Strain Fitness in Sphingobium sp. HT1-2 around GFF3498

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
3,535,409	-		GFF3496	0.90	-0.9
3,535,409	-		GFF3496	0.90	-0.3
3,535,409	-		GFF3496	0.90	+0.3
3,535,409	-		GFF3496	0.90	+0.9
3,535,409	-		GFF3496	0.90	-0.3
3,535,409	-		GFF3496	0.90	-1.3
3,535,409	-		GFF3496	0.90	-0.4
3,535,409	-		GFF3496	0.90	-0.7
3,535,421	-				-2.2
3,535,421	-				-0.6
3,535,423	+				+0.4
3,535,423	+				-0.7
3,535,423	+				-2.4
3,535,423	+				-0.4
3,535,423	+				-1.1
3,535,423	+				+0.0
3,535,423	+				+0.8
3,535,423	+				+0.4
3,535,423	+				-0.2
3,535,423	+				+0.0
3,535,423	+				+0.1
3,535,423	+				-0.2
3,535,423	+				-1.8
3,535,423	+				-0.2
3,535,423	+				-0.9
3,535,428	+				-1.6
3,535,431	-				+0.7
3,535,431	-				-0.2
3,535,431	-				+0.1
3,535,431	-				+0.6
3,535,431	-				-2.0
3,535,431	-				-1.6
3,535,431	-				+0.3
3,535,431	-				+0.6
3,535,431	-				+0.4
3,535,431	-				+0.9
3,535,431	-				+1.0
3,535,431	-				-2.3
3,535,431	-				+0.4
3,535,431	-				-1.0
3,535,431	-				+1.3
3,535,431	-				-1.3
3,535,431	-				+0.6
3,535,431	-				+0.2
3,535,431	-				+0.6
3,535,431	-				+0.2
3,535,431	-				-0.8
3,535,431	-				+0.3
3,535,431	-				+1.3
3,535,431	-				-0.3
3,535,431	-				-0.7
3,535,431	-				-0.5
3,535,436	-				-0.3
3,535,469	+				+0.6
3,535,478	+				-0.5
3,535,478	+				+0.6
3,535,478	+				+0.2
3,535,478	+				+0.9
3,535,486	-				+1.1
3,535,486	-				-0.4
3,535,486	-				+0.9
3,535,486	-				+0.3
3,535,486	-				+0.1
3,535,486	-				-0.3
3,535,494	-				+0.7
3,535,496	+				+0.6
3,535,496	+				-1.2
3,535,503	+				-2.3
3,535,504	-				-2.1
3,535,504	-				+0.1
3,535,504	-				+1.4
3,535,504	-				-0.4
3,535,504	-				-2.0
3,535,504	-				-0.9
3,535,511	-				-0.0
3,535,512	+				+0.8
3,535,512	-				-1.5
3,535,513	+				+0.6
3,535,514	+				-0.3
3,535,520	-				+1.0
3,535,522	-				+1.7
3,535,525	+				+0.7
3,535,533	-				-2.9
3,535,535	-				+0.3
3,535,540	-				+1.1
3,535,549	+				+0.9
3,535,557	-				+0.5
3,535,582	-				+0.9
3,535,622	+				-0.0
3,535,622	+				-1.4
3,535,622	+				-0.9
3,535,622	+				+0.7
3,535,622	+				-1.3
3,535,630	+				+0.4
3,535,630	+				-0.3
3,535,630	+				-2.1
3,535,630	-				+0.2
3,535,630	-				-0.4
3,535,630	-				-0.8
3,535,630	-				+0.0
3,535,638	-				-0.3
3,535,649	-				+1.0
3,535,650	+				-1.8
3,535,650	+				+0.2
3,535,658	-				-0.6
3,535,658	-				-0.3
3,535,658	-				-0.5
3,535,658	-				-0.8
3,535,678	+				+0.6
3,535,684	-				-0.3
3,535,686	-				-1.2
3,535,688	+				-1.6
3,535,688	+				+0.7
3,535,688	+				-1.1
3,535,688	+				+0.8
