Strain Fitness in Sphingobium sp. HT1-2 around GFF3401

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
3,445,735	+		GFF3400	0.40	+1.1
3,445,737	+		GFF3400	0.40	-0.8
3,445,752	-		GFF3400	0.41	-0.5
3,445,800	-		GFF3400	0.46	+1.2
3,445,805	-		GFF3400	0.46	-0.6
3,445,813	+		GFF3400	0.47	-1.4
3,445,813	+		GFF3400	0.47	+1.8
3,445,813	+		GFF3400	0.47	+0.9
3,445,821	-		GFF3400	0.48	-1.2
3,445,821	-		GFF3400	0.48	+0.3
3,445,821	-		GFF3400	0.48	+0.9
3,445,821	-		GFF3400	0.48	+1.1
3,445,821	-		GFF3400	0.48	+0.4
3,445,821	-		GFF3400	0.48	+1.5
3,445,821	-		GFF3400	0.48	-0.4
3,445,821	-		GFF3400	0.48	+0.0
3,445,823	+		GFF3400	0.48	-0.7
3,445,833	+		GFF3400	0.49	-0.4
3,445,841	-		GFF3400	0.49	+2.2
3,445,847	+		GFF3400	0.50	+0.6
3,445,848	+		GFF3400	0.50	-0.0
3,445,848	+		GFF3400	0.50	-2.4
3,445,855	+		GFF3400	0.51	+0.8
3,445,893	+		GFF3400	0.54	-1.6
3,445,907	-		GFF3400	0.55	-0.1
3,445,935	+		GFF3400	0.58	-2.1
3,445,943	-		GFF3400	0.58	-0.4
3,445,961	+		GFF3400	0.60	+0.0
3,445,989	+		GFF3400	0.62	-0.6
3,446,018	+		GFF3400	0.65	-0.1
3,446,026	-		GFF3400	0.66	+0.6
3,446,028	+		GFF3400	0.66	+2.7
3,446,028	+		GFF3400	0.66	-0.1
3,446,036	-		GFF3400	0.66	-0.0
3,446,036	-		GFF3400	0.66	+0.7
3,446,038	+		GFF3400	0.67	+1.2
3,446,048	-		GFF3400	0.68	+1.0
3,446,063	+		GFF3400	0.69	+1.3
3,446,087	+		GFF3400	0.71	-0.4
3,446,095	-		GFF3400	0.72	-1.6
3,446,097	+		GFF3400	0.72	-0.8
3,446,102	+		GFF3400	0.72	-0.7
3,446,107	+		GFF3400	0.73	+0.5
3,446,128	+		GFF3400	0.75	+1.2
3,446,128	+		GFF3400	0.75	-0.1
3,446,133	+		GFF3400	0.75	+1.3
3,446,133	+		GFF3400	0.75	-0.3
3,446,133	+		GFF3400	0.75	+1.0
3,446,133	+		GFF3400	0.75	-0.3
3,446,136	-		GFF3400	0.75	-1.5
3,446,136	-		GFF3400	0.75	+1.1
3,446,141	-		GFF3400	0.76	+0.0
3,446,210	+		GFF3400	0.82	-2.1
3,446,210	+		GFF3400	0.82	-0.4
3,446,210	+		GFF3400	0.82	+1.2
3,446,215	+		GFF3400	0.82	+0.8
3,446,215	+		GFF3400	0.82	-0.0
3,446,215	+		GFF3400	0.82	+0.4
3,446,218	-		GFF3400	0.83	-0.1
3,446,223	-		GFF3400	0.83	+1.1
3,446,223	-		GFF3400	0.83	+0.3
3,446,234	+		GFF3400	0.84	-0.0
3,446,234	+		GFF3400	0.84	-0.0
3,446,235	-		GFF3400	0.84	+0.0
3,446,257	+		GFF3400	0.86	+1.4
3,446,257	+		GFF3400	0.86	+0.9
3,446,265	-		GFF3400	0.87	-0.4
3,446,274	-		GFF3400	0.87	-0.2
3,446,277	+		GFF3400	0.88	-1.5
3,446,311	-				+0.2
3,446,311	-				-0.2
3,446,321	+				+1.2
3,446,327	-				+1.5
3,446,337	-				+0.9
3,446,359	+				-0.4
3,446,359	+				+2.2
3,446,359	+				+0.5
3,446,362	-				-0.3
3,446,367	-				-1.4
3,446,369	+				+1.0
3,446,377	-				+0.7
3,446,429	-				-0.0
