Strain Fitness in Sphingobium sp. HT1-2 around GFF3384

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
3,423,067	+				+0.2
3,423,067	+				+0.6
3,423,067	+				-0.6
3,423,075	-				-2.1
3,423,075	-				-0.3
3,423,075	-				+0.3
3,423,075	-				-0.9
3,423,075	-				+1.3
3,423,075	-				-0.1
3,423,075	-				+1.5
3,423,075	-				+0.3
3,423,075	-				+0.9
3,423,089	+		GFF3383	0.11	-0.1
3,423,124	+		GFF3383	0.15	+0.9
3,423,137	-		GFF3383	0.16	-0.1
3,423,161	+		GFF3383	0.19	+0.6
3,423,161	+		GFF3383	0.19	-0.1
3,423,161	+		GFF3383	0.19	+0.0
3,423,201	+		GFF3383	0.23	+1.4
3,423,227	-		GFF3383	0.26	-0.0
3,423,258	-		GFF3383	0.30	-0.5
3,423,263	+		GFF3383	0.30	-0.5
3,423,287	+		GFF3383	0.33	+0.9
3,423,299	-		GFF3383	0.34	+0.2
3,423,301	-		GFF3383	0.34	+0.4
3,423,315	+		GFF3383	0.36	+0.7
3,423,315	+		GFF3383	0.36	-0.3
3,423,315	+		GFF3383	0.36	+0.5
3,423,323	-		GFF3383	0.37	+0.7
3,423,323	-		GFF3383	0.37	+0.9
3,423,323	-		GFF3383	0.37	-0.0
3,423,323	-		GFF3383	0.37	+0.1
3,423,337	+		GFF3383	0.38	+1.2
3,423,337	+		GFF3383	0.38	+0.9
3,423,337	+		GFF3383	0.38	-0.6
3,423,337	+		GFF3383	0.38	-1.5
3,423,337	+		GFF3383	0.38	+1.3
3,423,337	+		GFF3383	0.38	+1.2
3,423,345	-		GFF3383	0.39	+1.2
3,423,345	-		GFF3383	0.39	-0.0
3,423,352	-		GFF3383	0.40	-0.3
3,423,371	+		GFF3383	0.42	+1.0
3,423,377	+		GFF3383	0.43	+0.4
3,423,377	+		GFF3383	0.43	-0.7
3,423,377	+		GFF3383	0.43	+0.4
3,423,377	+		GFF3383	0.43	+1.3
3,423,377	+		GFF3383	0.43	-0.8
3,423,381	-		GFF3383	0.43	-0.5
3,423,385	-		GFF3383	0.44	-0.1
3,423,385	-		GFF3383	0.44	-0.2
3,423,408	+		GFF3383	0.46	+0.7
3,423,416	-		GFF3383	0.47	+0.6
3,423,416	-		GFF3383	0.47	-1.2
3,423,416	-		GFF3383	0.47	+1.4
3,423,416	-		GFF3383	0.47	-1.4
3,423,425	-		GFF3383	0.48	-0.0
3,423,437	+		GFF3383	0.50	-0.5
3,423,443	+		GFF3383	0.50	-1.4
3,423,445	-		GFF3383	0.51	-0.6
3,423,445	-		GFF3383	0.51	+0.0
3,423,447	+		GFF3383	0.51	+0.6
3,423,455	+		GFF3383	0.52	-0.9
3,423,455	-		GFF3383	0.52	+0.7
3,423,455	-		GFF3383	0.52	+1.3
3,423,497	+		GFF3383	0.56	+0.3
3,423,526	+		GFF3383	0.60	-0.5
3,423,537	+		GFF3383	0.61	-1.7
3,423,537	+		GFF3383	0.61	+1.1
3,423,545	-		GFF3383	0.62	+0.7
3,423,545	-		GFF3383	0.62	-0.9
3,423,547	-		GFF3383	0.62	+0.3
3,423,582	-		GFF3383	0.66	+2.0
3,423,583	+		GFF3383	0.66	+1.0
3,423,586	-		GFF3383	0.66	+0.0
3,423,596	-		GFF3383	0.68	+0.5
3,423,596	-		GFF3383	0.68	+0.4
3,423,606	-		GFF3383	0.69	+1.6
3,423,613	-		GFF3383	0.69	+1.2
3,423,618	-		GFF3383	0.70	-0.5
3,423,618	-		GFF3383	0.70	-0.8
3,423,630	+		GFF3383	0.71	-0.8
3,423,633	-		GFF3383	0.72	+0.5
3,423,671	+		GFF3383	0.76	-1.6
