Strain Fitness in Sphingobium sp. HT1-2 around GFF3765

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
3,800,904	-				-0.7
3,800,904	-				-0.1
3,800,904	-				-1.1
3,800,904	-				+0.4
3,800,921	-				-0.5
3,800,932	+				+0.6
3,800,932	+				-0.4
3,800,937	+				+0.6
3,800,940	-				+1.3
3,800,940	-				-0.4
3,800,940	-				-0.7
3,800,940	-				-0.7
3,800,940	-				-0.1
3,800,945	-				+0.2
3,800,950	-				+1.1
3,801,046	-		GFF3763	0.11	+0.4
3,801,062	+		GFF3763	0.13	-0.0
3,801,070	-		GFF3763	0.14	+0.2
3,801,122	+		GFF3763	0.23	-0.1
3,801,246	+		GFF3763	0.43	+2.5
3,801,360	+		GFF3763	0.62	-1.3
3,801,360	+		GFF3763	0.62	-0.1
3,801,399	+		GFF3763	0.68	+0.4
3,801,420	+		GFF3763	0.71	+0.9
3,801,420	+		GFF3763	0.71	-0.2
3,801,420	+		GFF3763	0.71	-0.3
3,801,420	+		GFF3763	0.71	-0.7
3,801,420	+		GFF3763	0.71	-0.2
3,801,420	+		GFF3763	0.71	-1.0
3,801,426	-		GFF3763	0.72	-1.3
3,801,428	-		GFF3763	0.73	-0.6
3,801,428	-		GFF3763	0.73	+0.1
3,801,428	-		GFF3763	0.73	-0.4
3,801,428	-		GFF3763	0.73	-0.7
3,801,453	+		GFF3763	0.77	+1.2
3,801,453	+		GFF3763	0.77	-0.0
3,801,453	+		GFF3763	0.77	+0.1
3,801,458	+		GFF3763	0.78	+1.4
3,801,461	-		GFF3763	0.78	+0.9
3,801,461	-		GFF3763	0.78	-0.7
3,801,461	-		GFF3763	0.78	+0.7
3,801,461	-		GFF3763	0.78	-1.0
3,801,461	-		GFF3763	0.78	-0.1
3,801,461	-		GFF3763	0.78	-1.7
3,801,463	+		GFF3763	0.78	+0.5
3,801,468	+		GFF3763	0.79	+0.4
3,801,476	-		GFF3763	0.80	-0.2
3,801,517	+		GFF3763	0.87	+0.4
3,801,517	+		GFF3763	0.87	+1.8
3,801,535	-				+0.0
3,801,577	+				+1.1
3,801,614	-				-0.5
3,801,614	-				-0.5
3,801,840	+				-0.4
3,801,840	+				-0.5
3,801,840	+				+0.7
3,801,853	-				+0.6
3,802,005	+				+0.4
3,802,013	-				-2.3
3,802,038	+				-0.7
3,802,058	-		GFF3765	0.11	-0.1
3,802,071	+		GFF3765	0.12	-0.2
3,802,168	+		GFF3765	0.20	-2.0
3,802,176	-		GFF3765	0.20	-0.2
3,802,176	-		GFF3765	0.20	+0.2
3,802,180	+		GFF3765	0.20	-0.1
3,802,180	+		GFF3765	0.20	-0.4
3,802,180	+		GFF3765	0.20	-1.4
3,802,190	+		GFF3765	0.21	-1.1
3,802,198	-		GFF3765	0.22	-0.4
3,802,198	-		GFF3765	0.22	-2.1
3,802,224	+		GFF3765	0.24	+0.2
3,802,231	+		GFF3765	0.24	+0.3
3,802,234	+		GFF3765	0.24	-0.7
3,802,247	-		GFF3765	0.25	+1.3
3,802,256	+		GFF3765	0.26	-0.6
3,802,271	+		GFF3765	0.27	+1.4
3,802,331	+		GFF3765	0.32	-0.4
3,802,357	+		GFF3765	0.34	+1.0
3,802,365	-		GFF3765	0.34	-1.3
3,802,366	-		GFF3765	0.34	-1.5
3,802,389	-		GFF3765	0.36	+0.3
3,802,495	-		GFF3765	0.44	-0.4
3,802,554	+		GFF3765	0.48	-1.1
3,802,555	+		GFF3765	0.48	+0.1
3,802,556	+		GFF3765	0.48	-0.3
3,802,556	+		GFF3765	0.48	-0.1
3,802,596	-		GFF3765	0.51	+1.1
3,802,608	+		GFF3765	0.52	-0.9
3,802,608	+		GFF3765	0.52	+0.1
3,802,616	-		GFF3765	0.53	+0.8
3,802,656	+		GFF3765	0.56	-1.7
3,802,686	-		GFF3765	0.58	+1.0
3,802,742	-		GFF3765	0.62	+0.4
3,802,742	-		GFF3765	0.62	-0.4
3,802,742	-		GFF3765	0.62	-1.7
3,802,742	-		GFF3765	0.62	-0.4
3,802,756	+		GFF3765	0.63	+0.5
3,802,761	+		GFF3765	0.64	+0.6
3,802,764	-		GFF3765	0.64	+0.2
3,802,796	-		GFF3765	0.66	+0.9
3,802,811	-		GFF3765	0.67	-0.5
3,802,814	+		GFF3765	0.68	+1.0
3,802,814	+		GFF3765	0.68	+0.7
3,802,830	-		GFF3765	0.69	-0.2
3,802,900	+		GFF3765	0.74	+0.7
3,802,902	-		GFF3765	0.74	-0.7
3,802,916	+		GFF3765	0.75	-0.0
