Strain Fitness in Sphingobium sp. HT1-2 around GFF3286

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
3,339,331	+				-0.0
3,339,350	+				-0.1
3,339,398	-				+0.7
3,339,421	+		GFF3285	0.11	-0.9
3,339,434	+		GFF3285	0.12	+0.4
3,339,441	+		GFF3285	0.13	-0.3
3,339,441	+		GFF3285	0.13	+0.4
3,339,442	-		GFF3285	0.13	-1.5
3,339,449	-		GFF3285	0.14	-0.1
3,339,449	-		GFF3285	0.14	+0.1
3,339,449	-		GFF3285	0.14	-1.9
3,339,449	-		GFF3285	0.14	-1.0
3,339,469	-		GFF3285	0.16	+0.7
3,339,485	-		GFF3285	0.17	-1.0
3,339,501	+		GFF3285	0.19	-0.3
3,339,501	+		GFF3285	0.19	+0.2
3,339,509	-		GFF3285	0.20	-0.2
3,339,509	-		GFF3285	0.20	+0.4
3,339,509	-		GFF3285	0.20	-1.6
3,339,519	-		GFF3285	0.21	-0.1
3,339,562	-		GFF3285	0.25	-0.8
3,339,562	-		GFF3285	0.25	-1.1
3,339,586	+		GFF3285	0.28	+1.7
3,339,588	+		GFF3285	0.28	+1.4
3,339,611	-		GFF3285	0.30	+1.0
3,339,629	-		GFF3285	0.32	-0.8
3,339,666	-		GFF3285	0.36	-2.3
3,339,678	+		GFF3285	0.37	+0.1
3,339,678	+		GFF3285	0.37	-0.4
3,339,711	+		GFF3285	0.41	-0.3
3,339,739	-		GFF3285	0.44	-1.8
3,339,777	-		GFF3285	0.48	+0.9
3,339,779	-		GFF3285	0.48	+0.5
3,339,779	-		GFF3285	0.48	-1.9
3,339,780	+		GFF3285	0.48	-0.8
3,339,788	-		GFF3285	0.49	-1.3
3,339,813	-		GFF3285	0.51	-1.5
3,339,819	+		GFF3285	0.52	+0.2
3,339,827	+		GFF3285	0.53	-0.1
3,339,827	+		GFF3285	0.53	+0.9
3,339,827	+		GFF3285	0.53	-1.6
3,339,827	+		GFF3285	0.53	+1.2
3,339,827	-		GFF3285	0.53	-0.5
3,339,835	-		GFF3285	0.54	-1.0
3,339,835	-		GFF3285	0.54	+0.5
3,339,835	-		GFF3285	0.54	-1.5
3,339,836	+		GFF3285	0.54	-1.3
3,339,837	+		GFF3285	0.54	-1.1
3,339,837	+		GFF3285	0.54	-1.8
3,339,843	+		GFF3285	0.54	-0.1
3,339,849	+		GFF3285	0.55	-0.6
3,339,849	+		GFF3285	0.55	+0.7
3,339,849	+		GFF3285	0.55	-2.3
3,339,849	+		GFF3285	0.55	+0.1
3,339,851	-		GFF3285	0.55	-0.3
3,339,857	-		GFF3285	0.56	-0.3
3,339,857	-		GFF3285	0.56	+0.3
3,339,857	-		GFF3285	0.56	-1.4
3,339,891	+		GFF3285	0.59	+0.7
3,339,899	+		GFF3285	0.60	-0.3
3,339,899	+		GFF3285	0.60	+0.1
3,339,907	-		GFF3285	0.61	-1.6
3,339,907	-		GFF3285	0.61	+0.1
3,339,940	+		GFF3285	0.64	-0.1
3,339,965	-		GFF3285	0.67	-1.8
3,339,976	+		GFF3285	0.68	-0.1
3,339,978	+		GFF3285	0.68	+0.5
3,339,997	+		GFF3285	0.70	+0.1
3,340,002	+		GFF3285	0.71	+0.2
3,340,005	-		GFF3285	0.71	-1.4
3,340,038	+		GFF3285	0.75	-1.3
3,340,043	+		GFF3285	0.75	+0.1
3,340,046	-		GFF3285	0.75	+0.2
3,340,051	-		GFF3285	0.76	-1.2
3,340,051	-		GFF3285	0.76	-0.5
3,340,051	-		GFF3285	0.76	-0.8
3,340,061	+		GFF3285	0.77	-1.0
3,340,061	+		GFF3285	0.77	-1.4
3,340,069	+		GFF3285	0.78	+0.9
3,340,069	-		GFF3285	0.78	-0.4
3,340,082	-		GFF3285	0.79	+0.7
3,340,084	+		GFF3285	0.79	+0.5
3,340,084	+		GFF3285	0.79	+1.2
3,340,084	+		GFF3285	0.79	-0.9
3,340,087	-		GFF3285	0.80	-0.8
3,340,087	-		GFF3285	0.80	-0.1
3,340,087	-		GFF3285	0.80	+0.1
3,340,087	-		GFF3285	0.80	+0.1
3,340,092	-		GFF3285	0.80	-1.4
3,340,092	-		GFF3285	0.80	-2.4
3,340,092	-		GFF3285	0.80	-1.0
3,340,092	-		GFF3285	0.80	-0.0
3,340,098	+		GFF3285	0.81	+1.1
3,340,098	+		GFF3285	0.81	+0.2
