Strain Fitness in Sphingobium sp. HT1-2 around GFF3663

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
3,705,249	+		GFF3661	0.80	-0.1
3,705,251	+		GFF3661	0.80	-0.4
3,705,256	-		GFF3661	0.80	-0.7
3,705,266	+		GFF3661	0.81	+0.5
3,705,271	+		GFF3661	0.82	-0.6
3,705,279	+		GFF3661	0.82	-1.6
3,705,279	-		GFF3661	0.82	-0.5
3,705,286	-		GFF3661	0.83	-2.2
3,705,288	-		GFF3661	0.83	+0.8
3,705,305	+		GFF3661	0.85	+2.0
3,705,329	+		GFF3661	0.87	-1.8
3,705,334	+		GFF3661	0.87	-0.1
3,705,334	+		GFF3661	0.87	-0.7
3,705,334	+		GFF3661	0.87	+1.1
3,705,334	+		GFF3661	0.87	-2.8
3,705,334	+		GFF3661	0.87	+0.5
3,705,334	+		GFF3661	0.87	+0.1
3,705,334	+		GFF3661	0.87	+0.2
3,705,334	+		GFF3661	0.87	+0.2
3,705,334	+		GFF3661	0.87	-0.5
3,705,337	-		GFF3661	0.88	-0.6
3,705,342	-		GFF3661	0.88	-0.5
3,705,342	-		GFF3661	0.88	+1.0
3,705,342	-		GFF3661	0.88	+0.5
3,705,342	-		GFF3661	0.88	-0.3
3,705,342	-		GFF3661	0.88	+0.4
3,705,343	+		GFF3661	0.88	-1.6
3,705,351	-		GFF3661	0.89	+1.0
3,705,356	-		GFF3661	0.90	+1.5
3,705,434	+				+0.1
3,705,437	+				-0.9
3,705,437	+				+0.3
3,705,437	+				-0.3
3,705,437	+				+1.7
3,705,437	+				+0.5
3,705,438	+				-0.7
3,705,439	+				+0.5
3,705,440	-				-0.9
3,705,445	-				-0.1
3,705,445	-				+1.2
3,705,445	-				-1.8
3,705,455	-				+0.3
3,705,458	+				-0.6
3,705,458	+				-0.1
3,705,466	-				+0.1
3,705,475	+				-0.7
3,705,476	+				-0.2
3,705,476	-				-1.0
3,705,484	-				+0.7
3,705,484	-				-0.5
3,705,484	-				-1.1
3,705,493	-				+0.5
3,705,508	+				-2.1
3,705,515	-				+0.5
3,705,580	+		GFF3662	0.17	-1.7
3,705,586	+		GFF3662	0.17	-1.0
3,705,594	-		GFF3662	0.19	+1.4
3,705,595	+		GFF3662	0.19	+0.7
3,705,595	+		GFF3662	0.19	+0.0
3,705,595	+		GFF3662	0.19	-2.3
3,705,597	+		GFF3662	0.19	-0.8
3,705,603	-		GFF3662	0.20	-0.1
3,705,603	-		GFF3662	0.20	-1.2
3,705,627	-		GFF3662	0.23	-0.5
3,705,634	+		GFF3662	0.24	-0.9
3,705,642	-		GFF3662	0.26	-2.1
3,705,642	-		GFF3662	0.26	-1.7
3,705,644	+		GFF3662	0.26	-0.0
3,705,644	+		GFF3662	0.26	-1.7
3,705,644	+		GFF3662	0.26	+0.9
3,705,644	+		GFF3662	0.26	-0.3
3,705,644	+		GFF3662	0.26	-1.7
3,705,644	+		GFF3662	0.26	-0.7
3,705,644	+		GFF3662	0.26	+0.5
3,705,644	+		GFF3662	0.26	-1.7
3,705,644	+		GFF3662	0.26	-1.0
3,705,644	+		GFF3662	0.26	+0.2
3,705,644	+		GFF3662	0.26	-0.3
3,705,644	+		GFF3662	0.26	-0.7
3,705,644	+		GFF3662	0.26	-0.1
3,705,644	+		GFF3662	0.26	-1.1
3,705,652	-		GFF3662	0.27	-0.5
3,705,652	-		GFF3662	0.27	-0.6
3,705,652	-		GFF3662	0.27	+0.1
3,705,652	-		GFF3662	0.27	-0.2
