Strain Fitness in Sphingobium sp. HT1-2 around GFF3703

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
3,747,829	+				+1.4
3,747,829	+				-0.1
3,747,837	-				+0.2
3,747,842	-				-1.5
3,747,875	-		GFF3702	0.10	-0.1
3,747,900	-		GFF3702	0.13	+0.9
3,747,924	-		GFF3702	0.15	+0.4
3,747,928	-		GFF3702	0.15	-2.2
3,747,952	+		GFF3702	0.18	+1.1
3,747,961	-		GFF3702	0.18	-0.6
3,747,968	+		GFF3702	0.19	+0.5
3,747,976	-		GFF3702	0.20	+1.0
3,748,005	+		GFF3702	0.23	+0.1
3,748,005	+		GFF3702	0.23	+0.0
3,748,005	+		GFF3702	0.23	+0.4
3,748,005	+		GFF3702	0.23	+1.8
3,748,005	+		GFF3702	0.23	-0.0
3,748,013	-		GFF3702	0.23	-0.0
3,748,013	-		GFF3702	0.23	+0.6
3,748,013	-		GFF3702	0.23	-2.2
3,748,013	-		GFF3702	0.23	+0.0
3,748,049	+		GFF3702	0.27	+0.1
3,748,049	+		GFF3702	0.27	+0.6
3,748,118	-		GFF3702	0.33	+1.3
3,748,136	+		GFF3702	0.35	+0.6
3,748,139	-		GFF3702	0.35	-0.3
3,748,147	+		GFF3702	0.36	-0.7
3,748,152	+		GFF3702	0.37	-0.3
3,748,155	-		GFF3702	0.37	-0.3
3,748,165	+		GFF3702	0.38	-0.5
3,748,165	+		GFF3702	0.38	+0.9
3,748,165	+		GFF3702	0.38	+0.5
3,748,165	+		GFF3702	0.38	+0.1
3,748,170	+		GFF3702	0.38	+0.3
3,748,200	+		GFF3702	0.41	-1.3
3,748,204	+		GFF3702	0.41	-0.5
3,748,218	-		GFF3702	0.43	+0.3
3,748,243	-		GFF3702	0.45	-0.2
3,748,264	-		GFF3702	0.47	-0.8
3,748,277	+		GFF3702	0.48	-0.0
3,748,292	+		GFF3702	0.50	-1.3
3,748,319	-		GFF3702	0.52	+0.0
3,748,326	-		GFF3702	0.53	-2.2
3,748,360	-		GFF3702	0.56	+1.4
3,748,374	-		GFF3702	0.58	+0.9
3,748,375	-		GFF3702	0.58	-1.0
3,748,433	+		GFF3702	0.63	+0.6
3,748,441	-		GFF3702	0.64	+0.1
3,748,453	+		GFF3702	0.65	+1.1
3,748,454	+		GFF3702	0.65	+1.5
3,748,485	+		GFF3702	0.68	+1.1
3,748,493	-		GFF3702	0.69	+0.4
3,748,610	-		GFF3702	0.80	-0.3
3,748,785	+				-0.9
3,748,785	+				-1.4
3,748,785	+				-0.2
3,748,793	-				+0.7
3,748,793	-				-1.2
3,748,793	-				-0.1
3,748,815	-				+1.0
3,748,879	+				-1.2
3,748,879	+				+1.1
3,748,879	+				+0.6
3,748,884	+				-0.6
3,748,887	-				+0.6
3,748,892	-				-0.6
3,748,906	-				+0.0
3,748,906	-				-1.6
3,748,924	+		GFF3703	0.11	+0.3
3,748,964	-		GFF3703	0.16	+0.5
3,748,970	+		GFF3703	0.17	+0.7
3,749,011	+		GFF3703	0.22	-0.3
3,749,012	+		GFF3703	0.22	+0.9
3,749,019	-		GFF3703	0.22	-0.5
