Strain Fitness in Sphingobium sp. HT1-2 around GFF3351

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
3,397,786	-		GFF3348	0.59	+0.2
3,397,809	-		GFF3348	0.61	+0.0
3,397,827	+		GFF3348	0.63	+0.2
3,397,827	+		GFF3348	0.63	-0.8
3,397,827	+		GFF3348	0.63	+1.7
3,397,827	+		GFF3348	0.63	+1.0
3,397,827	+		GFF3348	0.63	+0.1
3,397,828	+		GFF3348	0.63	+1.0
3,397,830	-		GFF3348	0.63	+0.3
3,397,835	-		GFF3348	0.63	-1.9
3,397,835	-		GFF3348	0.63	+0.0
3,397,835	-		GFF3348	0.63	+0.4
3,397,835	-		GFF3348	0.63	-1.5
3,397,835	-		GFF3348	0.63	+0.4
3,397,837	+		GFF3348	0.63	+0.5
3,397,840	-		GFF3348	0.64	-0.1
3,397,845	-		GFF3348	0.64	+1.0
3,397,851	+		GFF3348	0.65	+0.2
3,397,851	+		GFF3348	0.65	+0.7
3,397,851	+		GFF3348	0.65	-0.2
3,397,859	-		GFF3348	0.65	+0.2
3,397,861	+		GFF3348	0.66	-0.6
3,397,884	-		GFF3348	0.68	-2.7
3,397,889	-		GFF3348	0.68	+0.2
3,397,891	-		GFF3348	0.68	-0.5
3,397,893	+		GFF3348	0.68	-1.4
3,397,901	-		GFF3348	0.69	-0.0
3,397,901	-		GFF3348	0.69	-1.2
3,397,901	-		GFF3348	0.69	+0.9
3,397,910	+		GFF3348	0.70	-0.3
3,397,910	+		GFF3348	0.70	-1.0
3,397,911	-		GFF3348	0.70	-0.0
3,397,929	+		GFF3348	0.72	-0.3
3,397,929	+		GFF3348	0.72	-0.3
3,397,929	+		GFF3348	0.72	-0.7
3,397,933	+		GFF3348	0.72	-0.5
3,397,947	+		GFF3348	0.73	-1.0
3,397,955	+		GFF3348	0.74	+0.5
3,397,974	-		GFF3348	0.75	+0.0
3,397,974	-		GFF3348	0.75	-0.2
3,397,976	-		GFF3348	0.76	+0.7
3,397,976	-		GFF3348	0.76	+0.8
3,397,989	+		GFF3348	0.77	+0.0
3,397,989	+		GFF3348	0.77	-2.5
3,397,993	-		GFF3348	0.77	-0.2
3,397,993	-		GFF3348	0.77	+0.1
3,397,997	-		GFF3348	0.78	-1.7
3,398,019	-		GFF3348	0.79	+1.2
3,398,049	+		GFF3348	0.82	-0.4
3,398,049	+		GFF3348	0.82	-1.2
3,398,057	-		GFF3348	0.83	+1.2
3,398,057	-		GFF3348	0.83	+1.3
3,398,100	+		GFF3348	0.87	+1.6
3,398,100	+		GFF3348	0.87	-1.1
3,398,100	+		GFF3348	0.87	-2.2
3,398,126	+		GFF3348	0.89	-1.4
3,398,173	+				-0.7
3,398,173	+				-0.5
3,398,173	+				-0.3
3,398,176	-				-0.0
3,398,200	+				-0.9
3,398,210	+				+0.6
3,398,216	-				-0.7
3,398,240	+				+0.7
3,398,272	-				-1.8
3,398,297	+		GFF3349	0.15	-0.5
3,398,304	+		GFF3349	0.18	+0.6
3,398,305	-		GFF3349	0.18	-0.3
3,398,332	-		GFF3349	0.27	-1.8
3,398,333	-		GFF3349	0.27	-1.7
3,398,354	+		GFF3349	0.34	-0.2
3,398,357	-		GFF3349	0.35	+0.0
3,398,359	+		GFF3349	0.36	-2.3
3,398,359	+		GFF3349	0.36	-1.4
3,398,383	+		GFF3349	0.44	-0.9
3,398,390	+		GFF3349	0.46	+0.3
3,398,396	-		GFF3349	0.48	-1.8
3,398,398	-		GFF3349	0.49	-1.4
3,398,414	-		GFF3349	0.55	-0.6
3,398,414	-		GFF3349	0.55	+0.0
3,398,444	+		GFF3349	0.65	+0.7
3,398,444	+		GFF3349	0.65	+0.1
3,398,444	-		GFF3349	0.65	-1.2
3,398,452	-		GFF3349	0.67	-0.0