3,705,652	-		GFF3662	0.27	-0.0
3,705,652	-		GFF3662	0.27	+0.5
3,705,652	-		GFF3662	0.27	-1.4
3,705,652	-		GFF3662	0.27	+0.1
3,705,652	-		GFF3662	0.27	-0.0
3,705,652	-		GFF3662	0.27	+0.9
3,705,652	-		GFF3662	0.27	+0.1
3,705,652	-		GFF3662	0.27	-0.7
3,705,652	-		GFF3662	0.27	-1.9
3,705,652	-		GFF3662	0.27	+0.9
3,705,652	-		GFF3662	0.27	-0.8
3,705,652	-		GFF3662	0.27	-2.0
3,705,655	+		GFF3662	0.27	-2.1
3,705,655	+		GFF3662	0.27	-0.0
3,705,662	+		GFF3662	0.28	-0.6
3,705,663	-		GFF3662	0.29	+0.6
3,705,676	+		GFF3662	0.30	-1.3
3,705,722	+		GFF3662	0.37	-0.1
3,705,723	+		GFF3662	0.37	+0.1
3,705,730	+		GFF3662	0.38	-1.6
3,705,731	-		GFF3662	0.38	-0.9
3,705,735	+		GFF3662	0.39	-1.0
3,705,736	+		GFF3662	0.39	-1.6
3,705,738	-		GFF3662	0.39	+0.5
3,705,738	-		GFF3662	0.39	-0.1
3,705,738	-		GFF3662	0.39	-0.6
3,705,738	-		GFF3662	0.39	+0.3
3,705,746	+		GFF3662	0.41	-0.0
3,705,749	-		GFF3662	0.41	-0.5
3,705,749	-		GFF3662	0.41	-0.4
3,705,749	-		GFF3662	0.41	-0.4
3,705,749	-		GFF3662	0.41	-0.7
3,705,749	-		GFF3662	0.41	+0.2
3,705,759	-		GFF3662	0.42	+1.6
3,705,778	+		GFF3662	0.45	-0.0
3,705,778	+		GFF3662	0.45	-0.8
3,705,778	+		GFF3662	0.45	+0.0
3,705,778	+		GFF3662	0.45	-0.3
3,705,780	+		GFF3662	0.45	+0.9
3,705,783	-		GFF3662	0.46	-1.0
3,705,786	-		GFF3662	0.46	+0.1
3,705,786	-		GFF3662	0.46	+0.0
3,705,786	-		GFF3662	0.46	+0.3
3,705,786	-		GFF3662	0.46	-0.1
3,705,786	-		GFF3662	0.46	-0.3
3,705,786	-		GFF3662	0.46	-2.2
3,705,786	-		GFF3662	0.46	-0.4
3,705,786	-		GFF3662	0.46	-0.8
3,705,788	+		GFF3662	0.47	-1.4
3,705,791	-		GFF3662	0.47	-1.5
3,705,791	-		GFF3662	0.47	-1.0
3,705,794	-		GFF3662	0.47	-2.4
3,705,795	+		GFF3662	0.48	+0.9
3,705,820	-		GFF3662	0.51	-0.9
3,705,823	-		GFF3662	0.52	-0.9
3,705,823	-		GFF3662	0.52	-0.5
3,705,823	-		GFF3662	0.52	-0.2
3,705,855	+		GFF3662	0.56	-2.5
3,705,871	+		GFF3662	0.59	+0.0
3,705,871	+		GFF3662	0.59	-1.0
3,705,899	+		GFF3662	0.63	-2.0
3,705,899	+		GFF3662	0.63	-0.2
3,705,911	-		GFF3662	0.64	-0.5
3,705,911	-		GFF3662	0.64	+0.1
3,705,921	-		GFF3662	0.66	+0.1
3,705,926	-		GFF3662	0.67	+0.1
3,705,930	+		GFF3662	0.67	-0.5
3,705,938	-		GFF3662	0.68	+0.1
3,705,939	-		GFF3662	0.68	+0.6
3,705,939	-		GFF3662	0.68	+0.4
3,705,961	-		GFF3662	0.72	-0.1
3,705,968	-		GFF3662	0.73	+0.5
3,705,973	+		GFF3662	0.73	-0.8
3,705,973	+		GFF3662	0.73	-0.0
3,705,973	+		GFF3662	0.73	-0.0
3,705,973	+		GFF3662	0.73	+0.0
3,705,973	+		GFF3662	0.73	+0.1
3,705,973	+		GFF3662	0.73	+0.2
3,705,973	+		GFF3662	0.73	+0.3
