Strain Fitness in Sphingobium sp. HT1-2 around GFF3564

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
3,606,447	-		GFF3561	0.20	-1.7
3,606,449	-		GFF3561	0.21	-0.5
3,606,541	+		GFF3561	0.44	-0.4
3,606,550	+		GFF3561	0.46	-1.8
3,606,558	-		GFF3561	0.48	-0.1
3,606,566	+		GFF3561	0.50	-0.7
3,606,566	+		GFF3561	0.50	-0.6
3,606,574	-		GFF3561	0.52	+1.6
3,606,574	-		GFF3561	0.52	+0.4
3,606,574	-		GFF3561	0.52	-1.0
3,606,589	+		GFF3561	0.56	-0.4
3,606,590	+		GFF3561	0.56	-0.1
3,606,595	+		GFF3561	0.57	-1.0
3,606,598	-		GFF3561	0.58	+0.7
3,606,598	-		GFF3561	0.58	-1.4
3,606,598	-		GFF3561	0.58	-1.1
3,606,600	+		GFF3561	0.59	-1.8
3,606,600	+		GFF3561	0.59	-0.7
3,606,600	+		GFF3561	0.59	-0.9
3,606,608	-		GFF3561	0.61	-0.1
3,606,608	-		GFF3561	0.61	-1.4
3,606,646	-		GFF3561	0.70	+0.0
3,606,669	+		GFF3561	0.76	+0.6
3,606,675	-		GFF3561	0.77	+0.4
3,606,677	-		GFF3561	0.78	-0.4
3,606,702	-		GFF3561	0.84	-0.7
3,606,706	-		GFF3561	0.85	-0.3
3,606,706	-		GFF3561	0.85	-0.1
3,606,707	-		GFF3561	0.85	-1.3
3,606,797	+				-1.0
3,606,806	-		GFF3562	0.12	-0.4
3,606,814	+		GFF3562	0.14	-0.3
3,606,816	-		GFF3562	0.15	+0.3
3,606,822	-		GFF3562	0.17	-0.4
3,606,824	+		GFF3562	0.17	-0.4
3,606,824	+		GFF3562	0.17	+0.9
3,606,824	+		GFF3562	0.17	-1.1
3,606,824	+		GFF3562	0.17	+1.0
3,606,824	+		GFF3562	0.17	+0.3
3,606,825	+		GFF3562	0.18	+1.2
3,606,830	+		GFF3562	0.19	-0.1
3,606,830	+		GFF3562	0.19	+0.8
3,606,830	+		GFF3562	0.19	-0.9
3,606,830	+		GFF3562	0.19	+1.9
3,606,830	+		GFF3562	0.19	+1.1
3,606,833	-		GFF3562	0.20	+0.7
3,606,833	-		GFF3562	0.20	+0.3
3,606,833	-		GFF3562	0.20	+0.4
3,606,833	-		GFF3562	0.20	-0.8
3,606,833	-		GFF3562	0.20	-0.9
3,606,833	-		GFF3562	0.20	+0.6
3,606,838	+		GFF3562	0.21	-1.4
3,606,838	-		GFF3562	0.21	-1.8
3,606,838	-		GFF3562	0.21	+0.9
3,606,838	-		GFF3562	0.21	+0.1
3,606,838	-		GFF3562	0.21	-0.2
3,606,838	-		GFF3562	0.21	-0.6
3,606,896	+		GFF3562	0.38	+0.1
3,606,897	-		GFF3562	0.39	-0.6
3,606,900	-		GFF3562	0.39	-1.2
3,606,924	+		GFF3562	0.46	-0.7
3,606,961	+		GFF3562	0.57	+0.5
3,606,967	-		GFF3562	0.59	-0.8
3,606,971	+		GFF3562	0.60	-0.7
3,606,977	-		GFF3562	0.62	-1.3
3,606,979	-		GFF3562	0.62	-0.3
3,606,979	-		GFF3562	0.62	-0.1
3,606,979	-		GFF3562	0.62	-1.7
3,607,002	+		GFF3562	0.69	-0.2
3,607,027	+		GFF3562	0.76	-0.5
3,607,035	-		GFF3562	0.79	+1.5
3,607,045	+		GFF3562	0.81	-1.6
3,607,053	+		GFF3562	0.84	-0.7
3,607,053	+		GFF3562	0.84	-0.8
3,607,053	+		GFF3562	0.84	+0.0
3,607,053	+		GFF3562	0.84	-0.4
3,607,053	+		GFF3562	0.84	-0.8
3,607,053	+		GFF3562	0.84	+1.1
3,607,053	-		GFF3562	0.84	+0.1
3,607,053	-		GFF3562	0.84	-0.9
3,607,053	-		GFF3562	0.84	-0.9
