Strain Fitness in Sphingobium sp. HT1-2 around GFF3652

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
3,694,655	+				-1.8
3,694,655	+				-0.6
3,694,655	+				+0.1
3,694,655	+				-0.4
3,694,655	+				-1.1
3,694,657	+				-0.4
3,694,657	+				+0.1
3,694,657	+				-0.0
3,694,657	+				-1.3
3,694,657	+				+0.4
3,694,657	+				+0.2
3,694,663	-				+0.5
3,694,663	-				-1.2
3,694,664	+				+0.1
3,694,665	-				-0.7
3,694,665	-				+0.2
3,694,665	-				-0.7
3,694,673	-				+0.2
3,694,677	-				+1.0
3,694,677	-				-0.1
3,694,695	-				+0.8
3,694,695	-				-0.7
3,694,700	-				+0.4
3,694,705	-				+0.1
3,694,756	+				-0.4
3,694,768	+		GFF3651	0.11	+0.6
3,694,775	+		GFF3651	0.12	-0.8
3,694,800	+		GFF3651	0.15	+0.3
3,694,823	+		GFF3651	0.18	+0.4
3,694,823	+		GFF3651	0.18	+0.9
3,694,831	-		GFF3651	0.19	+0.1
3,694,831	-		GFF3651	0.19	-0.2
3,694,831	-		GFF3651	0.19	-0.6
3,694,843	-		GFF3651	0.20	-0.2
3,694,848	+		GFF3651	0.21	+0.2
3,694,854	-		GFF3651	0.22	+0.1
3,694,867	+		GFF3651	0.23	+0.1
3,694,876	+		GFF3651	0.24	-0.2
3,694,919	+		GFF3651	0.29	+0.1
3,694,921	+		GFF3651	0.30	-1.4
3,694,922	-		GFF3651	0.30	-0.6
3,694,922	-		GFF3651	0.30	-0.7
3,694,928	+		GFF3651	0.30	+1.0
3,694,929	-		GFF3651	0.31	+0.5
3,694,938	+		GFF3651	0.32	-1.1
3,694,938	+		GFF3651	0.32	+0.7
3,694,938	+		GFF3651	0.32	-0.0
3,694,938	+		GFF3651	0.32	+0.3
3,694,946	+		GFF3651	0.33	+0.3
3,694,946	-		GFF3651	0.33	+0.3
3,694,946	-		GFF3651	0.33	-2.1
3,694,946	-		GFF3651	0.33	-1.1
3,694,946	-		GFF3651	0.33	+0.1
3,694,946	-		GFF3651	0.33	+1.7
3,694,962	-		GFF3651	0.35	-0.9
3,694,963	+		GFF3651	0.35	+0.4
3,694,963	+		GFF3651	0.35	-1.4
3,694,963	+		GFF3651	0.35	-2.4
3,694,963	+		GFF3651	0.35	+0.0
3,694,963	+		GFF3651	0.35	+0.7
3,694,963	+		GFF3651	0.35	+0.1
3,694,963	+		GFF3651	0.35	+0.2
3,694,963	+		GFF3651	0.35	+0.3
3,694,966	-		GFF3651	0.35	-1.4
3,694,971	-		GFF3651	0.36	-1.1
3,694,971	-		GFF3651	0.36	+1.0
3,694,971	-		GFF3651	0.36	+0.3
3,694,987	+		GFF3651	0.38	+0.2
3,695,010	-		GFF3651	0.40	+0.0
3,695,015	+		GFF3651	0.41	+0.6
3,695,052	-		GFF3651	0.45	-1.2
3,695,053	-		GFF3651	0.45	-0.8
3,695,069	+		GFF3651	0.47	-2.0
3,695,096	-		GFF3651	0.51	-0.3
3,695,098	+		GFF3651	0.51	-2.7
3,695,113	+		GFF3651	0.53	-2.0
3,695,116	-		GFF3651	0.53	-0.4
3,695,141	+		GFF3651	0.56	-1.1