3,705,973	+		GFF3662	0.73	-1.1
3,705,973	+		GFF3662	0.73	+0.4
3,705,973	+		GFF3662	0.73	+0.7
3,705,973	+		GFF3662	0.73	-0.3
3,705,976	-		GFF3662	0.74	-0.2
3,705,976	-		GFF3662	0.74	+0.7
3,705,981	-		GFF3662	0.74	-0.6
3,705,981	-		GFF3662	0.74	-0.6
3,705,981	-		GFF3662	0.74	-0.3
3,705,981	-		GFF3662	0.74	+0.2
3,705,981	-		GFF3662	0.74	-1.0
3,705,981	-		GFF3662	0.74	+1.2
3,705,981	-		GFF3662	0.74	-0.2
3,705,981	-		GFF3662	0.74	-1.6
3,705,981	-		GFF3662	0.74	+0.2
3,705,981	-		GFF3662	0.74	+0.5
3,705,981	-		GFF3662	0.74	+0.2
3,705,981	-		GFF3662	0.74	+0.2
3,705,982	-		GFF3662	0.75	-0.0
3,705,994	+		GFF3662	0.76	-1.0
3,705,998	+		GFF3662	0.77	-0.4
3,706,025	+		GFF3662	0.81	-1.0
3,706,071	-		GFF3662	0.87	-1.0
3,706,073	+		GFF3662	0.88	+0.4
3,706,073	+		GFF3662	0.88	-0.8
3,706,073	+		GFF3662	0.88	-0.2
3,706,080	+		GFF3662	0.89	+1.5
3,706,081	-		GFF3662	0.89	+0.3
3,706,081	-		GFF3662	0.89	-0.5
3,706,081	-		GFF3662	0.89	+0.2
3,706,081	-		GFF3662	0.89	-0.2
3,706,081	-		GFF3662	0.89	-0.1
3,706,088	+				-0.5
3,706,091	-				-0.2
3,706,093	-				+0.5
3,706,118	-				+0.6
3,706,129	+				+1.0
3,706,139	+				-0.1
3,706,139	+				-0.4
3,706,147	-				-1.1
3,706,147	-				-0.6
3,706,152	+				-0.7
3,706,153	+				+0.4
3,706,160	-				-1.2
3,706,160	-				-1.6
3,706,175	+				+0.1
3,706,240	-				+0.5
3,706,244	+				-2.5
3,706,258	-				-2.0
3,706,258	-				+0.1
3,706,285	+				-0.1
3,706,291	+				+0.2
3,706,291	+				-0.2
3,706,299	-				-0.5
3,706,304	+				-0.3
3,706,304	-				+0.5
3,706,311	+				+0.2
3,706,311	+				-1.9
3,706,312	-				+0.5
3,706,319	-				-0.0
3,706,319	-				+0.8
3,706,319	-				+0.7
3,706,330	+				-0.1
3,706,337	-				-0.2
3,706,338	-				-1.4
3,706,348	+		GFF3663	0.11	+0.2
3,706,348	+		GFF3663	0.11	-0.3
3,706,348	+		GFF3663	0.11	-0.0
3,706,348	+		GFF3663	0.11	+0.8
3,706,348	+		GFF3663	0.11	-0.2
3,706,356	-		GFF3663	0.11	+0.5
3,706,364	-		GFF3663	0.12	-0.8
3,706,364	-		GFF3663	0.12	+1.8
3,706,364	-		GFF3663	0.12	+0.1
3,706,373	+		GFF3663	0.13	-0.0
3,706,390	+		GFF3663	0.14	-0.2
3,706,437	-		GFF3663	0.19	-0.2
3,706,445	-		GFF3663	0.19	+0.7
3,706,446	+		GFF3663	0.20	+0.0
3,706,454	-		GFF3663	0.20	-0.4
3,706,454	-		GFF3663	0.20	-0.1
3,706,461	+		GFF3663	0.21	-0.1
3,706,469	-		GFF3663	0.22	+1.5
3,706,476	+		GFF3663	0.22	-0.7
3,706,485	+		GFF3663	0.23	+0.3
3,706,491	+		GFF3663	0.24	+0.7
3,706,496	+		GFF3663	0.24	-0.6
3,706,504	-		GFF3663	0.25	-0.2
3,706,541	+		GFF3663	0.28	-0.7
3,706,554	+		GFF3663	0.29	-1.9
3,706,561	+		GFF3663	0.30	-0.3