3,446,431	+				-0.2
3,446,439	-				-1.8
3,446,439	-				+0.8
3,446,441	+				+0.8
3,446,449	-				+1.9
3,446,458	-				+0.4
3,446,500	-				+0.0
3,446,500	-				-0.2
3,446,518	+				+0.2
3,446,518	+				+1.4
3,446,518	+				+1.2
3,446,518	+				+0.5
3,446,519	+				+0.7
3,446,593	-				+0.0
3,446,598	+				-0.9
3,446,598	+				+1.8
3,446,598	+				+1.1
3,446,598	+				+0.4
3,446,606	-				-0.7
3,446,606	-				+0.5
3,446,606	-				+2.0
3,446,606	-				-1.5
3,446,607	+				+0.3
3,446,608	+				+1.9
3,446,616	-				+0.7
3,446,618	+				+1.1
3,446,622	-				+0.5
3,446,626	-				+0.1
3,446,626	-				+0.1
3,446,626	-				+0.3
3,446,627	+				-1.6
3,446,652	+				-1.0
3,446,652	+				-1.9
3,446,660	-				+1.1
3,446,660	-				-0.5
3,446,665	+				+0.6
3,446,665	+				+0.8
3,446,729	+				+0.5
3,446,739	+				+0.7
3,446,756	+				+0.5
3,446,761	+				+0.6
3,446,761	+				+0.1
3,446,766	+				+1.6
3,446,769	-				+1.6
3,446,769	-				+0.8
3,446,776	+				+0.2
3,446,776	+				+0.4
3,446,776	+				+0.8
3,446,784	-				+0.5
3,446,806	-				+0.7
3,446,812	+				+0.1
3,446,836	-		GFF3401	0.12	+0.1
3,446,862	-		GFF3401	0.15	+1.3
3,446,889	+		GFF3401	0.18	-1.5
3,446,889	+		GFF3401	0.18	+1.3
3,446,897	-		GFF3401	0.19	+0.2
3,446,917	-		GFF3401	0.21	+1.1
3,446,962	+		GFF3401	0.27	+1.0
3,446,970	-		GFF3401	0.28	-0.8
3,446,982	+		GFF3401	0.29	+0.5
3,446,982	+		GFF3401	0.29	+1.6
3,446,990	-		GFF3401	0.30	+0.5
3,447,027	-		GFF3401	0.34	-1.5
3,447,042	+		GFF3401	0.36	+0.7
3,447,042	+		GFF3401	0.36	-0.4
3,447,047	+		GFF3401	0.36	+0.2
3,447,050	-		GFF3401	0.37	+0.1
3,447,098	+		GFF3401	0.42	-0.3
3,447,101	+		GFF3401	0.43	-0.0
3,447,103	+		GFF3401	0.43	+0.1
3,447,103	+		GFF3401	0.43	+1.8
3,447,164	+		GFF3401	0.50	-1.6
3,447,165	+		GFF3401	0.50	-0.4
3,447,177	+		GFF3401	0.52	+0.2
3,447,180	-		GFF3401	0.52	-0.3
3,447,202	-		GFF3401	0.55	-0.5
3,447,215	+		GFF3401	0.56	-0.1
3,447,236	+		GFF3401	0.59	+1.6
3,447,236	+		GFF3401	0.59	+0.1
3,447,264	+		GFF3401	0.62	+0.3
3,447,268	+		GFF3401	0.62	+0.7
3,447,268	+		GFF3401	0.62	+0.1
3,447,268	+		GFF3401	0.62	-0.1
3,447,333	-		GFF3401	0.70	+0.3
3,447,334	+		GFF3401	0.70	-2.1
3,447,334	+		GFF3401	0.70	+1.2
3,447,335	-		GFF3401	0.70	+0.8
3,447,336	-		GFF3401	0.70	+1.3
3,447,342	-		GFF3401	0.71	+0.4
3,447,342	-		GFF3401	0.71	+1.4
3,447,342	-		GFF3401	0.71	-0.3
3,447,345	+		GFF3401	0.71	-0.6
3,447,352	-		GFF3401	0.72	+0.5
3,447,367	-		GFF3401	0.74	-1.1
3,447,393	-		GFF3401	0.77	+0.1
3,447,401	+		GFF3401	0.78	-0.1
3,447,406	+		GFF3401	0.78	-0.1
3,447,406	+		GFF3401	0.78	-0.2
3,447,406	+		GFF3401	0.78	+0.6
3,447,406	+		GFF3401	0.78	+1.1
