Strain Fitness in Sphingobium sp. HT1-2 around GFF3838

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
3,875,687	-				+0.7
3,875,687	-				+0.2
3,875,709	-				-0.1
3,875,745	+				+0.4
3,875,745	+				-2.0
3,875,745	+				-0.0
3,875,745	+				-0.4
3,875,745	+				+1.0
3,875,745	+				-0.1
3,875,745	+				-0.6
3,875,745	+				-2.2
3,875,745	+				+0.7
3,875,745	+				-1.0
3,875,750	+				-0.2
3,875,753	-				-0.1
3,875,753	-				-1.0
3,875,753	-				-1.7
3,875,753	-				-0.5
3,875,753	-				-2.0
3,875,753	-				+0.3
3,875,763	-				+1.4
3,875,763	-				+0.5
3,875,763	-				-0.5
3,875,763	-				-2.2
3,875,780	+				-1.9
3,875,780	+				-1.4
3,875,780	+				-0.5
3,875,780	+				+0.7
3,875,780	+				-0.2
3,875,780	+				-1.1
3,875,780	+				-2.5
3,875,780	+				+0.3
3,875,780	+				-2.6
3,875,780	+				-2.5
3,875,780	+				-0.1
3,875,780	+				+0.4
3,875,780	+				-0.1
3,875,780	+				-0.0
3,875,780	+				-1.7
3,875,780	+				-0.5
3,875,780	+				-0.2
3,875,780	+				-0.5
3,875,780	+				-1.8
3,875,780	+				-0.2
3,875,780	+				+0.3
3,875,780	+				+0.5
3,875,780	+				-0.3
3,875,787	+				+0.5
3,875,787	+				-1.5
3,875,788	-				-2.9
3,875,788	-				+0.3
3,875,788	-				-1.4
3,875,788	-				-0.9
3,875,788	-				+0.2
3,875,788	-				+0.1
3,875,788	-				-1.2
3,875,788	-				-1.4
3,875,788	-				-0.9
3,875,788	-				-0.2
3,875,788	-				-0.8
3,875,788	-				-0.6
3,875,788	-				-1.3
3,875,788	-				-1.5
3,875,796	-				-1.8
3,875,848	+		GFF3837	0.12	+0.6
3,875,854	-		GFF3837	0.13	-1.4
3,875,864	+		GFF3837	0.14	-2.0
3,875,864	+		GFF3837	0.14	-0.9
3,875,866	-		GFF3837	0.14	-1.6
3,875,866	-		GFF3837	0.14	+0.7
3,875,876	-		GFF3837	0.15	-2.1
3,875,876	-		GFF3837	0.15	-0.7
3,875,878	-		GFF3837	0.15	-0.8
3,875,879	+		GFF3837	0.16	-1.2
3,875,884	+		GFF3837	0.16	-0.4
3,875,887	+		GFF3837	0.16	+0.8
3,875,887	-		GFF3837	0.16	-0.2
3,875,889	+		GFF3837	0.17	+2.2
3,875,892	-		GFF3837	0.17	-1.9
3,875,894	+		GFF3837	0.17	+0.5
3,875,894	+		GFF3837	0.17	+0.0
3,875,894	+		GFF3837	0.17	-1.1
3,875,895	-		GFF3837	0.17	+0.2
3,875,897	-		GFF3837	0.17	-0.5
3,875,899	+		GFF3837	0.18	-0.3
3,875,902	-		GFF3837	0.18	+0.4
3,875,902	-		GFF3837	0.18	+0.2
3,875,904	+		GFF3837	0.18	-0.0
3,875,907	-		GFF3837	0.18	+0.5
3,875,907	-		GFF3837	0.18	+0.2
3,875,910	+		GFF3837	0.19	-0.6
3,875,912	-		GFF3837	0.19	+0.4
3,875,912	-		GFF3837	0.19	-0.3
3,875,912	-		GFF3837	0.19	+0.9
3,875,919	+		GFF3837	0.20	+0.6
3,875,919	+		GFF3837	0.20	-0.8
3,875,935	+		GFF3837	0.21	-1.8