3,423,683	+		GFF3383	0.77	+0.6
3,423,686	+		GFF3383	0.78	-1.4
3,423,689	+		GFF3383	0.78	-0.7
3,423,691	-		GFF3383	0.78	+0.6
3,423,693	+		GFF3383	0.78	+0.0
3,423,694	+		GFF3383	0.79	+0.2
3,423,701	-		GFF3383	0.79	+1.0
3,423,702	-		GFF3383	0.79	+0.7
3,423,706	+		GFF3383	0.80	-0.2
3,423,706	+		GFF3383	0.80	-1.5
3,423,714	-		GFF3383	0.81	-1.2
3,423,714	-		GFF3383	0.81	-0.2
3,423,714	-		GFF3383	0.81	+0.5
3,423,714	-		GFF3383	0.81	+1.2
3,423,714	-		GFF3383	0.81	+1.2
3,423,714	-		GFF3383	0.81	+0.2
3,423,721	+		GFF3383	0.82	+1.0
3,423,728	+		GFF3383	0.82	+0.3
3,423,728	+		GFF3383	0.82	+1.1
3,423,728	+		GFF3383	0.82	-0.6
3,423,731	-		GFF3383	0.83	+0.3
3,423,731	-		GFF3383	0.83	-0.0
3,423,736	-		GFF3383	0.83	-0.6
3,423,736	-		GFF3383	0.83	+0.2
3,423,745	+		GFF3383	0.84	+0.6
3,423,745	+		GFF3383	0.84	+1.0
3,423,753	-		GFF3383	0.85	-0.0
3,423,753	-		GFF3383	0.85	+0.8
3,423,760	+		GFF3383	0.86	-1.0
3,423,760	+		GFF3383	0.86	+0.1
3,423,760	+		GFF3383	0.86	+0.5
3,423,760	+		GFF3383	0.86	+0.6
3,423,760	+		GFF3383	0.86	+0.1
3,423,760	+		GFF3383	0.86	+0.0
3,423,768	-		GFF3383	0.87	+1.2
3,423,768	-		GFF3383	0.87	-1.0
3,423,770	+		GFF3383	0.87	+1.2
3,423,787	-		GFF3383	0.89	+0.0
3,423,803	+				-0.9
3,423,806	-				+0.6
3,423,806	-				-0.7
3,423,811	-				-0.3
3,423,811	-				+0.6
3,423,813	+				-0.4
3,423,813	+				-0.0
3,423,813	+				+0.1
3,423,813	+				-0.3
3,423,813	+				-0.8
3,423,813	+				+0.6
3,423,813	+				-1.2
3,423,821	-				+0.1
3,423,821	-				+1.9
3,423,821	-				+0.2
3,423,823	+				+0.7
3,423,831	-				-0.4
3,423,831	-				-0.5
3,423,891	+				+0.4
3,423,899	-				+0.9
3,423,899	-				+0.6
3,423,919	+				+1.1
3,423,919	+				+0.3
3,423,919	+				+1.1
3,423,919	+				+2.8
3,423,925	+				-0.2
3,423,925	+				+0.4
3,423,925	+				+0.6
3,423,927	-				-0.3
3,423,927	-				+0.1
3,423,927	-				+1.3
3,423,927	-				+1.2
3,423,927	-				+0.5
3,423,927	-				-0.4
3,423,927	-				-0.3
3,423,927	-				-0.5
3,423,933	-				-1.9
3,423,937	-				+1.3
3,423,986	+				+0.6
3,423,991	+				+0.7
3,423,991	+				+0.8
3,423,991	+				-1.2
3,423,991	+				-0.2
3,423,991	+				+0.3
3,423,991	+				+0.4
3,423,991	+				+1.0
3,423,994	-				-0.2
3,423,999	-				+0.7
3,423,999	-				+0.9
3,423,999	-				+0.8
3,423,999	-				-0.5
3,423,999	-				-0.0
3,423,999	-				+1.9
3,424,020	+				+0.4
3,424,028	+				+0.2
3,424,028	-				+0.4
3,424,028	-				-0.5
3,424,028	-				-0.9
3,424,097	+				+0.3
3,424,132	-				-0.6
3,424,139	-				+0.5
3,424,169	+		GFF3384	0.12	+0.5
3,424,177	+		GFF3384	0.13	-2.0
3,424,177	-		GFF3384	0.13	-0.8
3,424,185	+		GFF3384	0.14	+0.4
3,424,190	+		GFF3384	0.14	-0.5
