Strain Fitness in Sphingobium sp. HT1-2 around GFF3757

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
3,794,839	-		GFF3755	0.80	+0.8
3,794,839	-		GFF3755	0.80	+0.3
3,794,849	+		GFF3755	0.81	+0.8
3,794,857	-		GFF3755	0.83	+1.7
3,794,862	-		GFF3755	0.83	-0.9
3,794,869	+		GFF3755	0.85	+0.8
3,794,869	+		GFF3755	0.85	+0.5
3,794,869	+		GFF3755	0.85	+0.4
3,794,879	+		GFF3755	0.86	-0.1
3,794,879	+		GFF3755	0.86	-1.8
3,794,879	+		GFF3755	0.86	+1.2
3,794,882	-		GFF3755	0.87	-0.3
3,794,884	+		GFF3755	0.87	+0.8
3,794,884	+		GFF3755	0.87	+0.7
3,794,884	+		GFF3755	0.87	-0.6
3,794,884	+		GFF3755	0.87	-0.6
3,794,884	+		GFF3755	0.87	-1.7
3,794,884	+		GFF3755	0.87	-0.3
3,794,884	+		GFF3755	0.87	+1.5
3,794,884	+		GFF3755	0.87	+0.3
3,794,884	+		GFF3755	0.87	-0.6
3,794,884	+		GFF3755	0.87	-0.5
3,794,884	+		GFF3755	0.87	-0.8
3,794,884	+		GFF3755	0.87	+0.5
3,794,884	+		GFF3755	0.87	-0.3
3,794,884	+		GFF3755	0.87	-2.2
3,794,884	+		GFF3755	0.87	-1.6
3,794,884	+		GFF3755	0.87	-0.2
3,794,884	+		GFF3755	0.87	-1.6
3,794,884	+		GFF3755	0.87	-0.1
3,794,884	+		GFF3755	0.87	+0.0
3,794,884	+		GFF3755	0.87	+0.4
3,794,884	+		GFF3755	0.87	+0.1
3,794,884	+		GFF3755	0.87	+0.6
3,794,884	+		GFF3755	0.87	-0.6
3,794,884	+		GFF3755	0.87	-1.1
3,794,884	+		GFF3755	0.87	-0.5
3,794,887	-		GFF3755	0.88	-0.1
3,794,887	-		GFF3755	0.88	-0.5
3,794,887	-		GFF3755	0.88	-0.3
3,794,892	-		GFF3755	0.89	-1.3
3,794,892	-		GFF3755	0.89	+0.1
3,794,892	-		GFF3755	0.89	-0.1
3,794,892	-		GFF3755	0.89	-0.1
3,794,892	-		GFF3755	0.89	-0.1
3,794,892	-		GFF3755	0.89	-0.8
3,794,892	-		GFF3755	0.89	-0.9
3,794,892	-		GFF3755	0.89	-2.9
3,794,892	-		GFF3755	0.89	-0.4
3,794,892	-		GFF3755	0.89	+0.2
3,794,892	-		GFF3755	0.89	-1.1
3,794,892	-		GFF3755	0.89	-1.5
3,794,892	-		GFF3755	0.89	-1.1
3,794,892	-		GFF3755	0.89	-0.3
3,794,892	-		GFF3755	0.89	-0.5
3,794,892	-		GFF3755	0.89	+0.9
3,794,892	-		GFF3755	0.89	+0.8
3,794,892	-		GFF3755	0.89	+1.0
3,794,892	-		GFF3755	0.89	-0.9
3,794,892	-		GFF3755	0.89	-0.2
3,794,892	-		GFF3755	0.89	-0.9
3,794,892	-		GFF3755	0.89	+0.3
3,794,892	-		GFF3755	0.89	-0.2
3,794,892	-		GFF3755	0.89	+0.9
3,794,892	-		GFF3755	0.89	-0.1
3,794,892	-		GFF3755	0.89	-0.0
3,794,892	-		GFF3755	0.89	-2.3
3,794,892	-		GFF3755	0.89	+0.8
3,794,892	-		GFF3755	0.89	-0.7
3,794,892	-		GFF3755	0.89	+0.1
3,794,892	-		GFF3755	0.89	+0.6
3,794,892	-		GFF3755	0.89	+1.4
3,794,921	-				-0.6
3,794,921	-				+0.2
3,794,939	+				+0.8
3,794,944	+				+0.1
3,794,944	+				-0.1
3,794,945	-				+0.4
3,794,949	+				-1.4
3,794,949	+				+1.1
3,794,957	-				-0.5
3,794,957	-				+0.7
3,794,957	-				-0.6
3,794,966	-				-0.9
3,794,966	-				-0.5
3,795,868	-				+0.2
3,795,868	-				-0.3
3,795,893	+		GFF3757	0.12	+0.3
3,795,913	+		GFF3757	0.17	-0.0
3,795,927	-		GFF3757	0.20	-0.9
3,795,941	+		GFF3757	0.23	-0.4
3,795,980	-		GFF3757	0.31	-0.6
3,795,999	-		GFF3757	0.35	+0.1
3,796,015	-		GFF3757	0.39	+1.2