3,535,688	+				-1.4
3,535,691	-				+0.1
3,535,691	-				-1.3
3,535,718	+				-0.3
3,535,721	-				-1.2
3,535,723	+				+0.0
3,535,723	+				-0.7
3,535,723	+				-0.4
3,535,723	-				-0.0
3,535,731	-				-1.9
3,535,731	-				-0.8
3,535,731	-				+1.4
3,535,731	-				-0.6
3,535,754	+				+0.1
3,535,764	-				-1.2
3,535,810	+				+0.5
3,535,819	+				-2.9
3,535,819	+				+0.5
3,535,823	-				-0.7
3,535,823	-				-0.4
3,535,824	-				-1.0
3,535,833	+				-0.7
3,535,848	+				-1.9
3,535,848	+				-0.1
3,535,862	+		GFF3497	0.11	+0.9
3,535,872	+		GFF3497	0.12	+0.4
3,535,886	+		GFF3497	0.15	-1.4
3,535,894	-		GFF3497	0.16	-2.2
3,535,924	+		GFF3497	0.21	-1.3
3,535,931	+		GFF3497	0.22	-0.0
3,535,932	-		GFF3497	0.22	+0.7
3,535,932	-		GFF3497	0.22	+0.7
3,535,932	-		GFF3497	0.22	-0.1
3,535,932	-		GFF3497	0.22	-0.6
3,535,950	+		GFF3497	0.25	-0.4
3,535,964	-		GFF3497	0.27	-0.4
3,535,991	-		GFF3497	0.32	-0.9
3,535,995	+		GFF3497	0.32	+0.5
3,536,012	-		GFF3497	0.35	-2.1
3,536,048	-		GFF3497	0.41	+0.9
3,536,057	-		GFF3497	0.42	+0.6
3,536,058	-		GFF3497	0.43	+0.4
3,536,058	-		GFF3497	0.43	-0.7
3,536,059	+		GFF3497	0.43	-0.4
3,536,067	-		GFF3497	0.44	-0.7
3,536,067	-		GFF3497	0.44	-0.9
3,536,068	-		GFF3497	0.44	+1.2
3,536,082	+		GFF3497	0.46	-0.6
3,536,140	+		GFF3497	0.56	-0.7
3,536,168	-		GFF3497	0.60	-0.1
3,536,177	+		GFF3497	0.62	-0.5
3,536,178	+		GFF3497	0.62	-1.3
3,536,182	+		GFF3497	0.63	-0.2
3,536,182	-		GFF3497	0.63	-1.6
3,536,183	+		GFF3497	0.63	-1.0
3,536,185	-		GFF3497	0.63	-1.2
3,536,185	-		GFF3497	0.63	+1.2
3,536,186	-		GFF3497	0.63	+0.6
3,536,190	-		GFF3497	0.64	-1.9
3,536,190	-		GFF3497	0.64	-2.5
3,536,206	+		GFF3497	0.67	-0.1
3,536,206	+		GFF3497	0.67	-1.4
3,536,206	+		GFF3497	0.67	-1.8
3,536,231	+		GFF3497	0.71	-1.7
3,536,236	+		GFF3497	0.71	-0.0
3,536,263	+		GFF3497	0.76	-0.9
3,536,263	+		GFF3497	0.76	-1.1
3,536,297	+		GFF3497	0.81	+0.5
3,536,297	+		GFF3497	0.81	-1.8
3,536,297	+		GFF3497	0.81	+0.4
3,536,297	+		GFF3497	0.81	-0.3
3,536,297	+		GFF3497	0.81	+0.7
3,536,297	+		GFF3497	0.81	-1.7
3,536,305	-		GFF3497	0.83	-1.4
3,536,305	-		GFF3497	0.83	+0.9
3,536,310	-		GFF3497	0.83	+0.5
3,536,311	-		GFF3497	0.83	-1.4
3,536,334	-		GFF3497	0.87	-0.0
3,536,335	-		GFF3497	0.87	-0.8
3,536,346	+		GFF3497	0.89	-1.9
3,536,386	-				-0.3
3,536,393	+				-0.3
3,536,401	-				+1.4
3,536,422	+				+0.9
3,536,422	+				-0.6
3,536,422	+				+0.2
3,536,422	+				+0.4
3,536,422	+				-1.0
3,536,422	+				-1.0
3,536,422	+				-0.9
3,536,422	+				+0.2
3,536,424	-				+0.3
3,536,425	-				-0.6
3,536,430	-				+1.2