3,875,935	+		GFF3837	0.21	-0.5
3,875,935	+		GFF3837	0.21	-0.3
3,875,940	+		GFF3837	0.22	+0.4
3,875,943	-		GFF3837	0.22	+0.2
3,875,943	-		GFF3837	0.22	-0.1
3,875,973	+		GFF3837	0.25	+0.0
3,875,981	-		GFF3837	0.26	+0.4
3,875,981	-		GFF3837	0.26	+0.3
3,876,018	+		GFF3837	0.30	-0.6
3,876,018	+		GFF3837	0.30	-0.1
3,876,018	+		GFF3837	0.30	+0.5
3,876,026	-		GFF3837	0.31	+0.1
3,876,085	-		GFF3837	0.37	+0.1
3,876,102	+		GFF3837	0.39	-0.5
3,876,137	+		GFF3837	0.43	-0.8
3,876,145	-		GFF3837	0.43	-0.4
3,876,145	-		GFF3837	0.43	-0.1
3,876,145	-		GFF3837	0.43	-0.1
3,876,145	-		GFF3837	0.43	-0.6
3,876,145	-		GFF3837	0.43	+0.6
3,876,182	+		GFF3837	0.47	-0.8
3,876,190	-		GFF3837	0.48	+0.1
3,876,201	+		GFF3837	0.49	-1.6
3,876,230	-		GFF3837	0.52	-0.0
3,876,236	-		GFF3837	0.53	-0.8
3,876,253	-		GFF3837	0.55	+0.5
3,876,253	-		GFF3837	0.55	+0.1
3,876,255	+		GFF3837	0.55	-0.2
3,876,284	+		GFF3837	0.58	-0.2
3,876,297	-		GFF3837	0.59	-0.5
3,876,311	+		GFF3837	0.61	-0.9
3,876,311	+		GFF3837	0.61	+0.0
3,876,311	+		GFF3837	0.61	-1.3
3,876,311	+		GFF3837	0.61	-0.6
3,876,311	+		GFF3837	0.61	+0.8
3,876,319	-		GFF3837	0.62	-0.3
3,876,319	-		GFF3837	0.62	+0.4
3,876,319	-		GFF3837	0.62	+0.1
3,876,355	+		GFF3837	0.65	-0.6
3,876,371	+		GFF3837	0.67	-1.4
3,876,371	+		GFF3837	0.67	-2.2
3,876,386	+		GFF3837	0.69	-2.0
3,876,386	+		GFF3837	0.69	+0.2
3,876,386	+		GFF3837	0.69	+0.7
3,876,394	-		GFF3837	0.69	-0.2
3,876,394	-		GFF3837	0.69	-1.4
3,876,394	-		GFF3837	0.69	+0.4
3,876,394	-		GFF3837	0.69	+1.0
3,876,394	-		GFF3837	0.69	-1.7
3,876,394	-		GFF3837	0.69	-1.6
3,876,394	-		GFF3837	0.69	-0.4
3,876,421	+		GFF3837	0.72	+0.3
3,876,421	+		GFF3837	0.72	-0.5
3,876,439	+		GFF3837	0.74	-1.9
3,876,462	+		GFF3837	0.77	-0.1
3,876,467	+		GFF3837	0.77	-1.3
3,876,470	+		GFF3837	0.77	-2.4
3,876,480	-		GFF3837	0.79	-1.1
3,876,480	-		GFF3837	0.79	-2.0
3,876,492	+		GFF3837	0.80	-0.8
3,876,500	-		GFF3837	0.81	-1.5
3,876,509	+		GFF3837	0.82	-0.2
3,876,548	-		GFF3837	0.86	-0.6
3,876,562	-		GFF3837	0.87	-2.4
3,876,566	+		GFF3837	0.88	-1.5
3,876,566	+		GFF3837	0.88	-0.1
3,876,575	-		GFF3837	0.88	+0.3
3,876,581	+		GFF3837	0.89	-0.2
3,876,610	-				+0.7
3,876,615	+				-0.5
3,876,620	+				-0.4
3,876,620	+				-1.8
3,876,623	-				-0.0
3,876,628	-				-0.3
3,876,646	+				+0.5
3,876,660	+				-2.0
3,876,676	+				+0.7
3,876,695	+				-1.1
3,876,730	+				+1.6
3,876,730	+				-1.2
3,876,730	+				-1.4
3,876,730	+				+0.3
3,876,736	+				+0.6