3,796,030	-		GFF3757	0.42	-1.1
3,796,040	-		GFF3757	0.44	-0.3
3,796,048	-		GFF3757	0.46	+0.7
3,796,048	-		GFF3757	0.46	-1.6
3,796,048	-		GFF3757	0.46	-0.7
3,796,048	-		GFF3757	0.46	-0.5
3,796,065	-		GFF3757	0.50	-0.6
3,796,065	-		GFF3757	0.50	-1.6
3,796,130	-		GFF3757	0.64	+0.4
3,796,130	-		GFF3757	0.64	-0.0
3,796,152	-		GFF3757	0.69	-0.3
3,796,152	-		GFF3757	0.69	+0.8
3,796,247	-		GFF3757	0.89	+0.5
3,796,294	-				-0.9
3,796,298	-				-1.7
3,796,311	-				+0.0
3,796,311	-				+0.9
3,796,321	+				-2.1
3,796,331	+				-1.0
3,796,333	+				-1.6
3,796,333	+				-0.8
3,796,340	+				+0.2
3,796,340	+				-0.1
3,796,348	-				-0.7
3,796,356	+				-1.2
3,796,356	+				-2.5
3,796,357	+				-1.1
3,796,357	+				-0.5
3,796,357	+				+0.2
3,796,364	-				-1.3
3,796,373	+				-0.5
3,796,373	+				+0.4
3,796,373	+				-2.4
3,796,380	+				-0.8
3,796,380	+				-0.9
3,796,380	+				-0.4
3,796,380	+				+1.1
3,796,380	+				-0.3
3,796,380	+				-1.5
3,796,380	+				-0.5
3,796,388	-				-0.9
3,796,388	-				+0.0
3,796,388	-				-2.1
3,796,388	-				-2.0
3,796,388	-				+0.0
3,796,388	-				-0.5
3,796,388	-				+0.7
3,796,388	-				+0.3
3,796,406	+				-0.4
3,796,406	+				-0.2
3,796,416	-				-0.3
3,796,421	-				-0.5
3,796,421	-				-2.4
3,796,439	+				-2.7
3,796,447	-				+0.0
3,796,452	-				-0.4
3,796,468	+				-0.2
3,796,476	-				-0.1
3,796,476	-				-0.2
3,796,476	-				+0.3
3,796,477	+				-1.6
3,796,477	+				-0.0
3,796,477	+				-0.1
3,796,477	+				-0.3
3,796,477	+				-1.1
3,796,477	+				-0.2
3,796,477	+				+1.1
3,796,477	+				+1.0
3,796,477	+				+0.0
3,796,477	+				+1.0
3,796,477	+				-1.8
3,796,477	+				+0.1
3,796,477	+				+0.7
3,796,477	+				+0.1
3,796,477	+				-1.4
3,796,477	+				+0.9
3,796,477	+				+0.5
3,796,477	+				+1.4
3,796,477	+				-0.1
3,796,477	+				-1.4
3,796,477	+				-0.2
3,796,477	+				-0.2
3,796,478	+				-0.8
3,796,485	-				-1.4
3,796,485	-				+0.7
3,796,485	-				+1.2
3,796,485	-				-0.3
3,796,485	-				-2.6
3,796,485	-				-0.2
3,796,485	-				-1.9
3,796,485	-				-0.0
3,796,485	-				-1.7
3,796,485	-				-0.5
3,796,485	-				+0.8
3,796,485	-				-1.9
3,796,485	-				+0.3
3,796,485	-				-2.3
3,796,496	+				+1.0
3,796,510	+				+0.0
3,796,513	+				+1.7
3,796,518	+				-0.5
3,796,519	+				-0.3
3,796,519	+				+1.5
3,796,526	-				-1.0
3,796,534	+				-0.8
3,796,580	+		GFF3758	0.16	-0.4
3,796,588	-		GFF3758	0.17	-1.6
3,796,588	-		GFF3758	0.17	-0.4
3,796,593	-		GFF3758	0.18	+0.7
3,796,593	-		GFF3758	0.18	-0.3
3,796,609	-		GFF3758	0.21	-0.2
3,796,626	+		GFF3758	0.24	+1.1
3,796,626	+		GFF3758	0.24	+1.2
3,796,651	-		GFF3758	0.29	+0.0
3,796,688	+		GFF3758	0.35	+1.0
3,796,720	-		GFF3758	0.41	+0.9
3,796,729	-		GFF3758	0.42	-0.1
3,796,767	+		GFF3758	0.49	-0.7
3,796,783	-		GFF3758	0.52	+1.0
3,796,783	-		GFF3758	0.52	-0.2
3,796,783	-		GFF3758	0.52	-1.1
3,796,784	+		GFF3758	0.52	-0.3
3,796,784	+		GFF3758	0.52	-0.4
3,796,784	+		GFF3758	0.52	+0.2
3,796,792	-		GFF3758	0.53	-0.8
