Strain Fitness in Sphingobium sp. HT1-2 around GFF3307

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
3,358,298	+		GFF3305	0.66	-3.2
3,358,304	+		GFF3305	0.67	-2.0
3,358,306	-		GFF3305	0.67	-2.2
3,358,326	+		GFF3305	0.69	-2.2
3,358,328	-		GFF3305	0.70	-0.1
3,358,376	+		GFF3305	0.75	-2.3
3,358,376	-		GFF3305	0.75	-2.6
3,358,383	+		GFF3305	0.76	-0.2
3,358,390	-		GFF3305	0.77	-2.4
3,358,391	-		GFF3305	0.77	-1.9
3,358,419	-		GFF3305	0.81	-1.9
3,358,441	+		GFF3305	0.83	-1.8
3,358,468	+		GFF3305	0.86	-1.7
3,358,476	-		GFF3305	0.87	-3.3
3,358,478	-		GFF3305	0.88	-1.9
3,358,483	-		GFF3305	0.88	-2.7
3,358,515	-				-0.1
3,358,515	-				-1.4
3,358,515	-				-0.8
3,358,515	-				+0.2
3,358,547	+				-1.4
3,358,548	+				-1.1
3,358,549	-				-0.2
3,358,555	-				-0.3
3,358,555	-				+0.9
3,358,555	-				-1.5
3,358,556	-				+0.6
3,358,570	+				-0.4
3,358,573	+				-1.3
3,358,574	+				+0.9
3,358,582	-				-0.3
3,358,620	+				-1.5
3,358,620	+				+1.0
3,358,627	+				-0.3
3,358,627	+				-0.3
3,358,627	+				-1.3
3,358,627	+				-0.6
3,358,627	+				+0.3
3,358,628	-				+1.2
3,358,635	-				+0.2
3,358,635	-				-2.2
3,358,636	-				-0.3
3,358,647	-				+0.8
3,358,649	-				-0.7
3,358,649	-				-0.3
3,358,652	-				-2.7
3,358,657	-				+0.8
3,358,662	-				-0.5
3,358,697	+				+0.3
3,358,697	+				-0.5
3,358,697	+				-1.3
3,358,699	+				-1.7
3,358,699	+				+0.5
3,358,709	+				-0.4
3,358,724	+				-0.4
3,358,724	+				-0.3
3,358,729	+				-0.3
3,358,729	+				-2.2
3,358,736	+				-0.5
3,358,736	+				+0.7
3,358,736	+				+0.6
3,358,736	+				+1.7
3,358,736	+				-0.2
3,358,736	+				-1.9
3,358,736	+				+1.1
3,358,736	+				+0.2
3,358,736	+				-1.0
3,358,744	-				+0.2
3,358,744	-				-0.0
3,358,744	-				+1.4
3,358,744	-				-1.5
3,358,744	-				-0.2
3,358,744	-				-0.2
3,358,744	-				+1.0
3,358,744	-				+0.8
3,358,744	-				+0.0
3,358,744	-				-0.0
3,358,744	-				-1.0
3,358,744	-				-1.0
3,358,744	-				+0.0
3,358,744	-				-0.4
3,358,744	-				+1.8
3,358,744	-				-0.6
3,358,744	-				-0.1
3,358,756	+				+0.1
3,358,760	-				+0.7
3,358,764	-				-1.1
3,358,779	-				-0.1
3,358,779	-				-0.2
3,358,789	+				-0.7
3,358,802	-		GFF3306	0.12	-0.9
3,358,802	-		GFF3306	0.12	+0.8
3,358,812	+		GFF3306	0.14	-1.3
3,358,848	-		GFF3306	0.20	-0.6
3,358,881	+		GFF3306	0.27	-0.2
3,358,897	+		GFF3306	0.30	+0.1
3,358,897	+		GFF3306	0.30	-0.8
3,358,905	-		GFF3306	0.31	-0.8
3,358,941	+		GFF3306	0.38	-0.4
3,358,941	+		GFF3306	0.38	-2.5
3,358,941	+		GFF3306	0.38	-0.1
3,358,941	+		GFF3306	0.38	+0.1
