Strain Fitness in Sphingobium sp. HT1-2 around GFF3315

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
3,367,053	+				-0.8
3,367,054	+				-0.6
3,367,062	+				+1.2
3,367,070	-				-2.0
3,367,076	-				+1.7
3,367,085	-				-0.1
3,367,086	-				+1.3
3,367,091	+				-1.0
3,367,101	+				-1.3
3,367,101	+				+0.0
3,367,101	+				-1.4
3,367,101	+				-0.7
3,367,101	+				-1.9
3,367,109	-				-0.0
3,367,109	-				-1.9
3,367,109	-				+0.2
3,367,115	+				+0.2
3,367,139	+		GFF3314	0.12	-1.1
3,367,151	+		GFF3314	0.13	-2.1
3,367,156	+		GFF3314	0.14	+0.6
3,367,156	+		GFF3314	0.14	-1.2
3,367,156	+		GFF3314	0.14	+0.2
3,367,156	+		GFF3314	0.14	-0.3
3,367,156	+		GFF3314	0.14	-0.2
3,367,156	+		GFF3314	0.14	+0.5
3,367,156	+		GFF3314	0.14	+0.2
3,367,156	+		GFF3314	0.14	+0.6
3,367,156	+		GFF3314	0.14	-0.4
3,367,156	+		GFF3314	0.14	-1.7
3,367,156	+		GFF3314	0.14	+0.5
3,367,164	-		GFF3314	0.15	-0.6
3,367,164	-		GFF3314	0.15	-0.6
3,367,164	-		GFF3314	0.15	+0.8
3,367,164	-		GFF3314	0.15	-0.9
3,367,164	-		GFF3314	0.15	-0.4
3,367,164	-		GFF3314	0.15	-0.5
3,367,164	-		GFF3314	0.15	+0.8
3,367,164	-		GFF3314	0.15	-1.5
3,367,164	-		GFF3314	0.15	-0.8
3,367,164	-		GFF3314	0.15	-1.8
3,367,164	-		GFF3314	0.15	-0.8
3,367,164	-		GFF3314	0.15	-1.0
3,367,164	-		GFF3314	0.15	-1.3
3,367,165	+		GFF3314	0.15	+0.1
3,367,165	+		GFF3314	0.15	-0.7
3,367,165	+		GFF3314	0.15	-0.4
3,367,197	-		GFF3314	0.20	+0.3
3,367,208	+		GFF3314	0.21	-1.2
3,367,208	+		GFF3314	0.21	+0.3
3,367,210	+		GFF3314	0.22	-2.5
3,367,216	-		GFF3314	0.23	-0.2
3,367,241	+		GFF3314	0.26	-0.8
3,367,251	-		GFF3314	0.28	+0.8
3,367,276	+		GFF3314	0.31	+0.7
3,367,276	+		GFF3314	0.31	-0.1
3,367,276	+		GFF3314	0.31	+0.6
3,367,276	+		GFF3314	0.31	-0.1
3,367,279	-		GFF3314	0.31	-1.3
3,367,281	+		GFF3314	0.32	+0.2
3,367,281	+		GFF3314	0.32	+1.9
3,367,281	+		GFF3314	0.32	+0.9
3,367,281	+		GFF3314	0.32	+0.0
3,367,281	+		GFF3314	0.32	-1.8
3,367,281	+		GFF3314	0.32	-0.7
3,367,281	+		GFF3314	0.32	-2.4
3,367,283	+		GFF3314	0.32	-0.4
3,367,284	-		GFF3314	0.32	-0.5
3,367,289	-		GFF3314	0.33	-0.7
3,367,289	-		GFF3314	0.33	+0.5
3,367,289	-		GFF3314	0.33	-1.4
3,367,289	-		GFF3314	0.33	-3.2