3,796,792	-		GFF3758	0.53	-0.5
3,796,802	-		GFF3758	0.55	-0.9
3,796,853	+		GFF3758	0.64	-0.5
3,796,861	+		GFF3758	0.66	-0.3
3,796,861	-		GFF3758	0.66	-1.6
3,796,865	+		GFF3758	0.66	+0.2
3,796,869	-		GFF3758	0.67	+0.4
3,796,870	+		GFF3758	0.67	-1.8
3,796,870	+		GFF3758	0.67	-0.6
3,796,870	+		GFF3758	0.67	-1.3
3,796,870	+		GFF3758	0.67	+0.5
3,796,870	+		GFF3758	0.67	+0.4
3,796,870	+		GFF3758	0.67	-2.1
3,796,870	+		GFF3758	0.67	-1.9
3,796,870	+		GFF3758	0.67	-1.6
3,796,870	+		GFF3758	0.67	-0.2
3,796,870	+		GFF3758	0.67	-0.1
3,796,870	+		GFF3758	0.67	+0.2
3,796,870	+		GFF3758	0.67	-1.3
3,796,870	+		GFF3758	0.67	-0.1
3,796,870	+		GFF3758	0.67	+0.2
3,796,870	+		GFF3758	0.67	-0.1
3,796,870	+		GFF3758	0.67	-0.3
3,796,870	+		GFF3758	0.67	-0.7
3,796,870	+		GFF3758	0.67	-0.0
3,796,870	+		GFF3758	0.67	-0.2
3,796,870	+		GFF3758	0.67	+0.4
3,796,870	+		GFF3758	0.67	-1.6
3,796,870	+		GFF3758	0.67	-1.3
3,796,870	+		GFF3758	0.67	-0.5
3,796,870	+		GFF3758	0.67	+0.2
3,796,870	+		GFF3758	0.67	-0.3
3,796,870	+		GFF3758	0.67	+0.7
3,796,870	+		GFF3758	0.67	-1.0
3,796,875	+		GFF3758	0.68	-0.9
3,796,875	+		GFF3758	0.68	+1.4
3,796,878	-		GFF3758	0.69	+1.0
3,796,878	-		GFF3758	0.69	-0.6
3,796,878	-		GFF3758	0.69	-1.9
3,796,878	-		GFF3758	0.69	-0.3
3,796,878	-		GFF3758	0.69	-1.9
3,796,878	-		GFF3758	0.69	+0.4
3,796,878	-		GFF3758	0.69	-0.4
3,796,878	-		GFF3758	0.69	-1.0
3,796,878	-		GFF3758	0.69	-0.4
3,796,878	-		GFF3758	0.69	-0.6
3,796,878	-		GFF3758	0.69	-3.1
3,796,878	-		GFF3758	0.69	-2.0
3,796,878	-		GFF3758	0.69	+0.5
3,796,878	-		GFF3758	0.69	-0.1
3,796,878	-		GFF3758	0.69	+1.1
3,796,878	-		GFF3758	0.69	-1.5
3,796,878	-		GFF3758	0.69	-1.5
3,796,878	-		GFF3758	0.69	-2.3
3,796,878	-		GFF3758	0.69	-1.6
3,796,878	-		GFF3758	0.69	-0.5
3,796,878	-		GFF3758	0.69	-0.3
3,796,878	-		GFF3758	0.69	-0.1
3,796,878	-		GFF3758	0.69	-0.5
3,796,878	-		GFF3758	0.69	-0.8
3,796,878	-		GFF3758	0.69	-0.6
3,796,878	-		GFF3758	0.69	+1.1
3,796,878	-		GFF3758	0.69	-0.5
3,796,878	-		GFF3758	0.69	-0.1
3,796,878	-		GFF3758	0.69	-0.3
3,796,948	+		GFF3758	0.81	-1.6
3,796,951	-		GFF3758	0.81	-2.0
3,796,985	+		GFF3758	0.87	-2.1
3,796,985	+		GFF3758	0.87	+0.1
3,796,993	-		GFF3758	0.89	+0.2
3,797,014	+				-0.3
3,797,016	+				+1.0
3,797,036	+				-0.3
3,797,049	+				+0.8
3,797,064	+				-2.0
3,797,064	+				-0.6
3,797,064	+				-0.1
3,797,072	-				+0.2
3,797,079	-				+0.1
3,797,080	+				-2.8
3,797,085	+				-0.1
3,797,087	+				-0.2
3,797,088	+				-0.7
3,797,093	-				+1.7
3,797,095	+				-0.3
3,797,095	-				-3.2
3,797,111	+				-0.8
3,797,167	+				-1.3
3,797,175	-				+0.1
3,797,176	+				-1.5
3,797,176	+				+0.5
3,797,176	+				-2.1
3,797,184	-				+0.2
3,797,184	-				-1.5
3,797,217	+		GFF3759	0.12	+1.1
3,797,217	+		GFF3759	0.12	-1.3
3,797,225	-		GFF3759	0.12	-2.2
3,797,261	+		GFF3759	0.15	-0.2
3,797,261	+		GFF3759	0.15	-1.1
3,797,269	-		GFF3759	0.16	-0.2
3,797,273	+		GFF3759	0.16	+0.8