3,398,459	-		GFF3349	0.70	-1.3
3,398,466	+		GFF3349	0.72	-1.1
3,398,466	+		GFF3349	0.72	-1.0
3,398,469	-		GFF3349	0.73	+0.2
3,398,469	-		GFF3349	0.73	+0.0
3,398,471	+		GFF3349	0.74	-1.0
3,398,471	+		GFF3349	0.74	-1.6
3,398,471	+		GFF3349	0.74	+0.6
3,398,471	+		GFF3349	0.74	-1.4
3,398,471	+		GFF3349	0.74	+0.1
3,398,474	-		GFF3349	0.75	+0.0
3,398,474	-		GFF3349	0.75	+0.3
3,398,476	+		GFF3349	0.75	+0.8
3,398,476	+		GFF3349	0.75	+0.5
3,398,476	+		GFF3349	0.75	-1.4
3,398,479	-		GFF3349	0.76	+1.6
3,398,483	+		GFF3349	0.78	-0.7
3,398,483	+		GFF3349	0.78	-1.0
3,398,484	-		GFF3349	0.78	-1.0
3,398,484	-		GFF3349	0.78	-0.1
3,398,488	+		GFF3349	0.79	+0.2
3,398,491	-		GFF3349	0.80	-0.3
3,398,491	-		GFF3349	0.80	-0.4
3,398,491	-		GFF3349	0.80	-0.3
3,398,514	+		GFF3349	0.88	-1.3
3,398,514	+		GFF3349	0.88	-1.8
3,398,514	+		GFF3349	0.88	-0.6
3,398,522	-				+0.7
3,398,522	-				-1.3
3,398,522	-				-1.9
3,398,529	+				-1.7
3,398,552	-				+0.4
3,398,558	+				-3.2
3,398,558	-				-1.5
3,398,558	-				-1.1
3,398,576	+				+0.4
3,398,576	+				-0.4
3,398,583	+				-0.8
3,398,583	+				-1.1
3,398,584	-				-0.7
3,398,584	-				+0.3
3,398,616	-				-0.1
3,398,618	-				-1.1
3,398,618	-				+0.3
3,398,659	-		GFF3350	0.18	-2.0
3,398,678	-		GFF3350	0.31	-0.3
3,398,683	+		GFF3350	0.35	+0.9
3,398,696	-		GFF3350	0.44	-0.5
3,398,697	-		GFF3350	0.44	+0.7
3,398,704	+		GFF3350	0.49	-1.3
3,398,717	+		GFF3350	0.58	+1.0
3,398,737	-		GFF3350	0.72	-0.4
3,398,764	-				-0.0
3,398,778	+				+0.2
3,398,778	+				+0.2
3,398,778	+				-0.1
3,398,778	+				+0.9
3,398,778	+				+0.7
3,398,778	+				+0.9
3,398,778	+				+0.0
3,398,778	+				-0.7
3,398,781	-				-0.4
3,398,786	-				-0.2
3,398,786	-				-0.3
3,398,786	-				-0.9
3,398,786	-				-1.5
3,398,786	-				+0.6
3,398,849	+				+0.6
3,398,857	-				-0.5
3,398,859	+				+0.6
3,398,859	+				-0.8
3,398,859	+				+0.0
3,398,862	-				-0.3
3,398,862	-				+1.3
3,398,866	+				+0.4
3,398,867	-				-0.8
3,398,867	-				-0.2
3,398,895	+				+0.0
3,398,914	+		GFF3351	0.10	-1.5
3,398,914	+		GFF3351	0.10	+0.8
3,398,922	-		GFF3351	0.11	-0.1
3,398,947	+		GFF3351	0.13	-0.7
3,398,966	+		GFF3351	0.14	+0.1
3,398,972	+		GFF3351	0.15	-1.0
3,398,973	+		GFF3351	0.15	-0.3
3,398,973	+		GFF3351	0.15	-1.0
3,398,981	-		GFF3351	0.15	-0.4
3,398,982	+		GFF3351	0.15	-0.5
3,398,990	-		GFF3351	0.16	+0.3
3,399,000	-		GFF3351	0.17	-2.3
3,399,008	-		GFF3351	0.17	-0.5
3,399,031	+		GFF3351	0.19	-0.8
3,399,047	+		GFF3351	0.21	-0.6
3,399,047	+		GFF3351	0.21	+0.5
3,399,047	+		GFF3351	0.21	-1.4
3,399,047	+		GFF3351	0.21	-0.1
3,399,055	-		GFF3351	0.21	+0.2
3,399,055	-		GFF3351	0.21	+1.5
3,399,055	-		GFF3351	0.21	-0.5
3,399,055	-		GFF3351	0.21	-0.8