3,536,430	-				-1.4
3,536,430	-				+0.7
3,536,430	-				-1.2
3,536,430	-				-1.1
3,536,430	-				+0.7
3,536,430	-				-1.2
3,536,430	-				+0.3
3,536,430	-				-0.4
3,536,430	-				+0.9
3,536,430	-				-1.5
3,536,430	-				+0.2
3,536,430	-				+0.7
3,536,435	-				-0.9
3,536,458	-				-0.3
3,536,460	+				+0.5
3,536,460	+				-0.1
3,536,465	+				-0.2
3,536,483	-				-1.6
3,536,483	-				-1.3
3,536,537	-		GFF3498	0.17	-0.8
3,536,537	-		GFF3498	0.17	-0.1
3,536,537	-		GFF3498	0.17	+1.6
3,536,560	+		GFF3498	0.20	-2.3
3,536,562	+		GFF3498	0.20	-0.7
3,536,585	-		GFF3498	0.23	-1.6
3,536,585	-		GFF3498	0.23	-1.7
3,536,602	-		GFF3498	0.25	-0.3
3,536,617	+		GFF3498	0.27	+0.0
3,536,625	-		GFF3498	0.28	-0.7
3,536,634	+		GFF3498	0.30	+0.6
3,536,634	+		GFF3498	0.30	-0.1
3,536,642	-		GFF3498	0.31	+0.6
3,536,642	-		GFF3498	0.31	+0.6
3,536,642	-		GFF3498	0.31	-1.2
3,536,644	+		GFF3498	0.31	+0.3
3,536,644	+		GFF3498	0.31	-0.6
3,536,649	+		GFF3498	0.31	-1.2
3,536,649	+		GFF3498	0.31	-0.3
3,536,652	-		GFF3498	0.32	-1.4
3,536,657	-		GFF3498	0.33	-1.8
3,536,657	-		GFF3498	0.33	-0.7
3,536,657	-		GFF3498	0.33	-1.2
3,536,657	-		GFF3498	0.33	+0.4
3,536,674	-		GFF3498	0.35	-0.2
3,536,683	-		GFF3498	0.36	-1.3
3,536,685	+		GFF3498	0.36	-1.0
3,536,685	+		GFF3498	0.36	-0.7
3,536,693	-		GFF3498	0.37	+0.3
3,536,708	+		GFF3498	0.39	+0.3
3,536,709	+		GFF3498	0.39	-1.0
3,536,709	+		GFF3498	0.39	-0.2
3,536,715	-		GFF3498	0.40	-0.7
3,536,717	-		GFF3498	0.40	-1.9
3,536,717	-		GFF3498	0.40	-0.2
3,536,719	+		GFF3498	0.41	-0.6
3,536,720	+		GFF3498	0.41	-2.9
3,536,720	+		GFF3498	0.41	-1.2
3,536,722	-		GFF3498	0.41	+0.4
3,536,727	+		GFF3498	0.42	+0.4
3,536,727	+		GFF3498	0.42	-0.3
3,536,733	-		GFF3498	0.43	-1.4
3,536,740	+		GFF3498	0.43	+0.1
3,536,759	+		GFF3498	0.46	-0.9
3,536,759	+		GFF3498	0.46	-0.4
3,536,759	+		GFF3498	0.46	+0.9
3,536,787	+		GFF3498	0.50	+0.5
3,536,817	+		GFF3498	0.54	-0.0
3,536,817	+		GFF3498	0.54	-0.2
3,536,817	+		GFF3498	0.54	-0.3
3,536,821	-		GFF3498	0.54	-0.4
3,536,846	+		GFF3498	0.57	+0.1
3,536,880	+		GFF3498	0.62	-0.3
3,536,880	+		GFF3498	0.62	-1.6
3,536,888	-		GFF3498	0.63	+0.6
3,536,906	+		GFF3498	0.65	-0.6
3,536,915	+		GFF3498	0.66	+0.6
3,536,945	-		GFF3498	0.70	+0.2
3,536,960	-		GFF3498	0.72	-1.1
3,537,013	+		GFF3498	0.79	+0.6
3,537,013	+		GFF3498	0.79	-1.1
3,537,013	+		GFF3498	0.79	+0.7
3,537,013	+		GFF3498	0.79	-0.9
3,537,013	+		GFF3498	0.79	-0.0
3,537,013	+		GFF3498	0.79	+1.0
3,537,021	-		GFF3498	0.80	-1.0
3,537,021	-		GFF3498	0.80	-1.4
3,537,032	+		GFF3498	0.82	-1.9