3,876,738	-				-0.9
3,876,738	-				-0.3
3,876,741	+				-0.1
3,876,744	-				-0.2
3,876,749	-				-1.0
3,876,775	+		GFF3838	0.11	+0.4
3,876,775	+		GFF3838	0.11	-1.1
3,876,796	+		GFF3838	0.14	+0.2
3,876,800	+		GFF3838	0.14	-0.3
3,876,807	+		GFF3838	0.15	-1.4
3,876,809	+		GFF3838	0.16	-1.0
3,876,809	+		GFF3838	0.16	+0.6
3,876,815	+		GFF3838	0.16	-0.3
3,876,817	-		GFF3838	0.16	-0.1
3,876,823	-		GFF3838	0.17	+0.4
3,876,827	-		GFF3838	0.18	-0.2
3,876,828	+		GFF3838	0.18	-0.6
3,876,830	+		GFF3838	0.18	+0.6
3,876,844	+		GFF3838	0.20	-0.6
3,876,850	+		GFF3838	0.20	-0.1
3,876,852	-		GFF3838	0.21	+0.8
3,876,858	-		GFF3838	0.21	-1.1
3,876,858	-		GFF3838	0.21	-1.7
3,876,858	-		GFF3838	0.21	+0.6
3,876,872	-		GFF3838	0.23	+0.5
3,876,880	+		GFF3838	0.24	+1.2
3,876,886	+		GFF3838	0.25	-0.9
3,876,913	+		GFF3838	0.28	+0.9
3,876,915	-		GFF3838	0.28	-1.3
3,876,939	+		GFF3838	0.31	-1.8
3,876,947	-		GFF3838	0.32	-1.8
3,876,959	-		GFF3838	0.34	-2.4
3,876,971	+		GFF3838	0.35	+0.6
3,876,976	-		GFF3838	0.36	-2.8
3,876,976	-		GFF3838	0.36	-0.4
3,876,990	+		GFF3838	0.37	+1.1
3,876,990	+		GFF3838	0.37	-1.7
3,876,996	+		GFF3838	0.38	+0.6
3,877,005	-		GFF3838	0.39	-0.8
3,877,014	+		GFF3838	0.40	-0.7
3,877,030	-		GFF3838	0.42	-2.5
3,877,044	-		GFF3838	0.44	-2.2
3,877,045	-		GFF3838	0.44	-0.5
3,877,053	+		GFF3838	0.45	+0.6
3,877,053	+		GFF3838	0.45	+1.4
3,877,076	-		GFF3838	0.48	-0.3
3,877,094	-		GFF3838	0.50	-0.1
3,877,096	+		GFF3838	0.50	+0.2
3,877,096	+		GFF3838	0.50	-0.3
3,877,104	-		GFF3838	0.51	-0.1
3,877,106	+		GFF3838	0.52	-2.5
3,877,106	+		GFF3838	0.52	-0.4
3,877,106	+		GFF3838	0.52	-0.8
3,877,114	-		GFF3838	0.52	+0.4
3,877,114	-		GFF3838	0.52	-0.4
3,877,114	-		GFF3838	0.52	+0.2
3,877,122	+		GFF3838	0.53	-0.4
3,877,122	+		GFF3838	0.53	+0.8
3,877,130	-		GFF3838	0.54	-1.6
3,877,139	+		GFF3838	0.56	-0.5
3,877,144	+		GFF3838	0.56	+0.1
3,877,144	+		GFF3838	0.56	-1.6
3,877,144	+		GFF3838	0.56	+0.3
3,877,145	-		GFF3838	0.56	-0.3
3,877,152	-		GFF3838	0.57	-1.4
3,877,154	+		GFF3838	0.57	-0.4
3,877,159	+		GFF3838	0.58	+1.6
3,877,162	-		GFF3838	0.58	+0.0
3,877,162	-		GFF3838	0.58	-1.7
3,877,192	-		GFF3838	0.62	-0.5
3,877,237	+		GFF3838	0.67	+0.3
3,877,247	+		GFF3838	0.69	+0.1
3,877,255	-		GFF3838	0.70	-1.9
3,877,343	+		GFF3838	0.80	+0.1
3,877,351	-		GFF3838	0.81	+1.0
3,877,351	-		GFF3838	0.81	-0.4
3,877,353	+		GFF3838	0.81	+1.4
3,877,369	+		GFF3838	0.83	-0.5
3,877,369	+		GFF3838	0.83	-0.1
3,877,374	+		GFF3838	0.84	-0.8