3,399,055	-		GFF3351	0.21	+0.6
3,399,069	+		GFF3351	0.22	+0.2
3,399,073	-		GFF3351	0.23	+1.5
3,399,087	-		GFF3351	0.24	+0.2
3,399,087	-		GFF3351	0.24	-1.1
3,399,106	+		GFF3351	0.25	-1.0
3,399,109	-		GFF3351	0.25	+0.2
3,399,116	+		GFF3351	0.26	+0.5
3,399,116	-		GFF3351	0.26	-2.5
3,399,146	-		GFF3351	0.28	-1.0
3,399,196	+		GFF3351	0.32	+0.8
3,399,196	+		GFF3351	0.32	+0.1
3,399,196	+		GFF3351	0.32	-0.1
3,399,196	+		GFF3351	0.32	-1.0
3,399,196	+		GFF3351	0.32	-1.2
3,399,196	+		GFF3351	0.32	-0.5
3,399,196	+		GFF3351	0.32	+0.6
3,399,196	+		GFF3351	0.32	+1.2
3,399,196	+		GFF3351	0.32	-0.6
3,399,196	+		GFF3351	0.32	-0.4
3,399,196	+		GFF3351	0.32	-0.5
3,399,196	+		GFF3351	0.32	-0.0
3,399,196	+		GFF3351	0.32	-0.0
3,399,196	+		GFF3351	0.32	-0.2
3,399,196	+		GFF3351	0.32	-0.5
3,399,204	-		GFF3351	0.33	+0.3
3,399,204	-		GFF3351	0.33	-0.0
3,399,204	-		GFF3351	0.33	+0.1
3,399,204	-		GFF3351	0.33	-0.9
3,399,204	-		GFF3351	0.33	+0.4
3,399,204	-		GFF3351	0.33	-0.9
3,399,204	-		GFF3351	0.33	+0.3
3,399,204	-		GFF3351	0.33	-0.7
3,399,204	-		GFF3351	0.33	+0.8
3,399,220	+		GFF3351	0.34	-0.3
3,399,242	+		GFF3351	0.36	-0.5
3,399,244	+		GFF3351	0.36	-0.2
3,399,252	-		GFF3351	0.37	-1.0
3,399,252	-		GFF3351	0.37	-2.2
3,399,252	-		GFF3351	0.37	+0.4
3,399,253	-		GFF3351	0.37	+0.5
3,399,273	+		GFF3351	0.38	-1.2
3,399,280	-		GFF3351	0.39	-0.4
3,399,289	+		GFF3351	0.40	-0.0
3,399,294	+		GFF3351	0.40	+0.2
3,399,297	-		GFF3351	0.40	+0.8
3,399,297	-		GFF3351	0.40	-1.1
3,399,318	+		GFF3351	0.42	+0.5
3,399,340	-		GFF3351	0.44	-0.3
3,399,357	+		GFF3351	0.45	-2.0
3,399,360	-		GFF3351	0.45	-2.3
3,399,373	+		GFF3351	0.46	+0.5
3,399,380	+		GFF3351	0.47	-1.8
3,399,396	-		GFF3351	0.48	-1.1
3,399,424	+		GFF3351	0.50	-2.3
3,399,428	-		GFF3351	0.50	-0.7
3,399,444	-		GFF3351	0.52	-1.2
3,399,466	+		GFF3351	0.53	-0.1
3,399,467	-		GFF3351	0.54	-0.2
3,399,467	-		GFF3351	0.54	+2.4
3,399,468	+		GFF3351	0.54	+0.6
3,399,472	-		GFF3351	0.54	-0.7
3,399,476	-		GFF3351	0.54	-0.0
3,399,486	+		GFF3351	0.55	+0.5
3,399,491	+		GFF3351	0.55	+0.0
3,399,494	-		GFF3351	0.56	+0.2
3,399,499	-		GFF3351	0.56	+0.6
3,399,509	-		GFF3351	0.57	-0.4
3,399,517	-		GFF3351	0.57	-1.1
3,399,517	-		GFF3351	0.57	-0.9
3,399,527	+		GFF3351	0.58	-1.5
3,399,527	+		GFF3351	0.58	-1.4
3,399,532	-		GFF3351	0.59	-1.0
3,399,537	+		GFF3351	0.59	+1.2
3,399,545	-		GFF3351	0.60	-0.9
3,399,570	-		GFF3351	0.62	-2.3
3,399,597	+		GFF3351	0.64	+0.4
3,399,597	+		GFF3351	0.64	+1.2
3,399,605	-		GFF3351	0.64	+0.0
3,399,606	-		GFF3351	0.64	-1.0
3,399,610	-		GFF3351	0.65	+0.7
3,399,610	-		GFF3351	0.65	-0.7
3,399,610	-		GFF3351	0.65	-0.4
3,399,616	+		GFF3351	0.65	-0.8