3,424,196	-		GFF3384	0.15	+1.1
3,424,217	+		GFF3384	0.17	+0.6
3,424,217	+		GFF3384	0.17	-0.6
3,424,217	+		GFF3384	0.17	+0.8
3,424,217	+		GFF3384	0.17	-0.7
3,424,225	-		GFF3384	0.18	+0.4
3,424,225	-		GFF3384	0.18	+0.9
3,424,225	-		GFF3384	0.18	+1.3
3,424,225	-		GFF3384	0.18	-1.5
3,424,225	-		GFF3384	0.18	+0.8
3,424,225	-		GFF3384	0.18	+1.2
3,424,225	-		GFF3384	0.18	-0.5
3,424,300	+		GFF3384	0.26	+0.5
3,424,300	+		GFF3384	0.26	+1.6
3,424,300	+		GFF3384	0.26	-0.8
3,424,300	+		GFF3384	0.26	-0.3
3,424,300	+		GFF3384	0.26	-0.2
3,424,307	+		GFF3384	0.27	-0.4
3,424,308	-		GFF3384	0.27	+0.0
3,424,308	-		GFF3384	0.27	+1.1
3,424,317	+		GFF3384	0.28	+0.4
3,424,319	+		GFF3384	0.28	+1.4
3,424,319	+		GFF3384	0.28	-0.4
3,424,319	+		GFF3384	0.28	+0.4
3,424,319	+		GFF3384	0.28	+0.9
3,424,319	+		GFF3384	0.28	+1.3
3,424,325	-		GFF3384	0.29	+0.4
3,424,327	-		GFF3384	0.29	-0.3
3,424,327	-		GFF3384	0.29	+0.1
3,424,360	-		GFF3384	0.32	-1.7
3,424,376	+		GFF3384	0.34	+1.3
3,424,376	+		GFF3384	0.34	-0.0
3,424,376	+		GFF3384	0.34	+0.2
3,424,376	+		GFF3384	0.34	+0.2
3,424,376	+		GFF3384	0.34	+1.5
3,424,376	+		GFF3384	0.34	+2.1
3,424,376	+		GFF3384	0.34	+1.1
3,424,376	+		GFF3384	0.34	+0.7
3,424,376	+		GFF3384	0.34	-1.2
3,424,376	+		GFF3384	0.34	+1.2
3,424,376	+		GFF3384	0.34	+0.4
3,424,376	+		GFF3384	0.34	+0.4
3,424,376	+		GFF3384	0.34	+1.3
3,424,376	+		GFF3384	0.34	+0.6
3,424,376	+		GFF3384	0.34	-0.4
3,424,376	+		GFF3384	0.34	+1.1
3,424,376	+		GFF3384	0.34	+1.7
3,424,376	+		GFF3384	0.34	-0.2
3,424,376	+		GFF3384	0.34	+0.8
3,424,376	+		GFF3384	0.34	+0.6
3,424,378	+		GFF3384	0.34	+0.0
3,424,383	+		GFF3384	0.35	-0.1
3,424,384	-		GFF3384	0.35	-1.5
3,424,384	-		GFF3384	0.35	-0.2
3,424,384	-		GFF3384	0.35	-0.4
3,424,384	-		GFF3384	0.35	+0.4
3,424,384	-		GFF3384	0.35	+0.3
3,424,384	-		GFF3384	0.35	+1.6
3,424,384	-		GFF3384	0.35	-0.7
3,424,384	-		GFF3384	0.35	+0.2
3,424,384	-		GFF3384	0.35	+1.7
3,424,384	-		GFF3384	0.35	-1.3
3,424,384	-		GFF3384	0.35	+0.7
3,424,384	-		GFF3384	0.35	+0.2
3,424,384	-		GFF3384	0.35	-0.8
3,424,384	-		GFF3384	0.35	+0.9
3,424,384	-		GFF3384	0.35	+0.8
3,424,404	+		GFF3384	0.37	+0.7
3,424,404	+		GFF3384	0.37	+0.5
3,424,404	+		GFF3384	0.37	+0.2
3,424,412	-		GFF3384	0.38	-0.2
3,424,469	-		GFF3384	0.44	-0.3
3,424,479	+		GFF3384	0.45	-0.5
3,424,501	-		GFF3384	0.47	+0.5
3,424,515	+		GFF3384	0.49	-1.3
3,424,521	-		GFF3384	0.49	+0.4
3,424,530	-		GFF3384	0.50	-0.6
3,424,537	+		GFF3384	0.51	+0.1
3,424,537	+		GFF3384	0.51	-1.0
3,424,540	-		GFF3384	0.51	+0.4
3,424,545	-		GFF3384	0.52	+1.3
3,424,545	-		GFF3384	0.52	+0.3
3,424,559	-		GFF3384	0.53	+0.1