3,358,944	-		GFF3306	0.38	-0.8
3,358,949	-		GFF3306	0.39	-2.0
3,358,965	+		GFF3306	0.42	-0.4
3,358,966	+		GFF3306	0.42	-0.0
3,358,971	+		GFF3306	0.43	-0.6
3,358,973	-		GFF3306	0.44	-0.3
3,358,974	-		GFF3306	0.44	-0.3
3,358,981	-		GFF3306	0.45	+1.8
3,359,000	-		GFF3306	0.49	-2.1
3,359,015	-		GFF3306	0.52	-0.9
3,359,018	+		GFF3306	0.52	-1.7
3,359,036	-		GFF3306	0.55	-0.1
3,359,036	-		GFF3306	0.55	-1.3
3,359,036	-		GFF3306	0.55	-1.0
3,359,040	+		GFF3306	0.56	-0.6
3,359,104	+		GFF3306	0.68	-0.4
3,359,110	+		GFF3306	0.69	+0.4
3,359,110	+		GFF3306	0.69	-1.4
3,359,118	-		GFF3306	0.71	+1.0
3,359,130	+		GFF3306	0.73	-0.5
3,359,130	+		GFF3306	0.73	-0.7
3,359,154	-		GFF3306	0.77	-0.5
3,359,168	-		GFF3306	0.80	+0.4
3,359,184	+		GFF3306	0.83	+1.2
3,359,188	+		GFF3306	0.84	-0.4
3,359,196	-		GFF3306	0.85	-0.1
3,359,196	-		GFF3306	0.85	+0.6
3,359,198	-		GFF3306	0.86	-1.5
3,359,200	+		GFF3306	0.86	-1.5
3,359,217	-		GFF3306	0.89	-0.6
3,359,234	-				-0.1
3,359,234	-				-0.5
3,359,256	-				-1.0
3,359,266	+				+0.0
3,359,269	-				+0.2
3,359,269	-				-0.6
3,359,312	-				-0.5
3,359,312	-				+1.0
3,359,349	+		GFF3307	0.17	-1.8
3,359,357	-		GFF3307	0.19	-0.7
3,359,357	-		GFF3307	0.19	-0.0
3,359,357	-		GFF3307	0.19	-2.0
3,359,357	-		GFF3307	0.19	+0.8
3,359,357	-		GFF3307	0.19	-0.1
3,359,421	+		GFF3307	0.34	+0.6
3,359,433	+		GFF3307	0.37	-1.2
3,359,483	+		GFF3307	0.49	+0.0
3,359,483	-		GFF3307	0.49	-0.4
3,359,521	+		GFF3307	0.58	+0.2
3,359,536	-		GFF3307	0.62	+0.4
3,359,537	+		GFF3307	0.62	-0.1
3,359,549	-		GFF3307	0.65	-1.8
3,359,561	-		GFF3307	0.68	-0.7
3,359,563	+		GFF3307	0.69	+0.1
3,359,581	+		GFF3307	0.73	+0.5
3,359,587	-		GFF3307	0.74	-1.4
3,359,589	-		GFF3307	0.75	-1.2
3,359,601	+		GFF3307	0.78	-0.1
3,359,602	-		GFF3307	0.78	+0.4
3,359,607	-		GFF3307	0.79	+0.0
3,359,609	-		GFF3307	0.80	-1.0
3,359,628	+		GFF3307	0.84	-1.0
3,359,650	+		GFF3307	0.90	-0.5
3,359,650	+		GFF3307	0.90	-1.4
3,359,650	+		GFF3307	0.90	-1.2
3,359,653	-				-2.0
3,359,653	-				-1.0
3,359,653	-				-0.8
3,359,653	-				-0.2
3,359,654	+				+0.8
3,359,655	+				-0.0
3,359,658	-				-1.1
3,359,662	-				+0.0
3,359,663	-				+1.1
3,359,670	-				-0.1
3,359,694	+				+0.2
3,359,701	+				-0.6
3,359,702	-				+0.8
3,359,709	-				+0.6
3,359,709	-				-1.9
3,359,709	-				-0.4
3,359,709	-				-1.0
3,359,713	+				-2.3
3,359,721	-				+0.5
3,359,740	+				+0.2
3,359,740	+				+0.8
3,359,743	-				+0.0
3,359,748	-				-0.5
3,359,748	-				-1.2
3,359,751	+				-1.0
3,359,760	+				-2.2