3,447,406	+		GFF3401	0.78	-1.4
3,447,409	-		GFF3401	0.79	+1.0
3,447,414	-		GFF3401	0.79	-0.4
3,447,419	-		GFF3401	0.80	+1.8
3,447,424	+		GFF3401	0.80	+0.3
3,447,427	-		GFF3401	0.81	+0.0
3,447,427	-		GFF3401	0.81	+0.2
3,447,432	-		GFF3401	0.81	-1.7
3,447,452	+		GFF3401	0.84	-0.2
3,447,452	+		GFF3401	0.84	-0.7
3,447,452	+		GFF3401	0.84	-0.5
3,447,453	+		GFF3401	0.84	+1.0
3,447,460	-		GFF3401	0.85	+1.0
3,447,460	-		GFF3401	0.85	+0.2
3,447,468	+		GFF3401	0.86	-0.6
3,447,468	+		GFF3401	0.86	+1.1
3,447,472	-		GFF3401	0.86	+0.3
3,447,474	-		GFF3401	0.86	+0.1
3,447,475	-		GFF3401	0.86	+0.7
3,447,475	-		GFF3401	0.86	+0.5
3,447,490	+		GFF3401	0.88	-0.7
3,447,498	-		GFF3401	0.89	+0.2
3,447,498	-		GFF3401	0.89	+0.6
3,447,498	-		GFF3401	0.89	-1.1
3,447,498	-		GFF3401	0.89	+0.2
3,447,516	+				+0.6
3,447,526	+				-0.1
3,447,526	+				+0.6
3,447,533	+				+1.0
3,447,538	+				+0.6
3,447,559	+				+1.4
3,447,559	+				+0.3
3,447,559	+				+0.5
3,447,559	-				+0.7
3,447,564	+				+1.5
3,447,567	-				+0.9
3,447,567	-				+0.0
3,447,572	+				+0.5
3,447,572	+				+0.8
3,447,572	+				+1.5
3,447,572	+				-1.6
3,447,572	+				+0.6
3,447,572	+				-0.1
3,447,572	+				-0.1
3,447,572	+				+0.7
3,447,572	+				-0.1
3,447,572	+				+0.2
3,447,572	+				+0.1
3,447,572	+				+1.0
3,447,572	+				+0.9
3,447,572	+				+0.1
3,447,572	-				-0.3
3,447,579	-				-1.3
3,447,580	-				+1.3
3,447,580	-				-0.5
3,447,580	-				+0.9
3,447,580	-				-0.7
3,447,580	-				+0.2
3,447,580	-				+0.2
3,447,580	-				-0.4
3,447,580	-				-0.3
3,447,580	-				+0.2
3,447,595	-				+0.8
3,447,595	-				+0.1
3,447,612	+				+0.3
3,447,620	-				+1.5
3,447,620	-				+0.8
3,447,654	-				+0.8
3,447,718	-				-0.4
3,447,742	+				-0.6
3,447,747	+				+0.8
3,447,750	-				+0.4
3,447,758	+				-1.0
3,447,758	+				+0.2
3,447,758	+				+1.5
3,447,766	-				+2.0
3,447,774	-				+0.4
3,447,823	+				-0.9
3,447,837	+				-0.6
3,447,855	+				+1.0
3,447,855	+				-1.6
3,447,863	-				+0.8
3,447,863	-				+1.1
3,447,866	+				-1.2
3,447,866	+				-0.1
3,447,874	-				+2.2
3,447,874	-				-0.1
3,447,879	-				-0.2
3,447,885	+				+1.0
3,447,907	+				+0.2
3,447,915	-				-2.3
3,447,937	+				-0.0
3,447,945	-				+1.2
3,447,950	-				+0.2
3,447,967	+				+0.8
3,447,975	+				+1.5
3,447,978	-				+0.5
3,447,980	+				-1.4
3,447,981	+				+0.2
3,447,985	+				+0.0
3,447,988	-				+0.4
3,448,033	+				-0.3
3,448,033	+				+0.7
3,448,036	+				-0.0
3,448,036	-				-2.0
3,448,038	+				+0.1
3,448,041	-				-1.1
3,448,041	-				+0.8
3,448,046	-				+0.1
3,448,048	+				+0.5
3,448,048	+				-0.4
3,448,048	+				+1.0