3,706,563	-		GFF3663	0.30	-0.7
3,706,585	+		GFF3663	0.32	+0.7
3,706,585	+		GFF3663	0.32	-2.1
3,706,593	-		GFF3663	0.33	+0.5
3,706,593	-		GFF3663	0.33	+0.3
3,706,593	-		GFF3663	0.33	-1.1
3,706,614	+		GFF3663	0.35	-0.6
3,706,629	+		GFF3663	0.36	+0.3
3,706,641	+		GFF3663	0.37	+0.2
3,706,660	+		GFF3663	0.39	-0.5
3,706,666	+		GFF3663	0.40	-1.1
3,706,666	+		GFF3663	0.40	-1.7
3,706,666	+		GFF3663	0.40	-0.6
3,706,666	+		GFF3663	0.40	-0.8
3,706,688	+		GFF3663	0.42	+1.0
3,706,765	+		GFF3663	0.49	-1.7
3,706,765	+		GFF3663	0.49	-0.1
3,706,765	+		GFF3663	0.49	+0.4
3,706,773	-		GFF3663	0.50	+1.5
3,706,792	-		GFF3663	0.51	-2.3
3,706,800	+		GFF3663	0.52	+0.2
3,706,800	+		GFF3663	0.52	+0.4
3,706,802	+		GFF3663	0.52	+0.7
3,706,805	-		GFF3663	0.53	+0.9
3,706,808	-		GFF3663	0.53	-0.8
3,706,808	-		GFF3663	0.53	-1.6
3,706,810	-		GFF3663	0.53	-1.1
3,706,813	-		GFF3663	0.53	+0.3
3,706,832	+		GFF3663	0.55	-0.9
3,706,832	+		GFF3663	0.55	-0.1
3,706,832	+		GFF3663	0.55	+0.4
3,706,832	+		GFF3663	0.55	-2.0
3,706,840	+		GFF3663	0.56	+0.0
3,706,840	+		GFF3663	0.56	-1.1
3,706,840	-		GFF3663	0.56	-0.3
3,706,840	-		GFF3663	0.56	+0.4
3,706,840	-		GFF3663	0.56	+0.3
3,706,848	-		GFF3663	0.56	+0.5
3,706,853	+		GFF3663	0.57	+0.4
3,706,883	-		GFF3663	0.60	-0.5
3,706,883	-		GFF3663	0.60	-1.6
3,706,907	-		GFF3663	0.62	-0.1
3,706,910	+		GFF3663	0.62	-1.7
3,706,916	+		GFF3663	0.63	-0.7
3,706,916	-		GFF3663	0.63	-1.2
3,706,931	+		GFF3663	0.64	-2.1
3,706,941	-		GFF3663	0.65	-1.5
3,706,959	-		GFF3663	0.67	+1.0
3,706,967	-		GFF3663	0.67	-1.5
3,706,978	-		GFF3663	0.68	-1.1
3,706,989	-		GFF3663	0.69	+0.3
3,706,991	+		GFF3663	0.70	-0.6
3,706,998	+		GFF3663	0.70	+0.1
3,706,999	+		GFF3663	0.70	-0.7
3,707,014	+		GFF3663	0.72	-1.8
3,707,014	+		GFF3663	0.72	-0.5
3,707,014	+		GFF3663	0.72	-0.1
3,707,027	-		GFF3663	0.73	-0.4
3,707,030	-		GFF3663	0.73	+0.9
3,707,034	+		GFF3663	0.74	-1.5
3,707,061	-		GFF3663	0.76	-1.3
3,707,061	-		GFF3663	0.76	-1.6
3,707,107	+		GFF3663	0.80	-1.3
3,707,110	-		GFF3663	0.81	-0.2
3,707,115	-		GFF3663	0.81	-0.0
3,707,115	-		GFF3663	0.81	+0.2
3,707,131	+		GFF3663	0.82	-1.7
3,707,139	-		GFF3663	0.83	+0.3
3,707,144	-		GFF3663	0.84	-0.9
3,707,144	-		GFF3663	0.84	-0.3
3,707,154	-		GFF3663	0.85	+0.4
3,707,154	-		GFF3663	0.85	-1.5
3,707,203	+		GFF3663	0.89	+0.5
3,707,207	+		GFF3663	0.89	-0.3
3,707,209	+		GFF3663	0.90	-0.3
3,707,209	+		GFF3663	0.90	+0.7
3,707,217	-				-1.6
3,707,221	-				+0.4
3,707,228	+				-0.5
3,707,234	+				+0.3
3,707,236	-				+0.7