3,749,019	-		GFF3703	0.22	-0.6
3,749,051	+		GFF3703	0.26	+0.8
3,749,051	+		GFF3703	0.26	+1.3
3,749,051	+		GFF3703	0.26	-0.2
3,749,054	-		GFF3703	0.27	-1.3
3,749,059	-		GFF3703	0.27	-0.2
3,749,059	-		GFF3703	0.27	+0.3
3,749,059	-		GFF3703	0.27	+2.0
3,749,059	-		GFF3703	0.27	+0.5
3,749,059	-		GFF3703	0.27	+1.1
3,749,061	+		GFF3703	0.27	-0.8
3,749,071	+		GFF3703	0.28	-0.0
3,749,074	-		GFF3703	0.29	+0.9
3,749,113	-		GFF3703	0.33	+0.2
3,749,117	-		GFF3703	0.34	-0.5
3,749,128	+		GFF3703	0.35	-1.9
3,749,128	+		GFF3703	0.35	-0.3
3,749,136	-		GFF3703	0.36	+0.1
3,749,155	+		GFF3703	0.38	+0.4
3,749,155	+		GFF3703	0.38	+1.3
3,749,163	-		GFF3703	0.39	-0.1
3,749,173	-		GFF3703	0.40	-0.5
3,749,184	-		GFF3703	0.42	+0.7
3,749,195	+		GFF3703	0.43	+0.9
3,749,197	+		GFF3703	0.43	+0.7
3,749,219	+		GFF3703	0.46	-2.0
3,749,219	+		GFF3703	0.46	+0.5
3,749,219	+		GFF3703	0.46	+0.7
3,749,219	+		GFF3703	0.46	+0.6
3,749,219	+		GFF3703	0.46	-0.4
3,749,219	+		GFF3703	0.46	-1.2
3,749,219	+		GFF3703	0.46	-3.1
3,749,219	+		GFF3703	0.46	+0.0
3,749,219	+		GFF3703	0.46	+0.3
3,749,219	+		GFF3703	0.46	+1.8
3,749,219	+		GFF3703	0.46	+0.1
3,749,219	+		GFF3703	0.46	-0.3
3,749,227	+		GFF3703	0.47	+1.4
3,749,227	-		GFF3703	0.47	-0.2
3,749,227	-		GFF3703	0.47	-0.1
3,749,267	-		GFF3703	0.51	+0.8
3,749,285	+		GFF3703	0.53	+0.0
3,749,287	-		GFF3703	0.53	-0.9
3,749,305	+		GFF3703	0.56	+1.6
3,749,329	-		GFF3703	0.58	-0.3
3,749,376	-		GFF3703	0.64	+0.5
3,749,396	-		GFF3703	0.66	-0.2
3,749,428	-		GFF3703	0.70	+0.4
3,749,460	-		GFF3703	0.73	+0.8
3,749,483	+		GFF3703	0.76	+0.6
3,749,483	+		GFF3703	0.76	-0.5
3,749,483	+		GFF3703	0.76	+0.6
3,749,483	+		GFF3703	0.76	-0.5
3,749,491	-		GFF3703	0.77	+0.7
3,749,491	-		GFF3703	0.77	+0.7
3,749,491	-		GFF3703	0.77	-0.5
3,749,491	-		GFF3703	0.77	+0.7
3,749,491	-		GFF3703	0.77	+0.7
3,749,493	-		GFF3703	0.77	-0.7
3,749,500	-		GFF3703	0.78	+1.3
3,749,523	+		GFF3703	0.81	+0.2
3,749,585	+		GFF3703	0.88	-1.6
3,749,590	+		GFF3703	0.89	+0.5
3,749,604	+				+0.4
3,749,604	+				+0.1
3,749,607	-				-1.8
3,749,610	+				+0.1
3,749,612	-				+0.2
3,749,632	+				+0.3
3,749,642	+				+0.0
3,749,823	+				+0.9
3,749,832	+				+0.3
3,749,855	+				-0.5
3,749,870	+				+0.5