3,424,566	+		GFF3384	0.54	+0.0
3,424,579	+		GFF3384	0.55	+1.3
3,424,597	+		GFF3384	0.57	-0.2
3,424,597	+		GFF3384	0.57	+0.5
3,424,630	+		GFF3384	0.61	+0.2
3,424,670	-		GFF3384	0.65	+0.4
3,424,672	-		GFF3384	0.65	+0.2
3,424,674	+		GFF3384	0.65	+1.1
3,424,677	-		GFF3384	0.66	-0.4
3,424,687	-		GFF3384	0.67	-1.0
3,424,714	+		GFF3384	0.70	+0.5
3,424,715	-		GFF3384	0.70	+1.3
3,424,762	-		GFF3384	0.75	-1.4
3,424,778	+		GFF3384	0.76	+0.7
3,424,778	-		GFF3384	0.76	+0.2
3,424,779	-		GFF3384	0.76	-0.2
3,424,801	+		GFF3384	0.79	+0.0
3,424,801	+		GFF3384	0.79	+0.6
3,424,809	-		GFF3384	0.79	+0.4
3,424,830	+		GFF3384	0.82	+1.0
3,424,837	+		GFF3384	0.82	-1.5
3,424,837	+		GFF3384	0.82	+1.2
3,424,837	+		GFF3384	0.82	+1.2
3,424,848	+		GFF3384	0.84	+0.8
3,424,876	+		GFF3384	0.87	+0.6
3,424,876	-		GFF3384	0.87	-1.1
3,424,956	-				+0.7
3,424,977	+				-0.5
3,425,005	-				+0.7
3,425,006	+				+0.6
3,425,006	+				-0.8
3,425,011	+				+1.7
3,425,058	+				+0.6
3,425,064	+				+0.8
3,425,072	-				-0.8
3,425,089	+				-1.4
3,425,089	+				+1.2
3,425,094	+				+0.9
3,425,094	+				+0.2
3,425,097	-				+0.1
3,425,097	-				-0.2
3,425,097	-				+0.7
3,425,097	-				+1.6
3,425,102	+				-1.8
3,425,104	+				+0.0
3,425,104	+				+0.6
3,425,104	+				+1.0
3,425,112	-				-1.1
3,425,112	-				-1.1
3,425,117	-				-0.0
3,425,130	+				+0.3
3,425,198	+		GFF3385	0.14	+1.3
3,425,201	+		GFF3385	0.14	-0.4
3,425,203	+		GFF3385	0.14	-1.2
3,425,206	+		GFF3385	0.14	+1.1
3,425,206	-		GFF3385	0.14	+0.6
3,425,211	-		GFF3385	0.15	-0.6
3,425,216	+		GFF3385	0.15	-0.2
3,425,221	+		GFF3385	0.15	+0.7
3,425,221	+		GFF3385	0.15	+0.9
3,425,224	-		GFF3385	0.16	-0.1
3,425,226	+		GFF3385	0.16	-0.2
3,425,226	+		GFF3385	0.16	+1.4
3,425,226	+		GFF3385	0.16	-1.8
3,425,226	+		GFF3385	0.16	+0.5
3,425,226	+		GFF3385	0.16	+0.2
3,425,226	+		GFF3385	0.16	+0.6
3,425,226	+		GFF3385	0.16	-0.7
3,425,229	-		GFF3385	0.16	+0.9
3,425,234	-		GFF3385	0.16	-1.6
3,425,234	-		GFF3385	0.16	+1.6
3,425,234	-		GFF3385	0.16	+0.2
3,425,249	+		GFF3385	0.17	+0.7
3,425,253	+		GFF3385	0.18	+0.6
3,425,269	+		GFF3385	0.19	-1.7
3,425,269	+		GFF3385	0.19	+1.3
3,425,280	+		GFF3385	0.20	+0.8
3,425,283	-		GFF3385	0.20	-0.6
3,425,283	-		GFF3385	0.20	+0.8
3,425,346	+		GFF3385	0.24	+0.3
3,425,349	+		GFF3385	0.25	+0.7
3,425,360	-		GFF3385	0.25	+0.4
3,425,372	-		GFF3385	0.26	+0.1
3,425,372	-		GFF3385	0.26	+0.8
3,425,377	+		GFF3385	0.27	+0.3
3,425,406	+		GFF3385	0.29	-1.5
3,425,419	-		GFF3385	0.30	+0.1
3,425,431	-		GFF3385	0.30	-1.7
3,425,445	-		GFF3385	0.31	+0.3
3,425,445	-		GFF3385	0.31	+0.8
3,425,445	-		GFF3385	0.31	+0.4