3,607,053	-		GFF3562	0.84	+0.1
3,607,063	-		GFF3562	0.87	-0.8
3,607,093	+				+0.5
3,607,101	-				+0.2
3,607,101	-				-0.3
3,607,101	-				+0.3
3,607,101	-				+0.4
3,607,124	-				-2.0
3,607,130	+				+0.8
3,607,132	+		GFF3563	0.10	-0.3
3,607,138	-		GFF3563	0.12	-3.0
3,607,144	-		GFF3563	0.14	-1.4
3,607,144	-		GFF3563	0.14	-1.0
3,607,190	+		GFF3563	0.29	-0.7
3,607,190	+		GFF3563	0.29	-1.4
3,607,195	+		GFF3563	0.31	-0.1
3,607,195	+		GFF3563	0.31	-0.6
3,607,197	-		GFF3563	0.31	+0.7
3,607,198	-		GFF3563	0.32	-1.3
3,607,198	-		GFF3563	0.32	-0.6
3,607,203	-		GFF3563	0.33	+1.2
3,607,208	+		GFF3563	0.35	+0.3
3,607,232	+		GFF3563	0.43	-2.0
3,607,240	-		GFF3563	0.45	-0.1
3,607,240	-		GFF3563	0.45	+1.1
3,607,245	-		GFF3563	0.47	+0.4
3,607,247	+		GFF3563	0.48	-1.6
3,607,247	+		GFF3563	0.48	-0.1
3,607,247	+		GFF3563	0.48	+0.1
3,607,255	+		GFF3563	0.50	+0.3
3,607,255	+		GFF3563	0.50	-1.8
3,607,255	+		GFF3563	0.50	+0.1
3,607,255	-		GFF3563	0.50	+0.0
3,607,262	-		GFF3563	0.53	-1.3
3,607,264	-		GFF3563	0.53	+1.2
3,607,266	+		GFF3563	0.54	-0.9
3,607,266	+		GFF3563	0.54	+0.1
3,607,266	+		GFF3563	0.54	-1.0
3,607,273	+		GFF3563	0.56	-0.1
3,607,274	-		GFF3563	0.57	-0.8
3,607,277	+		GFF3563	0.58	-1.6
3,607,281	-		GFF3563	0.59	-1.3
3,607,281	-		GFF3563	0.59	-0.9
3,607,281	-		GFF3563	0.59	+1.1
3,607,281	-		GFF3563	0.59	-1.3
3,607,295	+		GFF3563	0.63	-0.9
3,607,302	+		GFF3563	0.66	-0.6
3,607,302	+		GFF3563	0.66	+0.4
3,607,302	+		GFF3563	0.66	-0.1
3,607,302	+		GFF3563	0.66	-1.8
3,607,302	+		GFF3563	0.66	-0.9
3,607,302	+		GFF3563	0.66	+0.3
3,607,302	+		GFF3563	0.66	-0.7
3,607,302	+		GFF3563	0.66	-1.3
3,607,302	+		GFF3563	0.66	+1.3
3,607,302	+		GFF3563	0.66	-0.3
3,607,304	+		GFF3563	0.66	-0.4
3,607,304	+		GFF3563	0.66	-1.1
3,607,308	-		GFF3563	0.68	-1.7
3,607,309	+		GFF3563	0.68	+0.4
3,607,310	-		GFF3563	0.68	-1.7
3,607,310	-		GFF3563	0.68	-1.9
3,607,310	-		GFF3563	0.68	+0.8
3,607,310	-		GFF3563	0.68	+0.1
3,607,310	-		GFF3563	0.68	-0.8
3,607,310	-		GFF3563	0.68	-0.8
3,607,310	-		GFF3563	0.68	-1.6
3,607,310	-		GFF3563	0.68	-0.1
3,607,310	-		GFF3563	0.68	+0.8
3,607,310	-		GFF3563	0.68	-0.9
3,607,310	-		GFF3563	0.68	-1.3
3,607,310	-		GFF3563	0.68	-0.3
3,607,310	-		GFF3563	0.68	-0.3
3,607,312	-		GFF3563	0.69	-0.3
3,607,315	-		GFF3563	0.70	-1.9
3,607,318	-		GFF3563	0.71	+0.3
3,607,318	-		GFF3563	0.71	-1.3
3,607,319	+		GFF3563	0.71	-0.1
3,607,322	-		GFF3563	0.72	-0.9
3,607,323	+		GFF3563	0.73	-0.1
3,607,324	+		GFF3563	0.73	+1.6
3,607,324	+		GFF3563	0.73	-1.9
3,607,324	+		GFF3563	0.73	-0.8
3,607,324	+		GFF3563	0.73	+0.6
3,607,324	+		GFF3563	0.73	-0.9
3,607,324	+		GFF3563	0.73	+1.0
3,607,327	-		GFF3563	0.74	-2.3
