Strain Fitness in Sphingobium sp. HT1-2 around GFF3898

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
3,934,639	-				+0.1
3,934,639	-				+0.3
3,934,773	+				+0.2
3,934,773	+				-0.4
3,934,773	+				+0.1
3,934,781	-				+0.3
3,934,781	-				+0.4
3,934,797	+				-1.4
3,934,825	+				-0.8
3,934,825	+				+0.2
3,934,825	+				+0.0
3,934,829	+				-0.9
3,934,833	-				+0.7
3,934,837	-				+0.3
3,934,838	+				+1.9
3,934,858	+		GFF3897	0.15	-0.5
3,934,878	+		GFF3897	0.22	-1.5
3,934,929	+		GFF3897	0.39	-0.1
3,934,937	-		GFF3897	0.42	-0.3
3,934,937	-		GFF3897	0.42	-0.9
3,934,949	-		GFF3897	0.46	-1.4
3,934,949	-		GFF3897	0.46	-1.3
3,934,997	-		GFF3897	0.62	+0.1
3,935,013	+		GFF3897	0.67	+0.9
3,935,033	+		GFF3897	0.74	-0.2
3,935,048	-		GFF3897	0.79	-0.2
3,935,056	+		GFF3897	0.82	+0.3
3,935,094	-				-1.5
3,935,094	-				+0.4
3,935,096	-				-0.3
3,935,096	-				-0.9
3,935,103	+				+0.9
3,935,103	+				-0.5
3,935,103	+				-2.0
3,935,111	-				-0.2
3,935,111	-				-0.1
3,935,122	+				+0.1
3,935,122	+				+0.3
3,935,122	+				-1.1
3,935,124	+				-0.5
3,935,124	+				-1.5
3,935,128	+				+1.1
3,935,133	+				+0.1
3,935,141	-				-0.9
3,935,150	-				+0.4
3,935,159	+				-1.2
3,935,159	+				+1.1
3,935,159	+				+0.4
3,935,159	+				-0.3
3,935,159	+				-1.8
3,935,167	-				-0.2
3,935,167	-				+1.2
3,935,167	-				-1.3
3,935,167	-				-0.1
3,935,167	-				+0.8
3,935,167	-				-0.2
3,935,167	-				-0.5
3,935,167	-				+0.0
3,935,167	-				+0.2
3,935,184	+				+0.7
3,935,192	-				-1.0
3,935,192	-				+0.6
3,935,201	+				+0.3
3,935,209	-				-0.1
3,935,215	-		GFF3898	0.10	+1.5
3,935,256	-		GFF3898	0.14	-0.1
3,935,259	-		GFF3898	0.14	-0.3
3,935,259	-		GFF3898	0.14	-1.4
3,935,263	+		GFF3898	0.14	-0.1
3,935,263	+		GFF3898	0.14	+0.9
3,935,268	+		GFF3898	0.15	-1.1
3,935,271	-		GFF3898	0.15	-0.3
3,935,271	-		GFF3898	0.15	-0.2
3,935,278	+		GFF3898	0.16	-0.1
3,935,284	-		GFF3898	0.16	-0.8
3,935,286	-		GFF3898	0.17	-0.0
3,935,286	-		GFF3898	0.17	-0.3
3,935,326	-		GFF3898	0.20	-1.9
3,935,351	+		GFF3898	0.22	+1.0
3,935,351	+		GFF3898	0.22	-1.9
3,935,354	-		GFF3898	0.23	-1.3
3,935,359	-		GFF3898	0.23	-0.0
3,935,359	-		GFF3898	0.23	+0.1
3,935,360	+		GFF3898	0.23	+0.6
3,935,368	-		GFF3898	0.24	-0.1
3,935,368	-		GFF3898	0.24	+0.4
3,935,368	-		GFF3898	0.24	-0.0
3,935,368	-		GFF3898	0.24	+1.6
3,935,371	+		GFF3898	0.24	-0.0
3,935,371	+		GFF3898	0.24	-0.1
3,935,381	-		GFF3898	0.25	+0.5
3,935,401	-		GFF3898	0.27	-1.0
3,935,428	+		GFF3898	0.30	+0.7
3,935,428	+		GFF3898	0.30	-0.6
3,935,436	-		GFF3898	0.30	+1.5
3,935,447	+		GFF3898	0.31	-2.0
3,935,463	+		GFF3898	0.33	-0.5
3,935,468	+		GFF3898	0.33	-1.4
3,935,469	-		GFF3898	0.33	-1.4
3,935,469	-		GFF3898	0.33	+0.0
3,935,471	-		GFF3898	0.34	-1.2
3,935,471	-		GFF3898	0.34	-2.2
3,935,471	-		GFF3898	0.34	+0.8
3,935,476	-		GFF3898	0.34	+0.6
3,935,477	+		GFF3898	0.34	-0.8
3,935,482	+		GFF3898	0.35	+1.9
3,935,482	+		GFF3898	0.35	-0.6
3,935,485	-		GFF3898	0.35	+0.5
3,935,485	-		GFF3898	0.35	+0.3
3,935,485	-		GFF3898	0.35	-0.1
3,935,485	-		GFF3898	0.35	-0.4