3,367,289	-		GFF3314	0.33	+0.7
3,367,289	-		GFF3314	0.33	-0.1
3,367,291	-		GFF3314	0.33	-1.7
3,367,317	+		GFF3314	0.37	+0.6
3,367,325	+		GFF3314	0.38	+0.1
3,367,325	+		GFF3314	0.38	-1.9
3,367,325	+		GFF3314	0.38	+0.6
3,367,330	+		GFF3314	0.39	+0.1
3,367,330	+		GFF3314	0.39	-1.6
3,367,333	-		GFF3314	0.39	-0.2
3,367,333	-		GFF3314	0.39	+0.9
3,367,333	-		GFF3314	0.39	+0.6
3,367,333	-		GFF3314	0.39	+0.5
3,367,335	+		GFF3314	0.39	+0.9
3,367,338	-		GFF3314	0.40	-2.7
3,367,338	-		GFF3314	0.40	+0.0
3,367,338	-		GFF3314	0.40	+0.2
3,367,338	-		GFF3314	0.40	-1.3
3,367,338	-		GFF3314	0.40	-2.0
3,367,342	-		GFF3314	0.40	-0.9
3,367,343	-		GFF3314	0.41	-0.8
3,367,349	+		GFF3314	0.41	-0.3
3,367,357	-		GFF3314	0.43	+0.6
3,367,363	+		GFF3314	0.43	-0.2
3,367,370	-		GFF3314	0.44	-0.0
3,367,377	+		GFF3314	0.45	+0.3
3,367,391	+		GFF3314	0.47	-1.0
3,367,391	+		GFF3314	0.47	-0.4
3,367,391	+		GFF3314	0.47	-1.4
3,367,399	-		GFF3314	0.49	-0.8
3,367,401	+		GFF3314	0.49	-1.0
3,367,409	-		GFF3314	0.50	-1.1
3,367,409	-		GFF3314	0.50	-0.2
3,367,409	-		GFF3314	0.50	-0.3
3,367,409	-		GFF3314	0.50	-1.3
3,367,420	-		GFF3314	0.51	-0.3
3,367,425	-		GFF3314	0.52	-0.3
3,367,434	+		GFF3314	0.53	+0.7
3,367,449	-		GFF3314	0.56	+0.4
3,367,456	-		GFF3314	0.57	+0.2
3,367,463	+		GFF3314	0.58	-0.6
3,367,463	+		GFF3314	0.58	-0.0
3,367,471	-		GFF3314	0.59	-0.1
3,367,471	-		GFF3314	0.59	+0.9
3,367,471	-		GFF3314	0.59	-1.9
3,367,475	+		GFF3314	0.59	-2.0
3,367,480	+		GFF3314	0.60	-0.7
3,367,482	+		GFF3314	0.60	-1.2
3,367,482	+		GFF3314	0.60	+0.2
3,367,490	+		GFF3314	0.61	-0.2
3,367,490	+		GFF3314	0.61	-1.5
3,367,490	+		GFF3314	0.61	+1.6
3,367,490	+		GFF3314	0.61	-0.8
3,367,495	+		GFF3314	0.62	-0.5
3,367,504	-		GFF3314	0.63	-0.5
3,367,569	+		GFF3314	0.73	-1.5
3,367,569	+		GFF3314	0.73	+1.2
3,367,619	+		GFF3314	0.80	-2.2
3,367,619	+		GFF3314	0.80	-1.8
3,367,619	+		GFF3314	0.80	-0.7
3,367,627	-		GFF3314	0.81	+0.2
3,367,627	-		GFF3314	0.81	-0.3
3,367,665	+		GFF3314	0.86	-1.1
3,367,717	-				+0.3
3,367,719	+				-2.0
3,367,719	+				+0.5
3,367,727	-				+2.1
3,367,754	+				-0.4
3,367,769	+				-0.1
3,367,772	-				-2.3