3,537,040	-		GFF3498	0.83	-0.8
3,537,045	-		GFF3498	0.83	+1.0
3,537,045	-		GFF3498	0.83	+0.8
3,537,047	+		GFF3498	0.84	-0.0
3,537,050	-		GFF3498	0.84	+0.6
3,537,050	-		GFF3498	0.84	-0.0
3,537,078	-		GFF3498	0.88	-0.5
3,537,100	-				-0.0
3,537,108	-				-1.9
3,537,112	-				+0.4
3,537,137	+				-0.6
3,537,151	-				-2.4
3,537,158	+				-0.2
3,537,159	+				+0.5
3,537,160	-				-1.0
3,537,165	-				+0.4
3,537,166	-				+1.2
3,537,176	-				+1.0
3,537,190	+				+0.6
3,537,190	+				-1.3
3,537,190	+				-1.0
3,537,193	-				+0.4
3,537,198	-				+0.7
3,537,237	+				-0.8
3,537,237	+				-3.0
3,537,237	+				-1.3
3,537,237	+				+0.2
3,537,237	+				+0.3
3,537,237	+				-1.3
3,537,245	-				+0.1
3,537,245	-				+0.1
3,537,268	+				-1.3
3,537,286	-				+0.4
3,537,321	+				-1.2
3,537,321	+				-0.3
3,537,322	+				-0.9
3,537,328	+				-0.8
3,537,329	-				-0.3
3,537,329	-				+0.0
3,537,329	-				+0.3
3,537,329	-				-1.9
3,537,357	+				-0.2
3,537,377	+				+0.4
3,537,385	+				-0.9
3,537,385	+				-0.2
3,537,385	-				-0.8
3,537,387	+				-1.7
3,537,393	-				-1.3
3,537,395	-				-0.4
3,537,405	-				-2.1
3,537,438	-				-0.6
3,537,440	+				-0.1
3,537,465	+				-1.5
3,537,465	+				-1.1
3,537,465	+				-2.6
3,537,465	+				+0.5
3,537,465	+				-1.3
3,537,465	+				-2.1
3,537,465	+				+0.3
3,537,465	+				-0.7
3,537,465	+				-2.3
3,537,465	+				-0.2
3,537,465	+				-0.0
3,537,465	+				-1.0
3,537,465	+				+1.2
3,537,471	+				+0.3
3,537,471	+				-1.2
3,537,471	+				+0.3
3,537,471	+				-1.7
3,537,471	+				-0.1
3,537,473	-				-0.4
3,537,473	-				-0.2
3,537,473	-				-2.9
3,537,473	-				+0.1
3,537,473	-				+1.2
3,537,473	-				-1.1
3,537,473	-				-0.0
3,537,473	-				-1.2
3,537,473	-				-0.5
3,537,473	-				-0.1
3,537,473	-				+0.4
3,537,499	-				-0.9
3,537,523	+				-1.4
3,537,531	-				-1.8
3,537,531	-				-0.3
3,537,531	-				+1.0
3,537,533	+				-1.6
3,537,581	+				+0.6
3,537,581	+				+0.2
3,537,586	+				-1.4
3,537,586	+				+0.4
3,537,586	+				+0.7
3,537,594	-				-0.4
3,537,594	-				-2.3
3,537,594	-				-1.7
3,537,612	-				-2.1
3,537,619	+				+0.1
3,537,628	+				-0.1
3,537,628	+				-0.6
3,537,628	+				-0.4
3,537,633	+				-1.2
3,537,636	-				-1.0
3,537,636	-				-2.0
3,537,636	-				+0.1
3,537,636	-				-0.4
3,537,636	-				-1.0
3,537,646	-				+0.1
3,537,646	-				-0.8
3,537,646	-				-0.4
3,537,652	-				-0.7
3,537,681	+				-0.4
3,537,683	+				-0.3
3,537,683	+				-2.1
3,537,683	+				-1.6
3,537,687	+				-0.4
3,537,691	-				-0.5
3,537,691	-				-1.0
3,537,691	-				+0.3
3,537,691	-				+0.6
3,537,691	-				-1.3
3,537,691	-				-0.7
