Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF345 and GFF346 are separated by 39 nucleotides GFF346 and GFF347 overlap by 11 nucleotides GFF347 and GFF348 are separated by 70 nucleotides
GFF345 - Molybdenum ABC transporter, substrate-binding protein ModA, at 337,548 to 338,333
GFF345
GFF346 - Molybdenum ABC transporter ATP-binding protein ModC, at 338,373 to 339,020
GFF346
GFF347 - Molybdenum ABC transporter permease protein ModB, at 339,010 to 339,711
GFF347
GFF348 - Capsular polysaccharide export system protein KpsS, at 339,782 to 341,068
GFF348
Position (kb) 338
339
340 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 337.375 kb on - strand at 337.375 kb on - strand at 337.375 kb on - strand at 337.378 kb on + strand at 337.412 kb on - strand at 337.416 kb on + strand at 337.436 kb on + strand at 337.436 kb on + strand at 337.436 kb on + strand at 337.444 kb on - strand at 337.595 kb on + strand at 337.595 kb on + strand at 337.624 kb on - strand at 337.634 kb on + strand, within GFF345 at 337.634 kb on + strand, within GFF345 at 337.642 kb on - strand, within GFF345 at 337.642 kb on - strand, within GFF345 at 337.642 kb on - strand, within GFF345 at 337.642 kb on - strand, within GFF345 at 337.645 kb on + strand, within GFF345 at 337.685 kb on - strand, within GFF345 at 337.703 kb on - strand, within GFF345 at 337.710 kb on + strand, within GFF345 at 337.716 kb on + strand, within GFF345 at 337.731 kb on + strand, within GFF345 at 337.731 kb on + strand, within GFF345 at 337.731 kb on + strand, within GFF345 at 337.739 kb on - strand, within GFF345 at 337.739 kb on - strand, within GFF345 at 337.739 kb on - strand, within GFF345 at 337.739 kb on - strand, within GFF345 at 337.739 kb on - strand, within GFF345 at 337.739 kb on - strand, within GFF345 at 337.739 kb on - strand, within GFF345 at 337.758 kb on - strand, within GFF345 at 337.763 kb on - strand, within GFF345 at 337.769 kb on + strand, within GFF345 at 337.777 kb on - strand, within GFF345 at 337.786 kb on + strand, within GFF345 at 337.786 kb on + strand, within GFF345 at 337.827 kb on - strand, within GFF345 at 337.830 kb on + strand, within GFF345 at 337.875 kb on + strand, within GFF345 at 337.885 kb on + strand, within GFF345 at 337.951 kb on + strand, within GFF345 at 337.951 kb on + strand, within GFF345 at 337.964 kb on - strand, within GFF345 at 337.990 kb on - strand, within GFF345 at 338.077 kb on + strand, within GFF345 at 338.094 kb on + strand, within GFF345 at 338.095 kb on + strand, within GFF345 at 338.095 kb on + strand, within GFF345 at 338.095 kb on + strand, within GFF345 at 338.095 kb on + strand, within GFF345 at 338.095 kb on + strand, within GFF345 at 338.095 kb on + strand, within GFF345 at 338.103 kb on - strand, within GFF345 at 338.103 kb on - strand, within GFF345 at 338.103 kb on - strand, within GFF345 at 338.105 kb on + strand, within GFF345 at 338.116 kb on + strand, within GFF345 at 338.116 kb on + strand, within GFF345 at 338.116 kb on + strand, within GFF345 at 338.124 kb on - strand, within GFF345 at 338.177 kb on + strand, within GFF345 at 338.208 kb on - strand, within GFF345 at 338.286 kb on + strand at 338.291 kb on + strand at 338.291 kb on + strand at 338.296 kb on + strand at 338.301 kb on + strand at 338.378 kb on + strand at 338.378 kb on + strand at 338.378 kb on + strand at 338.386 kb on - strand at 338.409 kb on + strand at 338.417 kb on - strand at 338.420 kb on + strand at 338.449 kb on - strand, within GFF346 at 338.534 kb on + strand, within GFF346 at 338.534 kb on + strand, within GFF346 at 338.543 kb on - strand, within GFF346 at 338.597 kb on - strand, within GFF346 at 338.691 kb on - strand, within GFF346 at 338.711 kb on - strand, within GFF346 at 338.763 kb on + strand, within GFF346 at 338.805 kb on + strand, within GFF346 at 338.805 kb on + strand, within GFF346 at 338.810 kb on + strand, within GFF346 at 338.810 kb on + strand, within GFF346 at 338.810 kb on + strand, within GFF346 at 338.810 kb on + strand, within GFF346 at 338.810 kb on + strand, within GFF346 at 338.810 kb on + strand, within GFF346 at 338.810 kb on + strand, within GFF346 at 338.810 kb on + strand, within GFF346 at 338.813 kb on - strand, within GFF346 at 338.813 kb on - strand, within GFF346 at 338.813 kb on - strand, within GFF346 at 338.813 kb on - strand, within GFF346 at 338.818 kb on - strand, within GFF346 at 338.818 kb on - strand, within GFF346 at 338.837 kb on - strand, within GFF346 at 338.876 kb on + strand, within GFF346 at 338.884 kb on - strand, within GFF346 at 338.884 kb on - strand, within GFF346 at 338.893 kb on + strand, within GFF346 at 338.893 kb on + strand, within GFF346 at 338.893 kb on + strand, within GFF346 at 338.901 kb on - strand, within GFF346 at 338.901 kb on - strand, within GFF346 at 338.907 kb on + strand, within GFF346 at 338.907 kb on + strand, within GFF346 at 338.907 kb on + strand, within GFF346 at 338.911 kb on - strand, within GFF346 at 338.915 kb on - strand, within GFF346 at 338.915 kb on - strand, within GFF346 at 338.915 kb on - strand, within GFF346 at 338.915 kb on - strand, within GFF346 at 338.917 kb on + strand, within GFF346 at 338.917 kb on + strand, within GFF346 at 338.934 kb on - strand, within GFF346 at 338.964 kb on + strand at 339.015 kb on + strand at 339.016 kb on - strand at 339.026 kb on + strand at 339.026 kb on - strand at 339.031 kb on + strand at 339.031 kb on + strand at 339.031 kb on + strand at 339.058 kb on - strand at 339.059 kb on - strand at 339.061 kb on + strand at 339.081 kb on - strand, within GFF347 at 339.086 kb on + strand, within GFF347 at 339.086 kb on + strand, within GFF347 at 339.132 kb on - strand, within GFF347 at 339.138 kb on + strand, within GFF347 at 339.148 kb on - strand, within GFF347 at 339.162 kb on + strand, within GFF347 at 339.164 kb on + strand, within GFF347 at 339.164 kb on + strand, within GFF347 at 339.164 kb on + strand, within GFF347 at 339.172 kb on - strand, within GFF347 at 339.172 kb on - strand, within GFF347 at 339.172 kb on - strand, within GFF347 