3,367,775	+				-1.5
3,367,815	-		GFF3315	0.13	+1.2
3,367,852	+		GFF3315	0.20	-0.0
3,367,907	-		GFF3315	0.32	-0.7
3,367,916	+		GFF3315	0.33	-1.3
3,367,951	+		GFF3315	0.40	+0.3
3,367,980	+		GFF3315	0.46	-0.4
3,367,997	-		GFF3315	0.50	+0.1
3,367,997	-		GFF3315	0.50	-0.8
3,368,002	-		GFF3315	0.51	-0.4
3,368,023	-		GFF3315	0.55	+0.7
3,368,025	+		GFF3315	0.55	-2.5
3,368,030	+		GFF3315	0.56	+0.9
3,368,030	+		GFF3315	0.56	-2.4
3,368,030	-		GFF3315	0.56	-0.9
3,368,033	-		GFF3315	0.57	-0.0
3,368,033	-		GFF3315	0.57	-0.3
3,368,038	-		GFF3315	0.58	+0.4
3,368,078	+		GFF3315	0.66	-1.4
3,368,078	+		GFF3315	0.66	-1.9
3,368,082	+		GFF3315	0.67	-1.0
3,368,142	+		GFF3315	0.79	-0.6
3,368,142	+		GFF3315	0.79	-1.0
3,368,155	+		GFF3315	0.82	-1.5
3,368,163	-		GFF3315	0.83	-0.9
3,368,176	+		GFF3315	0.86	-0.5
3,368,176	+		GFF3315	0.86	+0.9
3,368,176	+		GFF3315	0.86	-0.5
3,368,176	+		GFF3315	0.86	+0.2
3,368,176	+		GFF3315	0.86	-0.5
3,368,184	-		GFF3315	0.87	-1.6
3,368,184	-		GFF3315	0.87	+0.3
3,368,184	-		GFF3315	0.87	+1.0
3,368,184	-		GFF3315	0.87	-0.4
3,368,196	+				-1.2
3,368,204	-				-0.5
3,368,309	+				-0.5
3,368,319	-				-2.2
3,368,319	-				+0.1
3,368,319	-				-0.5
3,368,325	+				-1.5
3,368,342	+				+0.1
3,368,342	+				-1.0
3,368,342	+				-1.4
3,368,350	-				-0.2
3,368,350	-				-1.5
3,368,350	-				-0.1
3,368,378	+				+0.6
3,368,386	-				-1.2
3,368,396	+				-0.4
3,368,411	+				-1.5
3,368,421	-				-2.2
3,368,428	+				-2.7
3,368,476	-				+1.1
3,368,476	-				-1.5
3,368,501	+				-2.3
3,368,542	-		GFF3316	0.11	-0.4
3,368,547	+		GFF3316	0.12	+1.5
3,368,547	-		GFF3316	0.12	-0.1
3,368,552	+		GFF3316	0.12	-1.1
3,368,565	+		GFF3316	0.14	+0.9
3,368,584	+		GFF3316	0.16	-0.5
3,368,584	+		GFF3316	0.16	-0.8
3,368,584	+		GFF3316	0.16	+0.5
3,368,584	+		GFF3316	0.16	-1.7
3,368,592	-		GFF3316	0.17	-1.0
3,368,592	-		GFF3316	0.17	-0.8
3,368,592	-		GFF3316	0.17	-2.9
3,368,592	-		GFF3316	0.17	-0.4
3,368,597	-		GFF3316	0.17	-0.7
3,368,666	+		GFF3316	0.25	-1.9
3,368,666	+		GFF3316	0.25	+0.3
3,368,666	+		GFF3316	0.25	-0.8
3,368,669	-		GFF3316	0.26	-0.6
3,368,669	-		GFF3316	0.26	+0.3
3,368,671	+		GFF3316	0.26	+0.3
3,368,671	+		GFF3316	0.26	-1.2