3,537,695	-				+0.7
3,537,719	+				-1.3
3,537,766	+		GFF3499	0.11	-1.1
3,537,803	+		GFF3499	0.21	+0.7
3,537,803	+		GFF3499	0.21	+0.5
3,537,803	+		GFF3499	0.21	-2.0
3,537,808	+		GFF3499	0.22	-0.3
3,537,808	+		GFF3499	0.22	-1.4
3,537,808	+		GFF3499	0.22	+1.5
3,537,816	-		GFF3499	0.24	-1.3
3,537,816	-		GFF3499	0.24	+1.1
3,537,824	-		GFF3499	0.26	+0.4
3,537,834	+		GFF3499	0.29	+0.6
3,537,848	+		GFF3499	0.33	-0.8
3,537,856	-		GFF3499	0.35	-0.6
3,537,877	+		GFF3499	0.40	-1.4
3,537,879	+		GFF3499	0.41	+0.0
3,537,887	-		GFF3499	0.43	-0.6
3,537,887	-		GFF3499	0.43	-1.0
3,537,903	+		GFF3499	0.47	-2.2
3,537,905	+		GFF3499	0.48	-3.3
3,537,905	-		GFF3499	0.48	-1.7
3,537,910	+		GFF3499	0.49	-0.9
3,537,917	+		GFF3499	0.51	+0.6
3,537,920	-		GFF3499	0.52	+0.3
3,537,922	+		GFF3499	0.52	-0.8
3,537,926	-		GFF3499	0.53	+1.0
3,537,930	-		GFF3499	0.54	-1.5
3,537,932	+		GFF3499	0.55	-0.7
3,537,955	+		GFF3499	0.61	-0.5
3,537,963	-		GFF3499	0.63	-0.3
3,537,975	+		GFF3499	0.66	+0.6
3,537,975	+		GFF3499	0.66	+1.2
3,537,975	+		GFF3499	0.66	-0.5
3,537,975	+		GFF3499	0.66	+0.2
3,537,975	-		GFF3499	0.66	+0.8
3,537,983	-		GFF3499	0.68	+0.3
3,537,983	-		GFF3499	0.68	-1.1
3,537,983	-		GFF3499	0.68	+0.7
3,537,985	+		GFF3499	0.69	-0.8
3,537,985	+		GFF3499	0.69	+0.2
3,537,985	+		GFF3499	0.69	+1.0
3,537,990	+		GFF3499	0.70	-0.3
3,537,993	-		GFF3499	0.71	-0.4
3,537,998	-		GFF3499	0.72	+0.4
3,538,007	-		GFF3499	0.75	+0.6
3,538,013	+		GFF3499	0.76	-0.1
3,538,013	+		GFF3499	0.76	-1.8
3,538,013	+		GFF3499	0.76	+0.1
3,538,013	+		GFF3499	0.76	+0.2
3,538,018	+		GFF3499	0.78	+1.0
3,538,021	-		GFF3499	0.78	-0.3
3,538,021	-		GFF3499	0.78	-1.9
3,538,023	+		GFF3499	0.79	-1.3
3,538,028	+		GFF3499	0.80	-0.1
3,538,028	+		GFF3499	0.80	-1.3
3,538,028	+		GFF3499	0.80	-0.3
3,538,031	-		GFF3499	0.81	-0.5
3,538,031	-		GFF3499	0.81	-0.4
3,538,033	+		GFF3499	0.81	+0.7
3,538,033	+		GFF3499	0.81	-1.0
3,538,036	-		GFF3499	0.82	+0.2
3,538,036	-		GFF3499	0.82	-1.4
3,538,036	-		GFF3499	0.82	-0.1
3,538,036	-		GFF3499	0.82	+1.0
3,538,036	-		GFF3499	0.82	-1.9
3,538,041	-		GFF3499	0.84	-2.3
3,538,041	-		GFF3499	0.84	+1.4
3,538,041	-		GFF3499	0.84	+0.9
3,538,043	+		GFF3499	0.84	-0.1
3,538,045	+		GFF3499	0.85	+0.6
3,538,051	+		GFF3499	0.86	+1.3
3,538,062	+		GFF3499	0.89	-1.0
3,538,070	-				-0.7
3,538,072	+				-0.1
3,538,072	+				-1.4
3,538,072	+				+1.1
3,538,080	-				-1.4
3,538,080	-				-1.3
3,538,097	+				-1.8
3,538,103	-				-2.7
3,538,105	-				-0.4
3,538,105	-				-1.4
3,538,144	-				-1.8
3,538,153	+				-1.0
3,538,153	+				-1.0