3,802,983	-		GFF3765	0.80	-1.4
3,802,983	-		GFF3765	0.80	-1.2
3,802,983	-		GFF3765	0.80	+0.2
3,802,990	+		GFF3765	0.81	+0.9
3,802,994	+		GFF3765	0.81	-0.4
3,802,998	-		GFF3765	0.81	-0.3
3,802,998	-		GFF3765	0.81	+0.2
3,803,000	+		GFF3765	0.81	+0.7
3,803,002	-		GFF3765	0.82	-0.7
3,803,002	-		GFF3765	0.82	-0.0
3,803,006	+		GFF3765	0.82	+0.7
3,803,055	+		GFF3765	0.85	-0.9
3,803,059	-		GFF3765	0.86	-0.1
3,803,081	-		GFF3765	0.87	-0.5
3,803,087	+		GFF3765	0.88	-2.7
3,803,141	-				-1.1
3,803,142	-				-0.7
3,803,216	+				+1.1
3,803,216	+				+0.2
3,803,216	+				+0.4
3,803,226	+				+0.9
3,803,250	+				-0.4
3,803,255	+				+1.4
3,803,279	+				-1.2
3,803,308	+		GFF3766	0.17	-0.1
3,803,308	+		GFF3766	0.17	-0.3
3,803,316	+		GFF3766	0.19	+0.8
3,803,316	+		GFF3766	0.19	-0.2
3,803,316	+		GFF3766	0.19	-1.2
3,803,316	-		GFF3766	0.19	-0.1
3,803,316	-		GFF3766	0.19	+0.6
3,803,324	-		GFF3766	0.21	+0.1
3,803,324	-		GFF3766	0.21	+0.0
3,803,336	-		GFF3766	0.25	-0.4
3,803,336	-		GFF3766	0.25	-0.3
3,803,363	-		GFF3766	0.32	-0.0
3,803,363	-		GFF3766	0.32	+0.7
3,803,384	+		GFF3766	0.37	+0.1
3,803,399	+		GFF3766	0.41	+1.0
3,803,399	+		GFF3766	0.41	-1.2
3,803,399	+		GFF3766	0.41	+0.1
3,803,399	+		GFF3766	0.41	+0.5
3,803,399	+		GFF3766	0.41	+0.7
3,803,407	-		GFF3766	0.43	+0.5
3,803,407	-		GFF3766	0.43	+0.8
3,803,407	-		GFF3766	0.43	-0.4
3,803,413	+		GFF3766	0.45	-0.9
3,803,418	+		GFF3766	0.46	-0.3
3,803,423	+		GFF3766	0.48	-0.1
3,803,431	-		GFF3766	0.50	+0.5
3,803,431	-		GFF3766	0.50	+0.3
3,803,434	+		GFF3766	0.51	-0.9
3,803,477	-		GFF3766	0.62	-0.1
3,803,477	-		GFF3766	0.62	-2.2
3,803,479	+		GFF3766	0.62	-1.6
3,803,676	-				-0.1
3,803,805	+				-1.3
3,803,820	+				+0.6
3,803,828	-				+0.4
3,803,830	+				-0.6
3,803,830	+				+0.5
3,803,845	+				-1.4
3,803,872	+		GFF3767	0.12	+0.4
3,803,908	-		GFF3767	0.16	-0.8
3,803,913	-		GFF3767	0.17	+1.1
3,803,918	+		GFF3767	0.18	+0.9
3,803,926	-		GFF3767	0.18	-0.6
3,803,951	-		GFF3767	0.21	+0.1
3,803,952	+		GFF3767	0.21	-0.2
3,803,953	-		GFF3767	0.21	-0.9
3,803,964	-		GFF3767	0.23	-0.1
3,803,977	+		GFF3767	0.24	-0.7
3,803,977	+		GFF3767	0.24	-0.1
3,803,977	+		GFF3767	0.24	+1.0
3,803,977	+		GFF3767	0.24	+0.5
3,803,977	+		GFF3767	0.24	-0.1
3,803,977	+		GFF3767	0.24	+1.7
3,803,979	+		GFF3767	0.24	-1.1
3,803,985	-		GFF3767	0.25	+0.5
3,803,985	-		GFF3767	0.25	-1.1
3,803,985	-		GFF3767	0.25	+0.7
3,803,985	-		GFF3767	0.25	-0.6
3,803,985	-		GFF3767	0.25	+0.5
3,803,985	-		GFF3767	0.25	-0.7
3,803,985	-		GFF3767	0.25	+0.1
3,803,985	-		GFF3767	0.25	-0.3
3,803,985	-		GFF3767	0.25	+0.3
3,803,985	-		GFF3767	0.25	+0.8
3,803,985	-		GFF3767	0.25	+0.3
3,803,985	-		GFF3767	0.25	+1.4
3,803,987	-		GFF3767	0.25	-0.7
3,804,033	-		GFF3767	0.30	+1.4
3,804,086	+		GFF3767	0.36	-1.4
3,804,086	+		GFF3767	0.36	+0.5
3,804,094	-		GFF3767	0.37	+0.8
3,804,094	-		GFF3767	0.37	+0.1
3,804,094	-		GFF3767	0.37	-0.6
3,804,094	-		GFF3767	0.37	+1.6
3,804,094	-		GFF3767	0.37	-0.2
3,804,094	-		GFF3767	0.37	-0.5
3,804,094	-		GFF3767	0.37	+0.4
3,804,094	-		GFF3767	0.37	-0.6
3,804,094	-		GFF3767	0.37	+0.9
3,804,104	-		GFF3767	0.38	+1.4
3,804,104	-		GFF3767	0.38	-0.1
3,804,114	+		GFF3767	0.40	+1.4
3,804,120	+		GFF3767	0.40	+0.5
3,804,238	+		GFF3767	0.53	-0.2