3,695,150	-		GFF3651	0.57	-0.3
3,695,161	+		GFF3651	0.58	-1.0
3,695,163	+		GFF3651	0.59	-1.3
3,695,171	-		GFF3651	0.60	-2.5
3,695,198	+		GFF3651	0.63	-0.1
3,695,198	+		GFF3651	0.63	+0.0
3,695,206	-		GFF3651	0.64	-0.4
3,695,206	-		GFF3651	0.64	-1.0
3,695,208	+		GFF3651	0.64	+0.1
3,695,216	+		GFF3651	0.65	+0.4
3,695,268	-		GFF3651	0.71	-0.9
3,695,271	+		GFF3651	0.72	-0.4
3,695,278	+		GFF3651	0.73	-1.8
3,695,293	-		GFF3651	0.74	-1.7
3,695,319	+		GFF3651	0.77	+0.1
3,695,319	+		GFF3651	0.77	-1.1
3,695,319	+		GFF3651	0.77	+0.5
3,695,319	+		GFF3651	0.77	-0.9
3,695,319	+		GFF3651	0.77	-0.5
3,695,319	+		GFF3651	0.77	-0.7
3,695,319	+		GFF3651	0.77	-0.2
3,695,319	+		GFF3651	0.77	-0.4
3,695,319	+		GFF3651	0.77	+0.7
3,695,319	+		GFF3651	0.77	-1.1
3,695,319	+		GFF3651	0.77	+0.2
3,695,319	+		GFF3651	0.77	+0.5
3,695,322	-		GFF3651	0.78	-0.3
3,695,327	-		GFF3651	0.78	-0.5
3,695,327	-		GFF3651	0.78	+0.6
3,695,327	-		GFF3651	0.78	+1.4
3,695,327	-		GFF3651	0.78	+0.5
3,695,327	-		GFF3651	0.78	-0.2
3,695,327	-		GFF3651	0.78	-0.6
3,695,327	-		GFF3651	0.78	+0.2
3,695,327	-		GFF3651	0.78	+1.3
3,695,327	-		GFF3651	0.78	+0.5
3,695,327	-		GFF3651	0.78	+0.6
3,695,327	-		GFF3651	0.78	-0.1
3,695,327	-		GFF3651	0.78	+0.3
3,695,327	-		GFF3651	0.78	+2.1
3,695,327	-		GFF3651	0.78	-1.9
3,695,327	-		GFF3651	0.78	+0.9
3,695,334	+		GFF3651	0.79	+0.0
3,695,334	+		GFF3651	0.79	-0.1
3,695,336	+		GFF3651	0.80	-2.3
3,695,369	+		GFF3651	0.84	-1.2
3,695,388	-		GFF3651	0.86	-1.6
3,695,405	-		GFF3651	0.88	-0.6
3,695,405	-		GFF3651	0.88	-1.4
3,695,419	-		GFF3651	0.90	-0.4
3,695,474	+				+0.9
3,695,482	-				+0.6
3,695,494	-				-0.6
3,695,499	-				-0.6
3,695,501	-				-1.4
3,695,562	+				-0.6
3,695,571	-				+1.7
3,695,596	-				-0.4
3,695,598	-				-2.0
3,695,611	+				-0.1
3,695,611	+				+0.7
3,695,646	+				-0.1
3,695,652	-				-1.8
3,695,653	+				+0.6
3,695,654	-				+0.4
3,695,661	-				-2.4
3,695,709	-		GFF3652	0.14	+0.0
3,695,709	-		GFF3652	0.14	+0.7
3,695,709	-		GFF3652	0.14	-0.0
3,695,713	+		GFF3652	0.15	+0.6
3,695,720	-		GFF3652	0.16	-0.8
3,695,723	+		GFF3652	0.16	+1.2
3,695,731	+		GFF3652	0.18	-1.1
3,695,731	+		GFF3652	0.18	+0.1
3,695,731	-		GFF3652	0.18	-1.9
3,695,733	+		GFF3652	0.18	+0.8
3,695,733	+		GFF3652	0.18	-0.5
3,695,733	+		GFF3652	0.18	-0.9
3,695,733	+		GFF3652	0.18	+0.6