3,607,332	-		GFF3563	0.75	+0.2
3,607,332	-		GFF3563	0.75	+1.0
3,607,332	-		GFF3563	0.75	-1.7
3,607,340	+		GFF3563	0.78	-0.9
3,607,341	+		GFF3563	0.78	+0.3
3,607,346	+		GFF3563	0.80	-1.0
3,607,346	+		GFF3563	0.80	+1.6
3,607,354	-		GFF3563	0.83	-1.7
3,607,359	+		GFF3563	0.84	-0.2
3,607,359	+		GFF3563	0.84	-0.1
3,607,364	+		GFF3563	0.86	-0.9
3,607,364	+		GFF3563	0.86	+0.1
3,607,372	-		GFF3563	0.89	+0.2
3,607,372	-		GFF3563	0.89	+0.4
3,607,372	-		GFF3563	0.89	-1.8
3,607,400	+				-1.0
3,607,401	+				+0.8
3,607,446	-				-0.9
3,607,451	+				-1.6
3,607,451	+				+1.2
3,607,459	-				+0.8
3,607,503	-		GFF3564	0.20	-2.5
3,607,547	+		GFF3564	0.30	-2.2
3,607,555	-		GFF3564	0.32	+0.1
3,607,565	-		GFF3564	0.34	-1.4
3,607,570	-		GFF3564	0.36	-2.0
3,607,570	-		GFF3564	0.36	-1.7
3,607,584	-		GFF3564	0.39	-2.4
3,607,607	+		GFF3564	0.44	-0.4
3,607,625	-		GFF3564	0.48	-1.1
3,607,626	-		GFF3564	0.49	-2.7
3,607,636	-		GFF3564	0.51	-0.6
3,607,684	-		GFF3564	0.62	-1.1
3,607,687	-		GFF3564	0.63	-0.0
3,607,694	-		GFF3564	0.64	-0.7
3,607,704	+		GFF3564	0.67	-0.7
3,607,781	-		GFF3564	0.84	-0.7
3,607,816	-				+0.2
3,607,910	-				-2.1
3,607,910	-				+0.4
3,607,917	+				+0.7
3,607,920	-				-0.3
3,607,928	-				+0.1
3,607,943	+				-1.3
3,607,946	-				-1.9
3,607,951	-				+1.0
3,607,951	-				-1.8
3,607,951	-				+0.3
3,607,956	-				-1.4
3,607,963	-				-0.4
3,607,965	+				+0.1
3,607,967	+				-1.1
3,607,969	-				+1.1
3,607,973	-				-0.4
3,607,973	-				-1.5
3,607,999	+				-0.2
3,608,021	+		GFF3565	0.12	+0.0
3,608,021	+		GFF3565	0.12	+0.2
3,608,031	+		GFF3565	0.13	-0.3
3,608,031	+		GFF3565	0.13	-0.6
3,608,031	+		GFF3565	0.13	+0.0
3,608,031	+		GFF3565	0.13	+1.6
3,608,039	-		GFF3565	0.14	-1.0
3,608,039	-		GFF3565	0.14	+0.3
3,608,039	-		GFF3565	0.14	+1.6
3,608,039	-		GFF3565	0.14	-1.3
3,608,039	-		GFF3565	0.14	+0.1
3,608,043	+		GFF3565	0.14	-0.3
3,608,054	-		GFF3565	0.15	+0.7
3,608,062	+		GFF3565	0.16	-0.9
3,608,062	+		GFF3565	0.16	+0.3
3,608,062	+		GFF3565	0.16	+0.1
3,608,064	-		GFF3565	0.17	+1.1
3,608,065	+		GFF3565	0.17	-1.4
3,608,065	+		GFF3565	0.17	-2.6
3,608,094	+		GFF3565	0.20	-0.9
3,608,102	-		GFF3565	0.21	+0.1
3,608,104	+		GFF3565	0.21	+0.1
3,608,106	+		GFF3565	0.21	+1.3
3,608,106	+		GFF3565	0.21	-1.3
3,608,111	+		GFF3565	0.22	-2.7
3,608,111	+		GFF3565	0.22	-0.1
3,608,111	+		GFF3565	0.22	-0.4
3,608,116	+		GFF3565	0.22	+0.6
3,608,116	+		GFF3565	0.22	+0.7
3,608,119	-		GFF3565	0.23	+0.1
3,608,119	-		GFF3565	0.23	+0.0
3,608,119	-		GFF3565	0.23	-2.1
3,608,124	-		GFF3565	0.23	+0.3
3,608,132	+		GFF3565	0.24	-0.7
3,608,132	-		GFF3565	0.24	-1.0
3,608,167	-		GFF3565	0.28	-1.6
3,608,177	-		GFF3565	0.29	-1.9