3,399,616	+		GFF3351	0.65	-2.5
3,399,654	+		GFF3351	0.68	-0.2
3,399,658	+		GFF3351	0.69	-1.4
3,399,662	-		GFF3351	0.69	-0.6
3,399,676	-		GFF3351	0.70	-1.5
3,399,677	-		GFF3351	0.70	+0.2
3,399,678	+		GFF3351	0.70	+0.8
3,399,678	+		GFF3351	0.70	+0.1
3,399,686	-		GFF3351	0.71	-1.3
3,399,686	-		GFF3351	0.71	+0.1
3,399,686	-		GFF3351	0.71	-1.2
3,399,686	-		GFF3351	0.71	-1.5
3,399,690	-		GFF3351	0.71	-0.9
3,399,712	+		GFF3351	0.73	-0.6
3,399,712	+		GFF3351	0.73	+0.7
3,399,716	-		GFF3351	0.73	-1.5
3,399,720	-		GFF3351	0.73	-0.1
3,399,742	-		GFF3351	0.75	+0.8
3,399,820	-		GFF3351	0.81	+1.2
3,399,844	-		GFF3351	0.83	-1.5
3,399,846	+		GFF3351	0.83	+0.2
3,399,846	+		GFF3351	0.83	-0.4
3,399,850	+		GFF3351	0.84	+0.0
3,399,858	-		GFF3351	0.84	-1.8
3,399,858	-		GFF3351	0.84	-0.5
3,399,859	-		GFF3351	0.84	-0.1
3,399,883	-		GFF3351	0.86	-0.9
3,399,889	+		GFF3351	0.87	+0.3
3,399,892	-		GFF3351	0.87	+0.5
3,399,898	+		GFF3351	0.87	-0.2
3,399,917	-		GFF3351	0.89	-2.0
3,399,918	+		GFF3351	0.89	+0.2
3,399,923	+		GFF3351	0.89	-1.0
3,399,923	+		GFF3351	0.89	+0.2
3,399,926	-		GFF3351	0.90	+0.9
3,399,926	-		GFF3351	0.90	-2.7
3,399,926	-		GFF3351	0.90	-0.0
3,399,926	-		GFF3351	0.90	-0.2
3,399,926	-		GFF3351	0.90	-0.1
3,399,928	+		GFF3351	0.90	-0.3
3,399,931	-				-0.8
3,399,931	-				-0.9
3,399,931	-				-0.9
3,399,936	+				-0.3
3,399,943	-				-0.5
3,399,944	-				-1.0
3,399,950	-				+0.3
3,399,976	-				-1.9
3,399,984	+				-0.8
3,399,984	+				-2.0
3,400,001	+				-0.4
3,400,003	+				-0.2
3,400,009	-				-1.2
3,400,009	-				-1.5
3,400,011	+				-1.7
3,400,018	+				+0.7
3,400,018	+				-0.0
3,400,026	-				-0.2
3,400,098	-				-1.4
3,400,111	+				-0.1
3,400,112	+				-1.3
3,400,112	+				-1.9
3,400,113	+				-0.0
3,400,113	+				+0.4
3,400,122	+				-0.5
3,400,122	+				-1.0
3,400,130	+				-1.0
3,400,130	-				+0.2
3,400,148	-				-1.5
3,400,149	-				+1.0
3,400,161	+				-2.3
3,400,167	-				+0.1
3,400,174	+				+0.5
3,400,174	+				-1.8
3,400,182	-				+0.8
3,400,182	-				-0.5
3,400,182	-				-0.9
3,400,184	+				-0.7
3,400,184	+				-0.7
3,400,184	+				-2.3
3,400,184	+				+1.0
3,400,184	+				+0.2
3,400,194	+				+0.2
3,400,202	-				+0.3
3,400,206	-				+0.9
3,400,215	-				+0.5
3,400,218	+				+0.1
3,400,228	-				-0.8
3,400,242	+				+0.3
3,400,242	+				-0.2
3,400,261	+				-0.2
3,400,261	+				+0.5
3,400,262	+				+1.4
3,400,265	-				-2.1
3,400,269	-				+1.2
3,400,270	-				-0.3
3,400,280	+				-2.5
3,400,280	+				-0.0
3,400,280	+				+0.2
3,400,280	+				-1.2
3,400,284	+				-0.1
3,400,294	-				-1.0
3,400,310	+				-2.5
3,400,351	+				-0.2
3,400,352	+				+0.2
3,400,359	-				-0.5
3,400,360	-				+0.1
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