3,368,674	-		GFF3316	0.26	-0.5
3,368,676	+		GFF3316	0.26	-1.0
3,368,679	-		GFF3316	0.27	-0.2
3,368,683	+		GFF3316	0.27	+0.2
3,368,683	-		GFF3316	0.27	-1.4
3,368,684	+		GFF3316	0.27	+0.5
3,368,684	+		GFF3316	0.27	-1.6
3,368,684	+		GFF3316	0.27	+0.2
3,368,684	-		GFF3316	0.27	-0.9
3,368,690	+		GFF3316	0.28	+0.8
3,368,692	-		GFF3316	0.28	+0.3
3,368,692	-		GFF3316	0.28	+0.1
3,368,692	-		GFF3316	0.28	-0.3
3,368,692	-		GFF3316	0.28	-0.5
3,368,692	-		GFF3316	0.28	-1.8
3,368,692	-		GFF3316	0.28	+0.6
3,368,712	+		GFF3316	0.30	-1.0
3,368,715	-		GFF3316	0.31	-1.0
3,368,716	+		GFF3316	0.31	+0.5
3,368,721	+		GFF3316	0.32	-0.5
3,368,721	+		GFF3316	0.32	+0.9
3,368,724	-		GFF3316	0.32	+0.3
3,368,753	+		GFF3316	0.35	-2.3
3,368,753	+		GFF3316	0.35	-2.0
3,368,753	+		GFF3316	0.35	-1.2
3,368,753	+		GFF3316	0.35	+0.9
3,368,753	+		GFF3316	0.35	+1.4
3,368,753	+		GFF3316	0.35	-0.8
3,368,753	+		GFF3316	0.35	+0.1
3,368,753	+		GFF3316	0.35	+1.6
3,368,755	+		GFF3316	0.35	-0.1
3,368,761	-		GFF3316	0.36	+0.3
3,368,761	-		GFF3316	0.36	+0.4
3,368,761	-		GFF3316	0.36	-1.1
3,368,761	-		GFF3316	0.36	+0.6
3,368,761	-		GFF3316	0.36	-1.3
3,368,761	-		GFF3316	0.36	-0.3
3,368,761	-		GFF3316	0.36	-0.1
3,368,761	-		GFF3316	0.36	-3.1
3,368,761	-		GFF3316	0.36	+0.6
3,368,801	+		GFF3316	0.41	+0.5
3,368,801	+		GFF3316	0.41	+0.9
3,368,801	+		GFF3316	0.41	+0.4
3,368,801	+		GFF3316	0.41	-0.5
3,368,801	+		GFF3316	0.41	+0.6
3,368,801	+		GFF3316	0.41	-0.3
3,368,809	-		GFF3316	0.41	+0.0
3,368,809	-		GFF3316	0.41	-1.0
3,368,809	-		GFF3316	0.41	+1.1
3,368,827	+		GFF3316	0.44	+0.0
3,368,835	-		GFF3316	0.44	+0.9
3,368,835	-		GFF3316	0.44	+0.5
3,368,854	+		GFF3316	0.47	-0.1
3,368,854	+		GFF3316	0.47	-1.3
3,368,861	+		GFF3316	0.47	-0.4
3,368,861	+		GFF3316	0.47	-0.1
3,368,861	+		GFF3316	0.47	+0.1
3,368,862	-		GFF3316	0.48	+0.4
3,368,872	+		GFF3316	0.49	-2.2
3,368,874	-		GFF3316	0.49	-0.6
3,368,878	+		GFF3316	0.49	-0.3
3,368,880	-		GFF3316	0.50	-1.5
3,368,882	-		GFF3316	0.50	-2.0
3,368,883	+		GFF3316	0.50	+0.4
3,368,886	-		GFF3316	0.50	-0.2
3,368,886	-		GFF3316	0.50	+0.9
3,368,890	+		GFF3316	0.51	-1.8
3,368,891	-		GFF3316	0.51	-1.9