3,935,500	+		GFF3898	0.36	-1.1
3,935,500	+		GFF3898	0.36	-1.8
3,935,500	-		GFF3898	0.36	-1.6
3,935,520	+		GFF3898	0.38	-1.7
3,935,537	+		GFF3898	0.40	-0.5
3,935,537	+		GFF3898	0.40	-2.6
3,935,537	+		GFF3898	0.40	+0.7
3,935,537	+		GFF3898	0.40	+0.0
3,935,545	-		GFF3898	0.40	-1.0
3,935,571	+		GFF3898	0.43	+1.3
3,935,574	-		GFF3898	0.43	-2.4
3,935,586	+		GFF3898	0.44	+1.9
3,935,586	+		GFF3898	0.44	-0.1
3,935,586	+		GFF3898	0.44	-2.0
3,935,595	-		GFF3898	0.45	+0.5
3,935,595	-		GFF3898	0.45	+0.5
3,935,602	-		GFF3898	0.46	-1.8
3,935,604	+		GFF3898	0.46	+1.0
3,935,629	+		GFF3898	0.48	+0.3
3,935,629	+		GFF3898	0.48	-1.0
3,935,629	+		GFF3898	0.48	-2.6
3,935,629	+		GFF3898	0.48	-0.1
3,935,630	+		GFF3898	0.48	-0.1
3,935,632	-		GFF3898	0.48	-0.2
3,935,634	+		GFF3898	0.48	-0.9
3,935,637	-		GFF3898	0.49	-1.3
3,935,637	-		GFF3898	0.49	-0.9
3,935,637	-		GFF3898	0.49	-0.8
3,935,642	-		GFF3898	0.49	-0.3
3,935,642	-		GFF3898	0.49	-0.2
3,935,642	-		GFF3898	0.49	-0.2
3,935,652	+		GFF3898	0.50	-0.3
3,935,652	+		GFF3898	0.50	-1.4
3,935,660	-		GFF3898	0.51	+0.3
3,935,660	-		GFF3898	0.51	+0.8
3,935,684	+		GFF3898	0.53	+0.5
3,935,689	+		GFF3898	0.54	-0.4
3,935,689	+		GFF3898	0.54	-0.1
3,935,689	+		GFF3898	0.54	-1.2
3,935,689	+		GFF3898	0.54	-0.2
3,935,697	-		GFF3898	0.54	-0.2
3,935,743	-		GFF3898	0.58	+0.3
3,935,748	-		GFF3898	0.59	-1.1
3,935,763	-		GFF3898	0.60	-0.2
3,935,788	+		GFF3898	0.63	+0.0
3,935,801	-		GFF3898	0.64	+0.7
3,935,801	-		GFF3898	0.64	-1.0
3,935,806	-		GFF3898	0.64	+0.2
3,935,814	-		GFF3898	0.65	-0.5
3,935,819	-		GFF3898	0.65	+0.3
3,935,823	+		GFF3898	0.66	+1.0
3,935,824	-		GFF3898	0.66	+1.1
3,935,853	-		GFF3898	0.69	+0.2
3,935,856	+		GFF3898	0.69	-0.7
3,935,864	-		GFF3898	0.70	+0.7
3,935,896	-		GFF3898	0.73	+1.0
3,935,896	-		GFF3898	0.73	+0.6
3,935,901	-		GFF3898	0.73	+0.0
3,935,901	-		GFF3898	0.73	-0.1
3,935,905	+		GFF3898	0.73	-0.3
3,935,905	+		GFF3898	0.73	+0.5
3,935,913	-		GFF3898	0.74	+0.3
3,935,913	-		GFF3898	0.74	-0.3
3,935,913	-		GFF3898	0.74	+0.9
3,935,940	-		GFF3898	0.77	+0.3
3,935,956	+		GFF3898	0.78	+0.4
3,935,956	+		GFF3898	0.78	-0.5
3,935,964	-		GFF3898	0.79	-0.7
3,935,964	-		GFF3898	0.79	-1.8
3,935,964	-		GFF3898	0.79	+0.9
3,935,971	+		GFF3898	0.79	+0.5
3,935,986	+		GFF3898	0.81	+1.1
3,936,005	-		GFF3898	0.83	-0.5
3,936,019	+		GFF3898	0.84	-2.5
3,936,019	+		GFF3898	0.84	-1.0
3,936,065	+		GFF3898	0.88	-1.5
3,936,073	-		GFF3898	0.89	+1.2
3,936,075	-		GFF3898	0.89	+0.6
3,936,107	-				+1.5
3,936,118	-				-2.0
3,936,123	-				+0.5
3,936,145	+				-0.1
3,936,145	+				+0.6
3,936,153	-				-0.5
3,936,153	-				+1.0
3,936,153	-				+1.1
3,936,158	+				-0.6
3,936,158	+				+1.3
3,936,158	+				-0.3
3,936,166	-				+0.4
3,936,166	-				-0.3
3,936,166	-				-0.9
3,936,175	+				+1.3
3,936,176	-				+0.1
3,936,176	-				-0.8
3,936,176	-				-0.2
3,936,205	+				+0.1
3,936,205	+				+0.0
3,936,205	+				-0.9
3,936,213	-				+0.9
3,936,213	-				-0.4
3,936,213	-				-1.0
3,936,213	-				-0.3
3,936,265	+				-0.1
3,936,273	-				+0.6
3,936,283	-				-1.6