3,359,760	+				-0.1
3,359,760	+				-0.5
3,359,760	+				+0.7
3,359,760	+				+0.0
3,359,760	+				-0.7
3,359,760	+				+0.8
3,359,760	+				-0.7
3,359,760	+				-1.3
3,359,760	+				-1.5
3,359,760	+				+0.6
3,359,760	+				-2.3
3,359,768	-				-1.8
3,359,768	-				+0.1
3,359,768	-				-1.2
3,359,768	-				-0.7
3,359,768	-				-1.1
3,359,768	-				-1.0
3,359,798	+				+0.6
3,359,798	+				-2.5
3,359,805	+				-2.4
3,359,806	-				-0.0
3,359,816	-				-0.3
3,359,816	-				-2.3
3,359,816	-				-0.3
3,359,821	-				-2.4
3,359,823	+				-0.3
3,359,823	+				-2.0
3,359,823	+				-0.5
3,359,823	+				-1.2
3,359,830	+				-0.8
3,359,831	-				-0.2
3,359,831	-				+0.0
3,359,831	-				+0.9
3,359,831	-				+0.1
3,359,846	-				-1.0
3,359,872	+				-1.0
3,359,887	+				-0.5
3,359,887	+				+0.4
3,359,906	+				-1.4
3,359,906	+				-0.2
3,359,906	+				-0.4
3,359,906	+				-1.9
3,359,906	+				+1.2
3,359,914	-				+1.8
3,359,914	-				+0.0
3,359,914	-				-0.8
3,359,914	-				-0.4
3,359,914	-				+1.1
3,359,914	-				+0.1
3,359,914	-				-0.5
3,359,914	-				+0.0
3,359,914	-				-1.2
3,359,914	-				+0.6
3,359,931	+				+1.4
3,359,931	+				-2.2
3,359,931	+				-0.3
3,359,939	-				+1.4
3,359,957	+				-0.9
3,359,957	+				-2.2
3,359,957	+				+0.6
3,359,957	+				-0.3
3,359,957	+				+0.9
3,359,957	+				+0.8
3,359,962	+				-0.9
3,359,962	+				+0.7
3,359,965	-				-0.1
3,359,965	-				-0.2
3,359,965	-				-0.8
3,359,965	-				+0.4
3,359,965	-				+0.5
3,359,965	-				+0.3
3,359,965	-				+0.8
3,359,965	-				-0.1
3,359,965	-				-1.0
3,359,970	-				-2.3
3,359,972	+				+0.2
3,359,977	+				-1.6
3,359,990	+		GFF3308	0.11	+0.1
3,359,993	-		GFF3308	0.11	-0.9
3,360,025	+		GFF3308	0.12	-1.3
3,360,025	+		GFF3308	0.12	+0.6
3,360,025	+		GFF3308	0.12	+1.0
3,360,025	+		GFF3308	0.12	+0.5
3,360,025	+		GFF3308	0.12	+0.4
3,360,027	-		GFF3308	0.12	-1.5
3,360,030	+		GFF3308	0.12	+0.2
3,360,033	-		GFF3308	0.13	-1.4
3,360,033	-		GFF3308	0.13	-0.3
3,360,033	-		GFF3308	0.13	-1.0
3,360,038	-		GFF3308	0.13	-1.0
3,360,088	+		GFF3308	0.15	+1.3
3,360,090	+		GFF3308	0.15	-0.8
3,360,099	+		GFF3308	0.16	-0.0
3,360,141	-		GFF3308	0.18	-0.3
3,360,202	+		GFF3308	0.20	-0.8
3,360,202	+		GFF3308	0.20	-1.2
3,360,202	+		GFF3308	0.20	-0.5
3,360,202	+		GFF3308	0.20	+0.2
3,360,217	+		GFF3308	0.21	-2.0
3,360,225	+		GFF3308	0.21	-1.0
3,360,225	-		GFF3308	0.21	+0.9
3,360,233	-		GFF3308	0.22	+0.7
3,360,235	+		GFF3308	0.22	+1.2
3,360,235	+		GFF3308	0.22	+0.2
3,360,242	+		GFF3308	0.22	-1.4
3,360,244	-		GFF3308	0.22	-2.6
3,360,255	+		GFF3308	0.23	-1.2