3,448,071	+				+0.4
3,448,071	+				+1.0
3,448,071	+				+0.6
3,448,079	-				+0.6
3,448,079	-				-2.0
3,448,079	-				+0.7
3,448,079	-				+2.3
3,448,098	+				+0.6
3,448,100	+				+0.6
3,448,108	-				-0.7
3,448,108	-				+0.6
3,448,128	+				+0.8
3,448,133	+				-1.5
3,448,133	+				+0.2
3,448,133	+				+1.1
3,448,133	+				-0.2
3,448,136	-				+0.9
3,448,141	-				+1.2
3,448,141	-				+1.6
3,448,146	-				+1.0
3,448,148	+				+0.2
3,448,156	-				-0.0
3,448,173	+				+0.2
3,448,232	+				+0.9
3,448,270	+				-1.8
3,448,270	+				+0.8
3,448,270	+				+0.3
3,448,270	+				-0.7
3,448,275	+				+1.0
3,448,278	-				+1.0
3,448,278	-				-0.0
3,448,278	-				+0.9
3,448,291	-				+1.2
3,448,306	+				+1.5
3,448,311	+				-1.5
3,448,311	+				-0.4
3,448,311	+				-0.6
3,448,314	-				+1.5
3,448,314	-				-0.1
3,448,317	-				+1.1
3,448,319	-				+0.5
3,448,321	+				-2.3
3,448,321	+				+0.5
3,448,321	+				+0.2
3,448,321	+				+1.7
3,448,321	+				+1.5
3,448,323	+				+0.6
3,448,328	+				+0.5
3,448,328	+				+0.9
3,448,328	+				+0.1
3,448,328	+				+0.7
3,448,328	+				+0.6
3,448,329	-				+1.1
3,448,329	-				-1.5
3,448,329	-				-0.9
3,448,329	-				+1.0
3,448,329	-				+0.9
3,448,329	-				+0.2
3,448,329	-				+1.4
3,448,331	-		GFF3402	0.10	+0.6
3,448,336	-		GFF3402	0.11	+0.0
3,448,341	-		GFF3402	0.11	-1.4
3,448,363	+		GFF3402	0.13	+0.1
3,448,373	+		GFF3402	0.15	-0.4
3,448,373	+		GFF3402	0.15	+0.4
3,448,373	+		GFF3402	0.15	+1.7
3,448,381	-		GFF3402	0.15	-1.1
3,448,386	-		GFF3402	0.16	+1.2
3,448,394	+		GFF3402	0.17	+1.8
3,448,420	+		GFF3402	0.19	+1.1
3,448,437	-		GFF3402	0.21	+0.1
3,448,474	-		GFF3402	0.25	+0.4
3,448,476	-		GFF3402	0.25	-1.2
3,448,484	+		GFF3402	0.26	-0.7
3,448,487	-		GFF3402	0.26	-0.3
3,448,489	+		GFF3402	0.27	-0.8
3,448,492	-		GFF3402	0.27	+0.3
3,448,492	-		GFF3402	0.27	+1.0
3,448,502	-		GFF3402	0.28	-0.7
3,448,512	+		GFF3402	0.29	+0.1
3,448,512	+		GFF3402	0.29	+0.1
3,448,512	+		GFF3402	0.29	+0.2
3,448,512	+		GFF3402	0.29	+0.5
3,448,512	+		GFF3402	0.29	+1.6
3,448,512	+		GFF3402	0.29	+1.3
3,448,520	-		GFF3402	0.30	+0.3
3,448,520	-		GFF3402	0.30	-1.1
3,448,520	-		GFF3402	0.30	+1.9
3,448,530	+		GFF3402	0.31	+1.6
3,448,533	-		GFF3402	0.31	+0.8
3,448,538	-		GFF3402	0.32	+0.4
3,448,553	-		GFF3402	0.33	+0.5
3,448,553	-		GFF3402	0.33	+0.6
3,448,558	+		GFF3402	0.34	+0.3
3,448,558	+		GFF3402	0.34	+0.3
3,448,560	+		GFF3402	0.34	-0.4
3,448,566	-		GFF3402	0.35	+0.5
3,448,566	-		GFF3402	0.35	-1.4
3,448,566	-		GFF3402	0.35	+0.9
3,448,584	-		GFF3402	0.37	+2.0
3,448,587	+		GFF3402	0.37	+0.1
3,448,589	+		GFF3402	0.37	+0.3