3,707,237	-				-1.4
3,707,242	-				+0.4
3,707,285	-				+0.2
3,707,336	+				+1.0
3,707,336	-				-0.2
3,707,341	-				+0.9
3,707,349	+				+0.1
3,707,359	-				-1.3
3,707,370	+				+0.3
3,707,401	+		GFF3664	0.13	-1.3
3,707,437	+		GFF3664	0.23	-1.4
3,707,437	+		GFF3664	0.23	+0.6
3,707,441	+		GFF3664	0.24	-1.0
3,707,445	-		GFF3664	0.25	-2.3
3,707,445	-		GFF3664	0.25	+0.2
3,707,459	+		GFF3664	0.29	-0.5
3,707,460	-		GFF3664	0.29	+0.6
3,707,484	-		GFF3664	0.36	+0.0
3,707,485	+		GFF3664	0.36	+0.5
3,707,493	-		GFF3664	0.38	-0.3
3,707,499	+		GFF3664	0.40	+0.6
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3,707,537	+		GFF3664	0.50	-0.0
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3,707,543	+		GFF3664	0.52	+0.1
3,707,543	+		GFF3664	0.52	-1.7
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3,707,543	+		GFF3664	0.52	-1.5
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3,707,551	-		GFF3664	0.54	-0.9
3,707,576	+		GFF3664	0.61	+1.1
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3,707,589	+		GFF3664	0.64	-1.8
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3,707,620	+		GFF3664	0.73	-0.3
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3,707,653	+		GFF3664	0.82	+1.8
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3,707,682	+				-0.3
3,707,689	+				+0.3
3,707,692	-				-1.4
3,707,695	-				-0.6
3,707,697	-				-0.1
3,707,713	-				+0.3
3,707,715	+				-1.2
3,707,718	+				-0.3
3,707,723	+				+0.6
3,707,726	-				-0.0
3,707,728	-				-0.1
3,707,745	+				-0.6
3,707,755	+				-0.4
3,707,755	+				-1.1
3,707,755	+				+0.2
3,707,759	+				-0.9
3,707,759	+				+0.8
3,707,763	-				-0.3
3,707,772	+				+1.9
3,707,792	-				+0.8
3,707,830	+				-0.5
3,707,836	+				+0.9
3,707,836	+				-0.7
3,707,836	+				-0.6
3,707,844	-				-2.3
3,707,852	-				-2.1
3,707,856	+				+0.5
3,707,861	-				-1.7
3,707,861	-				+0.8
3,707,871	+				-0.0
3,707,875	+				-0.8
3,707,875	+				+0.7
3,707,875	+				-0.9
3,707,875	+				+1.1
3,707,881	+		GFF3665	0.10	-0.2
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3,708,027	-		GFF3665	0.24	-1.7
3,708,053	+		GFF3665	0.26	+0.5
3,708,053	+		GFF3665	0.26	+0.8
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3,708,061	-		GFF3665	0.27	-1.0
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3,708,137	+		GFF3665	0.34	-0.9
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3,708,285	+		GFF3665	0.48	-0.7
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3,708,291	-		GFF3665	0.48	-0.5