3,695,739	-		GFF3652	0.19	+1.7
3,695,739	-		GFF3652	0.19	-0.1
3,695,739	-		GFF3652	0.19	-0.4
3,695,741	-		GFF3652	0.19	+0.5
3,695,746	+		GFF3652	0.20	-0.9
3,695,772	-		GFF3652	0.23	+0.3
3,695,777	+		GFF3652	0.24	+0.6
3,695,805	+		GFF3652	0.28	-0.6
3,695,811	+		GFF3652	0.29	+0.4
3,695,819	-		GFF3652	0.30	-0.2
3,695,848	+		GFF3652	0.34	-0.6
3,695,848	+		GFF3652	0.34	-0.4
3,695,848	+		GFF3652	0.34	-1.9
3,695,851	+		GFF3652	0.35	+0.7
3,695,853	+		GFF3652	0.35	-0.1
3,695,856	-		GFF3652	0.35	-0.9
3,695,859	-		GFF3652	0.36	+0.1
3,695,880	+		GFF3652	0.39	-0.7
3,695,893	+		GFF3652	0.41	-0.0
3,695,894	-		GFF3652	0.41	-0.3
3,695,916	+		GFF3652	0.44	-0.5
3,695,916	+		GFF3652	0.44	+0.3
3,695,916	+		GFF3652	0.44	-1.7
3,695,916	+		GFF3652	0.44	-0.1
3,695,916	+		GFF3652	0.44	-1.7
3,695,922	+		GFF3652	0.45	-1.3
3,695,922	+		GFF3652	0.45	-0.2
3,695,924	-		GFF3652	0.45	-0.4
3,695,924	-		GFF3652	0.45	+0.1
3,695,924	-		GFF3652	0.45	+0.1
3,695,930	-		GFF3652	0.46	+1.2
3,695,949	+		GFF3652	0.49	-0.3
3,695,955	-		GFF3652	0.50	+0.3
3,695,973	+		GFF3652	0.52	-0.2
3,696,005	-		GFF3652	0.57	+1.5
3,696,009	+		GFF3652	0.57	+0.5
3,696,030	-		GFF3652	0.60	+0.4
3,696,047	-		GFF3652	0.63	+0.8
3,696,047	-		GFF3652	0.63	-1.3
3,696,050	-		GFF3652	0.63	-1.1
3,696,052	-		GFF3652	0.64	-0.4
3,696,078	-		GFF3652	0.67	-1.2
3,696,078	-		GFF3652	0.67	-0.1
3,696,099	+		GFF3652	0.70	-1.4
3,696,099	+		GFF3652	0.70	-1.2
3,696,099	+		GFF3652	0.70	-1.2
3,696,107	-		GFF3652	0.71	-0.2
3,696,107	-		GFF3652	0.71	+0.1
3,696,107	-		GFF3652	0.71	-0.5
3,696,116	-		GFF3652	0.73	+0.0
3,696,156	-		GFF3652	0.78	-0.1
3,696,168	+		GFF3652	0.80	-0.8
3,696,168	+		GFF3652	0.80	+0.6
3,696,173	+		GFF3652	0.81	+0.3
3,696,176	-		GFF3652	0.81	-2.4
3,696,181	+		GFF3652	0.82	-0.3
3,696,181	+		GFF3652	0.82	+0.4
3,696,185	+		GFF3652	0.83	-0.5
3,696,189	-		GFF3652	0.83	+0.5
3,696,189	-		GFF3652	0.83	-2.0
3,696,189	-		GFF3652	0.83	+1.1
3,696,194	-		GFF3652	0.84	-1.4
3,696,209	-		GFF3652	0.86	-1.9
3,696,209	-		GFF3652	0.86	+0.3
3,696,238	+				-0.6
3,696,238	+				+0.9
3,696,238	+				-0.7
3,696,238	+				-2.3
3,696,238	+				-1.3
3,696,238	+				+0.4
3,696,246	-				-1.3
3,696,246	-				+0.2
3,696,246	-				+0.3
3,696,246	-				-0.6
3,696,255	+				-0.1
3,696,261	-				-0.3
3,696,264	+				-1.6