at 339.182 kb on - strand, within GFF347 at 339.182 kb on - strand, within GFF347 at 339.204 kb on - strand, within GFF347 at 339.204 kb on - strand, within GFF347 at 339.204 kb on - strand, within GFF347 at 339.204 kb on - strand, within GFF347 at 339.204 kb on - strand, within GFF347 at 339.295 kb on - strand, within GFF347 at 339.295 kb on - strand, within GFF347 at 339.295 kb on - strand, within GFF347 at 339.295 kb on - strand, within GFF347 at 339.322 kb on + strand, within GFF347 at 339.332 kb on - strand, within GFF347 at 339.366 kb on + strand, within GFF347 at 339.433 kb on + strand, within GFF347 at 339.512 kb on - strand, within GFF347 at 339.522 kb on + strand, within GFF347 at 339.565 kb on - strand, within GFF347 at 339.587 kb on - strand, within GFF347 at 339.599 kb on + strand, within GFF347 at 339.610 kb on + strand, within GFF347 at 339.652 kb on + strand at 339.656 kb on - strand at 339.692 kb on - strand at 339.703 kb on + strand at 339.792 kb on + strand at 339.794 kb on + strand at 339.794 kb on + strand at 339.800 kb on - strand at 339.802 kb on - strand at 339.809 kb on + strand at 339.821 kb on + strand at 339.836 kb on + strand at 339.836 kb on + strand at 339.836 kb on + strand at 339.836 kb on + strand at 339.844 kb on - strand at 339.844 kb on - strand at 339.844 kb on - strand at 339.844 kb on - strand at 339.875 kb on - strand at 339.910 kb on + strand at 339.915 kb on + strand, within GFF348 at 339.953 kb on + strand, within GFF348
Per-strain Table
Position Strand Gene LocusTag Fraction EMM_noCarbon with D-Glucose and Ammonium Sulfate remove 337,375 - +0.3 337,375 - -1.1 337,375 - +0.3 337,378 + -0.9 337,412 - +0.7 337,416 + -0.1 337,436 + +0.7 337,436 + -1.3 337,436 + -0.1 337,444 - +0.5 337,595 + -0.8 337,595 + -0.4 337,624 - -0.8 337,634 + GFF345 0.11 +0.7 337,634 + GFF345 0.11 -0.1 337,642 - GFF345 0.12 -0.1 337,642 - GFF345 0.12 +0.4 337,642 - GFF345 0.12 -0.7 337,642 - GFF345 0.12 -0.5 337,645 + GFF345 0.12 +0.5 337,685 - GFF345 0.17 +0.1 337,703 - GFF345 0.20 +1.9 337,710 + GFF345 0.21 -0.4 337,716 + GFF345 0.21 +1.7 337,731 + GFF345 0.23 -2.4 337,731 + GFF345 0.23 -0.4 337,731 + GFF345 0.23 +0.4 337,739 - GFF345 0.24 -0.3 337,739 - GFF345 0.24 +0.4 337,739 - GFF345 0.24 -1.1 337,739 - GFF345 0.24 +0.7 337,739 - GFF345 0.24 -0.9 337,739 - GFF345 0.24 -0.6 337,739 - GFF345 0.24 +0.3 337,758 - GFF345 0.27 -0.1 337,763 - GFF345 0.27 -0.8 337,769 + GFF345 0.28 +0.0 337,777 - GFF345 0.29 +0.1 337,786 + GFF345 0.30 +0.7 337,786 + GFF345 0.30 -0.6 337,827 - GFF345 0.35 -1.5 337,830 + GFF345 0.36 +0.5 337,875 + GFF345 0.42 -0.6 337,885 + GFF345 0.43 +0.7 337,951 + GFF345 0.51 +1.2 337,951 + GFF345 0.51 -1.0 337,964 - GFF345 0.53 -1.5 337,990 - GFF345 0.56 +0.6 338,077 + GFF345 0.67 -0.7 338,094 + GFF345 0.69 -0.6 338,095 + GFF345 0.70 +0.1 338,095 + GFF345 0.70 -1.2 338,095 + GFF345 0.70 +1.7 338,095 + GFF345 0.70 +0.5 338,095 + GFF345 0.70 +0.1 338,095 + GFF345 0.70 -0.0 338,103 - GFF345 0.71 +1.2 338,103 - GFF345 0.71 +0.1 338,103 - GFF345 0.71 -0.1 338,105 + GFF345 0.71 -0.5 338,116 + GFF345 0.72 +0.2 338,116 + GFF345 0.72 +0.6 338,116 + GFF345 0.72 +0.7 338,124 - GFF345 0.73 -3.0 338,177 + GFF345 0.80 +0.6 338,208 - GFF345 0.84 -0.1 338,286 + -0.0 338,291 + -0.1 338,291 + -0.8 338,296 + -0.2 338,301 + +1.2 338,378 + -0.9 338,378 + +1.6 338,378 + -1.4 338,386 - -0.4 338,409 + +1.7 338,417 - +0.5 338,420 + -0.0 338,449 - GFF346 0.12 -1.1 338,534 + GFF346 0.25 -1.8 338,534 + GFF346 0.25 -0.6 338,543 - GFF346 0.26 -2.6 338,597 - GFF346 0.35 +0.3 338,691 - GFF346 0.49 -0.4 338,711 - GFF346 0.52 -0.7 338,763 + GFF346 0.60 +0.1 338,805 + GFF346 0.67 -0.2 338,805 + GFF346 0.67 -0.4 338,810 + GFF346 0.67 -0.8 338,810 + GFF346 0.67 +0.5 338,810 + GFF346 0.67 +0.2 338,810 + GFF346 0.67 -2.6 338,810 + GFF346 0.67 +0.3 338,810 + GFF346 0.67 -1.1 338,810 + GFF346 0.67 +0.0 338,810 + GFF346 0.67 +0.2 338,813 - GFF346 0.68 +1.0 338,813 - GFF346 0.68 -1.1 338,813 - GFF346 0.68 -2.0 338,813 - GFF346 0.68 +0.3 338,818 - GFF346 0.69 -0.8 338,818 - GFF346 0.69 -1.3 338,837 - GFF346 0.72 -1.9 338,876 + GFF346 0.78 +0.3 338,884 - GFF346 0.79 +1.4 338,884 - GFF346 0.79 -0.6 338,893 + GFF346 0.80 -0.0 338,893 + GFF346 0.80 -0.7 338,893 + GFF346 0.80 -0.4 338,901 - GFF346 0.81 -0.8 338,901 - GFF346 0.81 +0.1 338,907 + GFF346 0.82 +0.5 338,907 + GFF346 0.82 -0.6 338,907 + GFF346 0.82 +1.1 338,911 - GFF346 0.83 +0.2 338,915 - GFF346 0.84 +0.2 338,915 - GFF346 0.84 +0.2 338,915 - GFF346 0.84 -0.7 338,915 - GFF346 0.84 +1.2 338,917 + GFF346 0.84 +1.9 338,917 + GFF346 0.84 -0.5 338,934 - GFF346 0.87 +0.4 338,964 + +0.8 339,015 + +0.0 339,016 - -1.7 339,026 + -1.0 339,026 - +0.2 339,031 + -0.8 339,031 + -0.5 339,031 + -0.9 339,058 - -1.5 339,059 - -0.7 339,061 + -1.7 339,081 - GFF347 0.10 +0.7 339,086 + GFF347 0.11 -0.1 339,086 + GFF347 0.11 +0.8 339,132 - GFF347 0.17 +0.2 339,138 + GFF347 0.18 +1.8 339,148 - GFF347 0.20 -0.7 339,162 + GFF347 0.22 -1.1 339,164 + GFF347 0.22 +0.5 339,164 + GFF347 0.22 -0.3 339,164 + GFF347 0.22 -0.2 339,172 - GFF347 0.23 +0.2 339,172 - GFF347 0.23 -1.2 339,172 - GFF347 0.23 +0.5 339,182 - GFF347 0.25 -0.6 339,182 - GFF347 0.25 -0.1 339,204 - GFF347 0.28 +0.7 339,204 - GFF347 0.28 -0.6 339,204 - GFF347 0.28 +0.2 339,204 - GFF347 0.28 -0.1 339,204 - GFF347 0.28 -1.2 339,295 - GFF347 0.41 -1.5 339,295 - GFF347 0.41 +1.4 339,295 - GFF347 0.41 -0.6 339,295 - GFF347 0.41 -0.7 339,322 + GFF347 0.44 -0.1 339,332 - GFF347 0.46 +0.9 339,366 + GFF347 0.51 -0.1 339,433 + GFF347 0.60 -0.9 339,512 - GFF347 0.72 -1.6 339,522 + GFF347 0.73 +0.7 339,565 - GFF347 0.79 +0.2 339,587 - GFF347 0.82 -2.2 339,599 + GFF347 0.84 -0.8 339,610 + GFF347 0.85 +0.5 339,652 + +0.9 339,656 - -0.4 339,692 - -0.4 339,703 + +0.3 339,792 + -0.2 339,794 + +0.5 339,794 + -0.7 339,800 - +1.1 339,802 - +0.7 339,809 + -0.4 339,821 + +0.9 339,836 + -0.5 339,836 + +0.2 339,836 + +0.8 339,836 + -1.3 339,844 - -0.8 339,844 - +0.8 339,844 - +0.4 339,844 - -1.7 339,875 - -0.4 339,910 + -1.6 339,915 + GFF348 0.10 -1.5 339,953 + GFF348 0.13 -0.5
Or see this region's nucleotide sequence