0.61	-1.7
4,039,777	-		GFF4011	0.61	-1.8
4,039,777	-		GFF4011	0.61	-1.2
4,039,777	-		GFF4011	0.61	-1.0
4,039,777	-		GFF4011	0.61	-0.2
4,039,777	-		GFF4011	0.61	-1.0
4,039,777	-		GFF4011	0.61	+0.0
4,039,777	-		GFF4011	0.61	-1.2
4,039,777	-		GFF4011	0.61	-0.2
4,039,777	-		GFF4011	0.61	-1.9
4,039,777	-		GFF4011	0.61	-0.1
4,039,777	-		GFF4011	0.61	-1.6
4,039,777	-		GFF4011	0.61	-0.0
4,039,777	-		GFF4011	0.61	+0.5
4,039,777	-		GFF4011	0.61	+1.3
4,039,777	-		GFF4011	0.61	+0.4
4,039,777	-		GFF4011	0.61	+0.0
4,039,777	-		GFF4011	0.61	+0.2
4,039,777	-		GFF4011	0.61	+0.1
4,039,777	-		GFF4011	0.61	-1.2
4,039,777	-		GFF4011	0.61	+0.1
4,039,777	-		GFF4011	0.61	+0.6
4,039,778	-		GFF4011	0.61	-0.5
4,039,795	+		GFF4011	0.64	-0.4
4,039,795	+		GFF4011	0.64	+0.5
4,039,798	+		GFF4011	0.64	-0.2
4,039,803	-		GFF4011	0.65	-1.3
4,039,833	+		GFF4011	0.68	-1.1
4,039,883	+		GFF4011	0.75	-1.3
4,039,884	+		GFF4011	0.75	-0.8
4,039,892	-		GFF4011	0.76	-1.4
4,039,893	-		GFF4011	0.76	+0.8
4,039,900	-		GFF4011	0.77	+1.7
4,039,922	+		GFF4011	0.80	+0.3
4,039,922	-		GFF4011	0.80	-0.1
4,039,945	+		GFF4011	0.83	+0.2
4,039,948	+		GFF4011	0.83	-1.0
4,039,954	+		GFF4011	0.84	-0.3
4,039,977	-		GFF4011	0.87	-0.9
4,039,977	-		GFF4011	0.87	-0.3
4,039,982	+		GFF4011	0.87	+1.4
4,039,982	+		GFF4011	0.87	-0.7
4,039,983	-		GFF4011	0.88	+0.5
4,039,990	-		GFF4011	0.89	+0.7
4,039,992	+		GFF4011	0.89	-0.6
4,039,992	+		GFF4011	0.89	+0.5
4,040,000	-		GFF4011	0.90	-1.3
4,040,010	-				+0.6
4,040,015	-				-0.7
4,040,032	-				-1.2
4,040,033	+				-0.3
4,040,034	-				+0.2
4,040,046	-				+0.7
4,040,053	+				+0.6
4,040,055	+				-0.3
4,040,063	-				-2.3
4,040,063	-				+1.7
4,040,063	-				+0.2
4,040,063	-				+0.1
4,040,083	+				+0.5
4,040,083	+				-0.7
4,040,102	+				-1.6
4,040,109	+				-0.6
4,040,142	+		GFF4012	0.11	-0.2
4,040,182	+		GFF4012	0.18	+0.4
4,040,183	+		GFF4012	0.19	-0.9
4,040,273	-		GFF4012	0.34	-1.5
4,040,332	+		GFF4012	0.44	-0.5
4,040,332	+		GFF4012	0.44	+1.3
4,040,340	-		GFF4012	0.46	-0.9
4,040,342	+		GFF4012	0.46	-2.0
4,040,423	+		GFF4012	0.60	-0.3
4,040,430	+		GFF4012	0.61	-1.9
4,040,430	+		GFF4012	0.61	+0.4
4,040,431	-		GFF4012	0.62	+0.4
4,040,438	-		GFF4012	0.63	+0.6
4,040,438	-		GFF4012	0.63	+0.3
4,040,462	+		GFF4012	0.67	-0.5
4,040,475	-		GFF4012	0.69	-0.2
4,040,475	-		GFF4012	0.69	-0.4
4,040,485	-		GFF4012	0.71	-0.6
4,040,503	+		GFF4012	0.74	+0.1
4,040,503	+		GFF4012	0.74	+0.3
4,040,511	-		GFF4012	0.76	-0.6
4,040,533	-		GFF4012	0.79	+0.8
4,040,536	-		GFF4012	0.80	+0.2
4,040,550	+		GFF4012	0.82	+0.8
4,040,550	+		GFF4012	0.82	-0.2
4,040,550	+		GFF4012	0.82	+0.4
4,040,558	-		GFF4012	0.84	+0.9
4,040,574	+		GFF4012	0.86	-1.6
4,040,577	-		GFF4012	0.87	+0.5
4,040,594	+				-1.6
4,040,594	+				-0.8
4,040,599	+				-1.5
4,040,613	+				-0.5
4,040,618	+				-0.9
4,040,618	+				-0.6
4,040,618	+				-1.7
4,040,618	+				+0.9
4,040,638	+				+0.4
4,040,643	+				-2.1
4,040,646	-				-0.4
4,040,646	-				+0.3
4,040,660	+				-1.2
4,040,660	+				-0.1
4,040,660	+				-0.5
4,040,660	+				-0.3
4,040,660	+				-0.2
4,040,660	+				-0.9
4,040,660	+				-0.2
4,040,660	+				-2.3
4,040,660	+				-0.5
4,040,660	+				-0.8
4,040,660	+				+0.2
4,040,660	+				-0.1
4,040,660	+				-1.6
4,040,660	+				+1.1
4,040,660	+				-0.9
4,040,660	+				+0.0
4,040,660	+				-0.5
4,040,660	+				-2.5
4,040,660	+				+0.7
4,040,660	+				+0.2
4,040,663	-				+1.3
4,040,665	+				-0.7
4,040,665	+				-0.1
4,040,665	+				+0.1
4,040,665	+				-0.2
4,040,668	-				-0.4
4,040,668	-				+0.1
4,040,668	-				+0.9
4,040,668	-				-0.3
4,040,668	-				-0.2
4,040,668	-				+0.6
4,040,668	-				-1.4
4,040,668	-				-0.5
4,040,668	-				+0.7
4,040,668	-				-0.0
4,040,668	-				-2.2
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