3,360,255	+		GFF3308	0.23	-3.1
3,360,258	-		GFF3308	0.23	+0.2
3,360,268	-		GFF3308	0.23	-0.9
3,360,268	-		GFF3308	0.23	+0.5
3,360,268	-		GFF3308	0.23	-1.3
3,360,270	+		GFF3308	0.23	-1.1
3,360,270	+		GFF3308	0.23	+0.5
3,360,273	+		GFF3308	0.24	-0.1
3,360,273	-		GFF3308	0.24	-1.4
3,360,273	-		GFF3308	0.24	+0.4
3,360,273	-		GFF3308	0.24	-0.0
3,360,278	-		GFF3308	0.24	-0.7
3,360,278	-		GFF3308	0.24	+0.3
3,360,281	-		GFF3308	0.24	+0.0
3,360,329	+		GFF3308	0.26	+0.7
3,360,331	+		GFF3308	0.26	-0.5
3,360,331	+		GFF3308	0.26	+0.3
3,360,331	+		GFF3308	0.26	-2.1
3,360,339	-		GFF3308	0.27	-0.6
3,360,346	+		GFF3308	0.27	-2.8
3,360,346	+		GFF3308	0.27	-1.5
3,360,346	+		GFF3308	0.27	+0.3
3,360,346	+		GFF3308	0.27	-1.4
3,360,346	+		GFF3308	0.27	-0.1
3,360,354	-		GFF3308	0.27	-0.4
3,360,354	-		GFF3308	0.27	-0.1
3,360,376	-		GFF3308	0.28	+1.1
3,360,404	+		GFF3308	0.30	+0.8
3,360,412	-		GFF3308	0.30	+0.2
3,360,412	-		GFF3308	0.30	-2.0
3,360,414	+		GFF3308	0.30	+0.4
3,360,414	+		GFF3308	0.30	-0.1
3,360,414	+		GFF3308	0.30	+0.3
3,360,414	+		GFF3308	0.30	+0.5
3,360,414	+		GFF3308	0.30	-1.8
3,360,414	+		GFF3308	0.30	+1.2
3,360,414	+		GFF3308	0.30	-0.0
3,360,419	+		GFF3308	0.30	-0.9
3,360,420	-		GFF3308	0.30	+0.9
3,360,422	-		GFF3308	0.31	-0.4
3,360,422	-		GFF3308	0.31	-1.9
3,360,424	+		GFF3308	0.31	-0.3
3,360,427	-		GFF3308	0.31	+0.5
3,360,427	-		GFF3308	0.31	-0.6
3,360,427	-		GFF3308	0.31	-1.2
3,360,427	-		GFF3308	0.31	+1.3
3,360,432	-		GFF3308	0.31	-0.6
3,360,443	+		GFF3308	0.31	+0.2
3,360,444	+		GFF3308	0.32	-0.4
3,360,462	-		GFF3308	0.32	-1.8
3,360,496	-		GFF3308	0.34	+0.7
3,360,528	-		GFF3308	0.35	-0.4
3,360,546	+		GFF3308	0.36	-1.4
3,360,550	+		GFF3308	0.36	+1.2
3,360,550	-		GFF3308	0.36	-1.8
3,360,554	-		GFF3308	0.37	-1.7
3,360,582	+		GFF3308	0.38	+1.2
3,360,590	-		GFF3308	0.38	+0.6
3,360,605	+		GFF3308	0.39	-1.3
3,360,605	+		GFF3308	0.39	-1.9
3,360,605	+		GFF3308	0.39	+0.3
3,360,612	+		GFF3308	0.39	-2.1
3,360,613	-		GFF3308	0.39	+1.1
3,360,613	-		GFF3308	0.39	-1.0
3,360,613	-		GFF3308	0.39	-0.5
3,360,613	-		GFF3308	0.39	+0.5
3,360,613	-		GFF3308	0.39	-2.2
3,360,618	+		GFF3308	0.40	-1.0
3,360,620	+		GFF3308	0.40	-1.5
3,360,628	+		GFF3308	0.40	+0.7
3,360,628	+		GFF3308	0.40	-0.4
3,360,628	+		GFF3308	0.40	+0.1
3,360,636	-		GFF3308	0.40	-0.2
3,360,636	-		GFF3308	0.40	+0.2
3,360,636	-		GFF3308	0.40	-2.0
3,360,636	-		GFF3308	0.40	+0.8
3,360,636	-		GFF3308	0.40	-0.2
3,360,636	-		GFF3308	0.40	+0.0
3,360,691	+		GFF3308	0.43	-0.6