3,877,374	+		GFF3838	0.84	+1.0
3,877,379	+		GFF3838	0.85	+1.2
3,877,382	-		GFF3838	0.85	-0.6
3,877,382	-		GFF3838	0.85	-0.8
3,877,382	-		GFF3838	0.85	-1.2
3,877,390	+		GFF3838	0.86	+0.0
3,877,394	+		GFF3838	0.86	-0.0
3,877,398	-		GFF3838	0.87	-0.4
3,877,399	+		GFF3838	0.87	-1.5
3,877,402	-		GFF3838	0.87	-1.7
3,877,412	-		GFF3838	0.89	-0.8
3,877,412	-		GFF3838	0.89	+0.5
3,877,462	+				-1.3
3,877,463	+				+0.3
3,877,467	+				-1.7
3,877,467	+				-1.6
3,877,467	+				+1.2
3,877,467	+				-0.2
3,877,467	+				-0.3
3,877,473	+				+0.7
3,877,473	+				+0.2
3,877,475	-				+0.3
3,877,475	-				-0.5
3,877,475	-				-0.2
3,877,475	-				-1.3
3,877,475	-				-0.8
3,877,475	-				-1.0
3,877,481	-				+0.5
3,877,481	-				-1.0
3,877,489	+				-0.3
3,877,489	-				+0.2
3,877,489	-				-0.7
3,877,497	-				+0.4
3,877,499	+				-2.1
3,877,499	+				-0.3
3,877,507	-				-1.1
3,877,520	+				+0.4
3,877,520	+				-0.7
3,877,559	-				-1.1
3,877,559	-				-0.4
3,877,559	-				-1.3
3,877,559	-				-1.7
3,877,573	+				+0.0
3,877,573	+				+0.6
3,877,573	+				-0.8
3,877,573	+				+0.3
3,877,573	+				-1.1
3,877,573	+				+0.5
3,877,581	+				-1.5
3,877,581	-				+0.5
3,877,590	-				-0.2
3,877,590	-				+0.2
3,877,600	+				-1.4
3,877,617	+				-1.5
3,877,638	-				-1.4
3,877,643	-				-0.6
3,877,654	+		GFF3839	0.12	-0.4
3,877,659	+		GFF3839	0.13	-0.6
3,877,664	+		GFF3839	0.14	+0.2
3,877,664	+		GFF3839	0.14	+0.3
3,877,669	+		GFF3839	0.14	-0.1
3,877,671	+		GFF3839	0.15	-0.2
3,877,672	-		GFF3839	0.15	+0.1
3,877,676	+		GFF3839	0.16	+0.0
3,877,676	+		GFF3839	0.16	-1.1
3,877,677	-		GFF3839	0.16	-0.3
3,877,679	-		GFF3839	0.16	-2.4
3,877,684	-		GFF3839	0.17	+0.7
3,877,692	+		GFF3839	0.19	+0.5
3,877,697	-		GFF3839	0.20	-0.0
3,877,702	+		GFF3839	0.21	-2.0
3,877,702	+		GFF3839	0.21	+0.2
3,877,705	-		GFF3839	0.21	-0.4
3,877,733	-		GFF3839	0.26	+1.5
3,877,769	-		GFF3839	0.33	-2.5
3,877,770	+		GFF3839	0.33	-1.1
3,877,785	-		GFF3839	0.36	-1.5
3,877,785	-		GFF3839	0.36	+1.1
3,877,811	-		GFF3839	0.40	-0.2
3,877,854	+		GFF3839	0.48	-1.8
3,877,859	+		GFF3839	0.49	-0.6
3,877,862	-		GFF3839	0.50	-0.0
3,877,898	+		GFF3839	0.56	-1.4
3,877,939	+		GFF3839	0.64	+0.6
3,877,939	+		GFF3839	0.64	-2.9
3,877,939	+		GFF3839	0.64	+0.2
3,877,939	+		GFF3839	0.64	+0.2
3,877,939	+		GFF3839	0.64	-0.3
3,877,947	-		GFF3839	0.65	+0.8
3,877,962	-		GFF3839	0.68	+0.3
3,877,976	+		GFF3839	0.71	+1.2
3,877,985	+		GFF3839	0.72	-0.4
3,878,019	-		GFF3839	0.79	-1.9