3,425,445	-		GFF3385	0.31	-0.5
3,425,502	-		GFF3385	0.35	+0.3
3,425,509	+		GFF3385	0.36	-2.1
3,425,536	+		GFF3385	0.38	+1.0
3,425,582	+		GFF3385	0.41	-0.5
3,425,582	+		GFF3385	0.41	-0.9
3,425,582	+		GFF3385	0.41	-1.5
3,425,591	+		GFF3385	0.42	+0.3
3,425,593	+		GFF3385	0.42	+1.4
3,425,654	+		GFF3385	0.46	+1.4
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3,425,657	-		GFF3385	0.47	+0.7
3,425,670	+		GFF3385	0.47	-0.0
3,425,678	-		GFF3385	0.48	+0.6
3,425,679	+		GFF3385	0.48	+0.7
3,425,686	+		GFF3385	0.49	+0.5
3,425,692	+		GFF3385	0.49	-0.0
3,425,692	+		GFF3385	0.49	-0.6
3,425,695	+		GFF3385	0.49	+0.2
3,425,695	+		GFF3385	0.49	+0.2
3,425,695	+		GFF3385	0.49	-0.4
3,425,712	+		GFF3385	0.51	-0.5
3,425,731	+		GFF3385	0.52	-0.6
3,425,731	+		GFF3385	0.52	+0.7
3,425,736	+		GFF3385	0.52	+0.5
3,425,736	+		GFF3385	0.52	+1.4
3,425,736	+		GFF3385	0.52	+0.0
3,425,736	+		GFF3385	0.52	+0.8
3,425,736	+		GFF3385	0.52	-0.8
3,425,736	+		GFF3385	0.52	+1.4
3,425,736	+		GFF3385	0.52	+0.9
3,425,736	+		GFF3385	0.52	+0.1
3,425,736	+		GFF3385	0.52	-1.1
3,425,737	+		GFF3385	0.52	+1.0
3,425,739	-		GFF3385	0.52	+0.7
3,425,739	-		GFF3385	0.52	+0.2
3,425,739	-		GFF3385	0.52	+1.7
3,425,739	-		GFF3385	0.52	+1.3
3,425,739	-		GFF3385	0.52	+0.1
3,425,739	-		GFF3385	0.52	-2.0
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3,425,744	-		GFF3385	0.53	+0.8
3,425,744	-		GFF3385	0.53	-0.3
3,425,769	-		GFF3385	0.55	+0.0
3,425,774	-		GFF3385	0.55	-0.7
3,425,780	-		GFF3385	0.55	+1.0
3,425,793	-		GFF3385	0.56	+0.3
3,425,804	-		GFF3385	0.57	+1.4
3,425,827	-		GFF3385	0.59	-0.6
3,425,835	-		GFF3385	0.59	-0.8
3,425,838	+		GFF3385	0.60	+0.0
3,425,844	+		GFF3385	0.60	+0.2
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3,425,854	+		GFF3385	0.61	+1.2
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3,425,862	-		GFF3385	0.61	-1.1
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3,425,876	+		GFF3385	0.62	+0.2
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3,425,892	+		GFF3385	0.63	+1.0
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3,425,926	-		GFF3385	0.66	+1.0
3,425,927	-		GFF3385	0.66	+1.8
3,425,929	+		GFF3385	0.66	-0.6
3,425,930	+		GFF3385	0.66	-0.5
3,425,930	+		GFF3385	0.66	+0.2
3,425,930	+		GFF3385	0.66	-0.5
3,425,930	+		GFF3385	0.66	-2.5
3,425,930	+		GFF3385	0.66	+0.5
3,425,930	+		GFF3385	0.66	+1.0
3,425,930	+		GFF3385	0.66	-0.4
3,425,930	+		GFF3385	0.66	-0.9
3,425,937	-		GFF3385	0.67	-0.1
3,425,938	-		GFF3385	0.67	+1.8
3,425,940	+		GFF3385	0.67	+1.0
3,425,948	-		GFF3385	0.67	-0.7
3,425,948	-		GFF3385	0.67	+0.3
3,425,968	+		GFF3385	0.69	-0.2