3,696,265	+				-0.4
3,696,273	-				-0.9
3,696,285	-				+0.1
3,696,298	-				-0.9
3,696,309	-				-0.7
3,696,326	+				-0.1
3,696,326	+				-2.1
3,696,326	+				-0.2
3,696,326	+				+0.4
3,696,334	-				+0.6
3,696,334	-				+0.0
3,696,334	-				-0.4
3,696,334	-				-0.8
3,696,334	-				-0.9
3,696,344	-				-1.8
3,696,344	-				-0.1
3,696,353	+				-1.6
3,696,358	-				-0.4
3,696,363	+				-0.6
3,696,363	+				+0.5
3,696,383	-				-0.6
3,696,393	-				-1.3
3,696,393	-				-0.5
3,696,428	+				-0.9
3,696,442	+		GFF3653	0.11	-0.8
3,696,442	+		GFF3653	0.11	+0.3
3,696,442	+		GFF3653	0.11	-2.4
3,696,442	+		GFF3653	0.11	+1.3
3,696,442	+		GFF3653	0.11	+0.7
3,696,442	+		GFF3653	0.11	-0.9
3,696,442	+		GFF3653	0.11	-0.6
3,696,443	+		GFF3653	0.11	-0.6
3,696,443	-		GFF3653	0.11	+0.3
3,696,443	-		GFF3653	0.11	-0.3
3,696,450	-		GFF3653	0.11	-0.6
3,696,450	-		GFF3653	0.11	-0.2
3,696,451	-		GFF3653	0.11	-0.2
3,696,461	+		GFF3653	0.12	-1.9
3,696,469	-		GFF3653	0.13	+0.9
3,696,494	+		GFF3653	0.14	+0.6
3,696,494	+		GFF3653	0.14	+0.4
3,696,553	+		GFF3653	0.19	+1.1
3,696,561	-		GFF3653	0.19	-0.3
3,696,565	+		GFF3653	0.20	+0.6
3,696,600	+		GFF3653	0.22	+0.2
3,696,610	-		GFF3653	0.23	-0.4
3,696,612	+		GFF3653	0.23	+0.4
3,696,612	+		GFF3653	0.23	+0.3
3,696,620	-		GFF3653	0.24	-2.9
3,696,624	+		GFF3653	0.24	-0.3
3,696,624	+		GFF3653	0.24	+0.1
3,696,630	-		GFF3653	0.24	-1.0
3,696,634	+		GFF3653	0.25	-1.4
3,696,640	-		GFF3653	0.25	+0.4
3,696,642	-		GFF3653	0.25	-1.4
3,696,652	-		GFF3653	0.26	-0.3
3,696,668	+		GFF3653	0.27	-0.7
3,696,678	-		GFF3653	0.28	-0.1
3,696,694	+		GFF3653	0.29	-1.0
3,696,698	+		GFF3653	0.29	+0.6
3,696,713	-		GFF3653	0.31	-0.9
3,696,735	-		GFF3653	0.32	+0.8
3,696,740	-		GFF3653	0.33	+0.5
3,696,742	-		GFF3653	0.33	-1.8
3,696,749	+		GFF3653	0.33	+0.2
3,696,749	+		GFF3653	0.33	-1.9
3,696,754	-		GFF3653	0.34	-0.1
3,696,754	-		GFF3653	0.34	-1.4
3,696,757	-		GFF3653	0.34	-0.1
3,696,757	-		GFF3653	0.34	-0.3
3,696,757	-		GFF3653	0.34	-1.3
3,696,757	-		GFF3653	0.34	-1.3
3,696,757	-		GFF3653	0.34	+0.6
3,696,761	-		GFF3653	0.34	-0.6
3,696,770	+		GFF3653	0.35	+1.3
3,696,784	-		GFF3653	0.36	-0.7
3,696,797	+		GFF3653	0.37	+0.4
3,696,800	+		GFF3653	0.37	-1.3
3,696,802	+		GFF3653	0.37	+0.1
3,696,807	+		GFF3653	0.38	-0.3
3,696,807	+		GFF3653	0.38	+0.2