3,878,019	-		GFF3839	0.79	-0.2
3,878,043	-		GFF3839	0.83	+0.5
3,878,070	-		GFF3839	0.88	+1.0
3,878,075	+		GFF3839	0.89	-2.0
3,878,099	-				-1.4
3,878,099	-				+1.5
3,878,105	+				+1.2
3,878,105	+				-0.1
3,878,113	-				-0.9
3,878,114	+				-0.3
3,878,114	+				-0.3
3,878,122	-				-0.4
3,878,122	-				+1.4
3,878,122	-				+0.4
3,878,122	-				-1.6
3,878,122	-				+0.2
3,878,122	-				+0.3
3,878,122	-				+0.8
3,878,122	-				-1.2
3,878,136	+				-0.5
3,878,136	+				+0.6
3,878,136	+				-1.9
3,878,143	-				-2.4
3,878,144	-				+0.8
3,878,144	-				+0.1
3,878,144	-				-1.9
3,878,144	-				-0.3
3,878,144	-				-1.0
3,878,144	-				-0.6
3,878,144	-				-0.0
3,878,188	+				+0.6
3,878,193	+				-1.8
3,878,193	+				-0.5
3,878,196	-				-1.0
3,878,200	-				-1.8
3,878,201	-				-1.6
3,878,218	+				-1.3
3,878,218	+				+0.4
3,878,262	+				-0.3
3,878,262	+				-0.3
3,878,263	+				-0.4
3,878,263	+				+1.0
3,878,263	+				-0.2
3,878,263	+				+0.7
3,878,263	+				-0.1
3,878,263	+				-1.0
3,878,263	+				+0.3
3,878,263	+				-1.4
3,878,268	+				-0.7
3,878,270	-		GFF3840	0.10	-0.9
3,878,271	-		GFF3840	0.11	-0.1
3,878,271	-		GFF3840	0.11	-0.1
3,878,271	-		GFF3840	0.11	+1.1
3,878,271	-		GFF3840	0.11	-0.8
3,878,271	-		GFF3840	0.11	-2.4
3,878,271	-		GFF3840	0.11	-0.9
3,878,271	-		GFF3840	0.11	-1.8
3,878,271	-		GFF3840	0.11	-0.7
3,878,271	-		GFF3840	0.11	+0.6
3,878,271	-		GFF3840	0.11	-2.0
3,878,271	-		GFF3840	0.11	+0.2
3,878,271	-		GFF3840	0.11	+0.2
3,878,271	-		GFF3840	0.11	-1.5
3,878,273	+		GFF3840	0.11	+0.2
3,878,273	+		GFF3840	0.11	-0.3
3,878,276	-		GFF3840	0.12	+0.6
3,878,281	-		GFF3840	0.13	-0.9
3,878,281	-		GFF3840	0.13	-0.5
3,878,281	-		GFF3840	0.13	-0.6
3,878,281	-		GFF3840	0.13	-0.5
3,878,295	+		GFF3840	0.16	-1.9
3,878,295	+		GFF3840	0.16	+1.1
3,878,295	+		GFF3840	0.16	+0.5
3,878,295	+		GFF3840	0.16	-1.1
3,878,295	+		GFF3840	0.16	+1.1
3,878,303	-		GFF3840	0.18	+0.7
3,878,303	-		GFF3840	0.18	+0.7
3,878,303	-		GFF3840	0.18	-0.6
3,878,303	-		GFF3840	0.18	+0.3
3,878,303	-		GFF3840	0.18	-2.2
3,878,303	-		GFF3840	0.18	+1.1
3,878,303	-		GFF3840	0.18	+0.1
3,878,316	+		GFF3840	0.21	-2.5
3,878,324	-		GFF3840	0.23	+1.3
3,878,353	+		GFF3840	0.29	+0.1
3,878,371	-		GFF3840	0.33	+0.0
3,878,371	-		GFF3840	0.33	-1.5
3,878,409	+		GFF3840	0.42	-0.5
3,878,444	-		GFF3840	0.50	+0.5
3,878,455	-		GFF3840	0.52	-1.6
3,878,480	-		GFF3840	0.58	-0.4
3,878,480	-		GFF3840	0.58	+1.4
3,878,496	+		GFF3840	0.61	+0.3
3,878,501	+		GFF3840	0.62	+0.0