3,368,891	-		GFF3316	0.51	-0.7
3,368,909	+		GFF3316	0.53	+1.3
3,368,914	+		GFF3316	0.53	+0.5
3,368,917	-		GFF3316	0.54	-0.9
3,368,917	-		GFF3316	0.54	-0.4
3,368,930	+		GFF3316	0.55	+0.0
3,368,930	+		GFF3316	0.55	-0.2
3,368,940	+		GFF3316	0.56	-0.7
3,368,948	-		GFF3316	0.57	-0.5
3,368,948	-		GFF3316	0.57	+0.5
3,368,948	-		GFF3316	0.57	+1.0
3,368,948	-		GFF3316	0.57	+1.3
3,368,972	-		GFF3316	0.60	-0.1
3,368,975	+		GFF3316	0.60	-1.8
3,368,988	-		GFF3316	0.62	+0.5
3,368,988	-		GFF3316	0.62	-1.0
3,369,016	-		GFF3316	0.65	+0.9
3,369,031	+		GFF3316	0.67	+0.5
3,369,034	-		GFF3316	0.67	+0.2
3,369,038	+		GFF3316	0.67	-0.4
3,369,066	+		GFF3316	0.71	-0.1
3,369,066	+		GFF3316	0.71	-1.1
3,369,066	+		GFF3316	0.71	+1.2
3,369,066	+		GFF3316	0.71	+0.4
3,369,066	+		GFF3316	0.71	-0.2
3,369,066	+		GFF3316	0.71	+0.4
3,369,074	-		GFF3316	0.72	-0.8
3,369,074	-		GFF3316	0.72	-1.2
3,369,074	-		GFF3316	0.72	+0.0
3,369,074	-		GFF3316	0.72	-0.4
3,369,074	-		GFF3316	0.72	-0.2
3,369,076	+		GFF3316	0.72	-0.4
3,369,076	+		GFF3316	0.72	+0.2
3,369,079	-		GFF3316	0.72	-0.3
3,369,084	-		GFF3316	0.73	+0.8
3,369,084	-		GFF3316	0.73	-0.5
3,369,096	+		GFF3316	0.74	-0.6
3,369,096	+		GFF3316	0.74	-0.6
3,369,098	+		GFF3316	0.74	-1.2
3,369,098	+		GFF3316	0.74	+0.8
3,369,098	+		GFF3316	0.74	-1.4
3,369,098	+		GFF3316	0.74	+0.4
3,369,098	+		GFF3316	0.74	+0.2
3,369,099	-		GFF3316	0.74	+0.9
3,369,104	-		GFF3316	0.75	-0.6
3,369,106	-		GFF3316	0.75	-1.7
3,369,106	-		GFF3316	0.75	-0.8
3,369,106	-		GFF3316	0.75	-0.8
3,369,147	+		GFF3316	0.80	+0.2
3,369,147	+		GFF3316	0.80	+0.0
3,369,148	+		GFF3316	0.80	+0.2
3,369,150	-		GFF3316	0.80	-1.7
3,369,158	+		GFF3316	0.81	+0.3
3,369,160	-		GFF3316	0.81	-1.0
3,369,179	+		GFF3316	0.83	-0.4
3,369,179	+		GFF3316	0.83	+0.2
3,369,179	+		GFF3316	0.83	-0.4
3,369,179	+		GFF3316	0.83	-0.1
3,369,187	-		GFF3316	0.84	-1.5
3,369,187	-		GFF3316	0.84	+0.7
3,369,187	-		GFF3316	0.84	+0.0
3,369,187	-		GFF3316	0.84	-0.3
3,369,193	+		GFF3316	0.85	+0.8
3,369,193	+		GFF3316	0.85	-0.2
3,369,193	+		GFF3316	0.85	+0.2
3,369,201	-		GFF3316	0.86	-1.9
3,369,201	-		GFF3316	0.86	-0.5
3,369,211	-		GFF3316	0.87	+0.2