3,749,906	-		GFF3704	0.11	+0.3
3,749,955	+		GFF3704	0.17	-0.6
3,749,971	+		GFF3704	0.19	-0.1
3,749,971	+		GFF3704	0.19	-0.2
3,749,971	+		GFF3704	0.19	-1.2
3,749,971	+		GFF3704	0.19	+1.3
3,749,971	+		GFF3704	0.19	+0.0
3,749,971	+		GFF3704	0.19	-0.5
3,749,971	+		GFF3704	0.19	+0.8
3,749,971	+		GFF3704	0.19	-0.5
3,749,971	+		GFF3704	0.19	-0.4
3,749,971	+		GFF3704	0.19	+1.6
3,749,979	-		GFF3704	0.20	-0.2
3,749,979	-		GFF3704	0.20	+2.3
3,749,979	-		GFF3704	0.20	+1.0
3,749,979	-		GFF3704	0.20	+0.9
3,749,979	-		GFF3704	0.20	+0.0
3,749,979	-		GFF3704	0.20	-0.9
3,749,999	-		GFF3704	0.22	+0.3
3,750,012	+		GFF3704	0.24	-1.1
3,750,026	-		GFF3704	0.25	+0.3
3,750,026	-		GFF3704	0.25	+0.4
3,750,028	+		GFF3704	0.26	+1.7
3,750,035	-		GFF3704	0.26	-0.3
3,750,076	+		GFF3704	0.31	-0.6
3,750,084	-		GFF3704	0.32	+0.5
3,750,094	-		GFF3704	0.33	-1.0
3,750,097	+		GFF3704	0.34	+0.2
3,750,129	-		GFF3704	0.37	+0.8
3,750,129	-		GFF3704	0.37	-0.1
3,750,134	-		GFF3704	0.38	-0.6
3,750,134	-		GFF3704	0.38	+0.7
3,750,188	+		GFF3704	0.44	-0.3
3,750,195	+		GFF3704	0.45	+0.1
3,750,196	-		GFF3704	0.45	+1.2
3,750,196	-		GFF3704	0.45	+0.8
3,750,196	-		GFF3704	0.45	+0.3
3,750,198	+		GFF3704	0.46	+0.3
3,750,212	-		GFF3704	0.47	-0.6
3,750,247	+		GFF3704	0.51	+0.8
3,750,247	+		GFF3704	0.51	+0.7
3,750,255	-		GFF3704	0.52	+0.5
3,750,310	-		GFF3704	0.59	+0.3
3,750,424	+		GFF3704	0.72	+0.9
3,750,450	+		GFF3704	0.75	-0.3
3,750,458	-		GFF3704	0.76	+0.6
3,750,461	+		GFF3704	0.77	-0.5
3,750,477	-		GFF3704	0.79	-0.3
3,750,489	-		GFF3704	0.80	-1.0
3,750,511	+		GFF3704	0.83	+0.3
3,750,521	-		GFF3704	0.84	-0.4
3,750,523	+		GFF3704	0.84	-1.0
3,750,526	-		GFF3704	0.84	+0.8
3,750,542	+		GFF3704	0.86	-0.2
3,750,547	+		GFF3704	0.87	+0.7
3,750,547	+		GFF3704	0.87	-2.6
3,750,550	-		GFF3704	0.87	-0.2
3,750,552	+		GFF3704	0.87	+0.0
3,750,552	+		GFF3704	0.87	-0.5
3,750,552	+		GFF3704	0.87	+0.8
3,750,555	-		GFF3704	0.88	-1.6
3,750,560	-		GFF3704	0.88	+1.0
3,750,567	+		GFF3704	0.89	-0.4
3,750,567	+		GFF3704	0.89	+1.3
3,750,567	+		GFF3704	0.89	-1.4
3,750,569	+		GFF3704	0.89	+1.1
3,750,579	+				+0.2
3,750,649	+				+0.2
3,750,658	+				-0.3
3,750,658	+				-0.1
3,750,664	+				+1.9
3,750,666	-				+0.2
3,750,668	+				-0.3
3,750,676	+				-1.7