3,696,810	-		GFF3653	0.38	-2.4
3,696,810	-		GFF3653	0.38	+0.4
3,696,810	-		GFF3653	0.38	+0.8
3,696,815	-		GFF3653	0.38	-1.1
3,696,815	-		GFF3653	0.38	-2.8
3,696,830	+		GFF3653	0.39	+0.3
3,696,846	+		GFF3653	0.40	-0.9
3,696,857	-		GFF3653	0.41	-0.3
3,696,859	+		GFF3653	0.41	-0.9
3,696,867	-		GFF3653	0.42	-1.1
3,696,880	+		GFF3653	0.43	-0.1
3,696,889	-		GFF3653	0.44	-0.4
3,696,894	+		GFF3653	0.44	+0.1
3,696,915	+		GFF3653	0.46	-0.6
3,696,963	-		GFF3653	0.49	-0.9
3,696,963	-		GFF3653	0.49	-0.8
3,696,965	-		GFF3653	0.49	-0.3
3,696,973	-		GFF3653	0.50	-2.0
3,696,977	+		GFF3653	0.50	-0.1
3,696,978	-		GFF3653	0.50	-0.3
3,696,985	-		GFF3653	0.51	-0.4
3,696,988	+		GFF3653	0.51	-1.1
3,696,996	-		GFF3653	0.52	-1.8
3,696,996	-		GFF3653	0.52	-1.4
3,696,996	-		GFF3653	0.52	+0.7
3,697,003	-		GFF3653	0.52	-0.2
3,697,003	-		GFF3653	0.52	-0.6
3,697,008	+		GFF3653	0.52	+0.6
3,697,008	+		GFF3653	0.52	+0.4
3,697,012	+		GFF3653	0.53	-0.3
3,697,012	+		GFF3653	0.53	+0.1
3,697,020	-		GFF3653	0.53	-1.3
3,697,020	-		GFF3653	0.53	-1.6
3,697,030	+		GFF3653	0.54	-0.4
3,697,040	+		GFF3653	0.55	-1.2
3,697,040	+		GFF3653	0.55	-0.6
3,697,040	+		GFF3653	0.55	-0.8
3,697,040	+		GFF3653	0.55	-0.4
3,697,040	+		GFF3653	0.55	-0.9
3,697,048	-		GFF3653	0.55	-1.7
3,697,048	-		GFF3653	0.55	-1.5
3,697,059	+		GFF3653	0.56	+0.3
3,697,074	+		GFF3653	0.57	-2.3
3,697,074	-		GFF3653	0.57	-0.3
3,697,082	-		GFF3653	0.58	+0.9
3,697,102	+		GFF3653	0.59	-0.3
3,697,102	+		GFF3653	0.59	-2.1
3,697,105	-		GFF3653	0.60	+0.1
3,697,109	+		GFF3653	0.60	-0.8
3,697,110	+		GFF3653	0.60	-0.2
3,697,117	-		GFF3653	0.60	+1.4
3,697,118	-		GFF3653	0.61	-0.3
3,697,118	-		GFF3653	0.61	-0.4
3,697,153	+		GFF3653	0.63	+0.4
3,697,161	-		GFF3653	0.64	-0.3
3,697,183	-		GFF3653	0.65	+0.6
3,697,190	-		GFF3653	0.66	+0.4
3,697,190	-		GFF3653	0.66	-0.7
3,697,226	-		GFF3653	0.69	+0.1
3,697,253	+		GFF3653	0.71	-0.6
3,697,258	+		GFF3653	0.71	-0.4
3,697,258	+		GFF3653	0.71	+1.2
3,697,261	-		GFF3653	0.71	-0.4
3,697,263	-		GFF3653	0.71	-1.2
3,697,276	+		GFF3653	0.72	-0.5
3,697,277	+		GFF3653	0.72	-0.1
3,697,277	+		GFF3653	0.72	-1.0
3,697,277	+		GFF3653	0.72	-1.0
3,697,277	+		GFF3653	0.72	+1.0
3,697,285	-		GFF3653	0.73	+0.7
3,697,285	-		GFF3653	0.73	-0.4
3,697,290	+		GFF3653	0.73	-0.3
3,697,298	-		GFF3653	0.74	+0.4