3,608,182	-		GFF3565	0.30	+0.6
3,608,186	+		GFF3565	0.30	-2.1
3,608,186	+		GFF3565	0.30	-0.7
3,608,186	+		GFF3565	0.30	-1.4
3,608,187	-		GFF3565	0.30	-1.4
3,608,187	-		GFF3565	0.30	+0.1
3,608,192	-		GFF3565	0.31	+0.0
3,608,192	-		GFF3565	0.31	+1.0
3,608,194	-		GFF3565	0.31	-0.5
3,608,226	+		GFF3565	0.34	+0.5
3,608,226	+		GFF3565	0.34	-0.6
3,608,226	+		GFF3565	0.34	+0.1
3,608,226	+		GFF3565	0.34	+0.8
3,608,234	-		GFF3565	0.35	-1.0
3,608,234	-		GFF3565	0.35	-1.7
3,608,234	-		GFF3565	0.35	-1.7
3,608,234	-		GFF3565	0.35	-0.4
3,608,234	-		GFF3565	0.35	+0.1
3,608,234	-		GFF3565	0.35	-0.5
3,608,234	-		GFF3565	0.35	-0.2
3,608,244	-		GFF3565	0.36	-0.2
3,608,248	+		GFF3565	0.37	-0.5
3,608,248	+		GFF3565	0.37	-0.3
3,608,256	-		GFF3565	0.38	-0.3
3,608,256	-		GFF3565	0.38	+0.1
3,608,256	-		GFF3565	0.38	-2.1
3,608,256	-		GFF3565	0.38	+1.0
3,608,256	-		GFF3565	0.38	+1.7
3,608,256	-		GFF3565	0.38	-1.7
3,608,270	+		GFF3565	0.39	-1.1
3,608,270	+		GFF3565	0.39	-1.9
3,608,270	+		GFF3565	0.39	-0.1
3,608,278	-		GFF3565	0.40	+0.7
3,608,286	+		GFF3565	0.41	-2.3
3,608,286	+		GFF3565	0.41	-0.7
3,608,359	+		GFF3565	0.49	-1.5
3,608,359	+		GFF3565	0.49	-1.3
3,608,359	+		GFF3565	0.49	+0.1
3,608,367	-		GFF3565	0.50	-1.7
3,608,367	-		GFF3565	0.50	-0.4
3,608,367	-		GFF3565	0.50	+0.1
3,608,371	+		GFF3565	0.50	+2.5
3,608,406	+		GFF3565	0.54	+0.2
3,608,411	+		GFF3565	0.55	+1.6
3,608,416	-		GFF3565	0.55	-0.5
3,608,442	+		GFF3565	0.58	-0.1
3,608,447	+		GFF3565	0.59	+0.8
3,608,447	+		GFF3565	0.59	+0.6
3,608,450	-		GFF3565	0.59	-0.9
3,608,450	-		GFF3565	0.59	-0.7
3,608,457	-		GFF3565	0.60	-0.4
3,608,463	+		GFF3565	0.61	-0.3
3,608,463	+		GFF3565	0.61	-1.8
3,608,463	+		GFF3565	0.61	+0.0
3,608,463	+		GFF3565	0.61	-0.8
3,608,463	+		GFF3565	0.61	-0.4
3,608,463	+		GFF3565	0.61	+1.0
3,608,463	+		GFF3565	0.61	-2.2
3,608,463	+		GFF3565	0.61	-0.4
3,608,463	+		GFF3565	0.61	-0.1
3,608,464	+		GFF3565	0.61	-0.4
3,608,465	-		GFF3565	0.61	-1.0
3,608,468	+		GFF3565	0.61	+0.0
3,608,470	+		GFF3565	0.61	-0.6
3,608,471	-		GFF3565	0.61	+0.8
3,608,471	-		GFF3565	0.61	-1.3
3,608,471	-		GFF3565	0.61	-1.9
3,608,471	-		GFF3565	0.61	-0.4
3,608,471	-		GFF3565	0.61	-0.2
3,608,471	-		GFF3565	0.61	+0.1
3,608,471	-		GFF3565	0.61	-0.6
3,608,476	-		GFF3565	0.62	+0.7
3,608,484	+		GFF3565	0.63	+1.5
3,608,487	-		GFF3565	0.63	-2.6
3,608,502	+		GFF3565	0.65	+0.3
3,608,502	+		GFF3565	0.65	-1.1
3,608,502	+		GFF3565	0.65	-2.1
3,608,502	+		GFF3565	0.65	-1.7
3,608,502	+		GFF3565	0.65	-2.5
3,608,507	+		GFF3565	0.65	-2.5
3,608,507	+		GFF3565	0.65	-1.8
3,608,507	+		GFF3565	0.65	-0.8
3,608,507	+		GFF3565	0.65	-1.4
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