3,340,110	+		GFF3285	0.82	+0.1
3,340,110	+		GFF3285	0.82	-0.4
3,340,118	-		GFF3285	0.83	+0.6
3,340,123	-		GFF3285	0.83	+0.6
3,340,124	+		GFF3285	0.84	-1.1
3,340,132	-		GFF3285	0.84	-0.6
3,340,132	-		GFF3285	0.84	-1.9
3,340,132	-		GFF3285	0.84	-2.2
3,340,164	-		GFF3285	0.88	+0.1
3,340,184	+		GFF3285	0.90	+0.9
3,340,235	+				-0.5
3,340,235	+				-2.1
3,340,235	+				-0.4
3,340,235	+				-0.4
3,340,243	-				+0.9
3,340,243	-				+0.6
3,340,243	-				-1.9
3,340,243	-				-2.1
3,340,245	+				-0.3
3,340,253	-				+0.6
3,340,253	-				-2.5
3,340,301	+				+0.5
3,340,301	+				-0.1
3,340,301	+				-0.4
3,340,303	-				-0.7
3,340,309	-				+0.7
3,340,309	-				-0.7
3,340,309	-				+0.4
3,340,324	+				-0.4
3,340,324	+				-1.9
3,340,416	-		GFF3286	0.10	-1.1
3,340,426	+		GFF3286	0.11	+0.6
3,340,429	-		GFF3286	0.12	-0.6
3,340,462	+		GFF3286	0.15	-0.8
3,340,474	+		GFF3286	0.16	+0.9
3,340,474	+		GFF3286	0.16	+0.1
3,340,474	+		GFF3286	0.16	-0.8
3,340,474	+		GFF3286	0.16	+0.1
3,340,474	+		GFF3286	0.16	-1.4
3,340,474	+		GFF3286	0.16	-0.5
3,340,474	+		GFF3286	0.16	-0.6
3,340,479	+		GFF3286	0.16	-1.9
3,340,493	+		GFF3286	0.18	-0.2
3,340,493	+		GFF3286	0.18	+0.3
3,340,507	+		GFF3286	0.19	-0.6
3,340,515	-		GFF3286	0.20	-1.2
3,340,524	+		GFF3286	0.21	+0.7
3,340,530	-		GFF3286	0.21	-1.6
3,340,533	-		GFF3286	0.22	+0.9
3,340,555	+		GFF3286	0.24	-1.2
3,340,555	+		GFF3286	0.24	-0.1
3,340,556	-		GFF3286	0.24	+0.1
3,340,563	-		GFF3286	0.24	-0.5
3,340,563	-		GFF3286	0.24	-0.1
3,340,568	+		GFF3286	0.25	+0.8
3,340,582	-		GFF3286	0.26	-0.4
3,340,602	-		GFF3286	0.28	+0.6
3,340,617	-		GFF3286	0.29	+0.7
3,340,627	+		GFF3286	0.30	+0.5
3,340,635	-		GFF3286	0.31	-0.1
3,340,635	-		GFF3286	0.31	+0.4
3,340,635	-		GFF3286	0.31	-1.9
3,340,637	+		GFF3286	0.31	-1.5
3,340,655	-		GFF3286	0.33	+1.1
3,340,675	-		GFF3286	0.35	+0.4
3,340,747	+		GFF3286	0.42	-0.3
3,340,752	+		GFF3286	0.42	-0.1
3,340,752	+		GFF3286	0.42	-0.3
3,340,752	+		GFF3286	0.42	-0.5
3,340,752	+		GFF3286	0.42	-2.9
3,340,752	+		GFF3286	0.42	-0.7
3,340,760	-		GFF3286	0.43	-1.3
3,340,760	-		GFF3286	0.43	+0.1
3,340,764	-		GFF3286	0.43	-0.9
3,340,783	-		GFF3286	0.45	-1.0
3,340,789	+		GFF3286	0.46	+1.2
3,340,789	+		GFF3286	0.46	+1.2
3,340,799	-		GFF3286	0.47	-0.1
3,340,805	-		GFF3286	0.47	-1.3
3,340,861	+		GFF3286	0.53	+0.3
3,340,892	+		GFF3286	0.55	-0.1
3,340,893	+		GFF3286	0.56	+0.7
3,340,901	+		GFF3286	0.56	-0.0
3,340,911	-		GFF3286	0.57	-0.0
3,340,914	+		GFF3286	0.58	-0.5
3,340,936	-		GFF3286	0.60	+0.2
3,340,954	-		GFF3286	0.61	-2.3
3,340,989	+		GFF3286	0.65	-0.3
3,341,020	-		GFF3286	0.68	+0.7
3,341,043	+		GFF3286	0.70	-1.9
3,341,073	-		GFF3286	0.73	-2.3
3,341,140	-		GFF3286	0.79	-1.4
3,341,141	+		GFF3286	0.79	+1.7
3,341,198	+		GFF3286	0.84	+1.6
3,341,198	+		GFF3286	0.84	+0.2
3,341,206	-		GFF3286	0.85	+0.2
3,341,209	+		GFF3286	0.85	+0.2
3,341,217	+		GFF3286	0.86	+0.4
3,341,217	-		GFF3286	0.86	+0.8
3,341,217	-		GFF3286	0.86	-0.1
3,341,254	+		GFF3286	0.90	-1.4
3,341,254	+		GFF3286	0.90	+0.8
3,341,254	+		GFF3286	0.90	+0.5
3,341,262	-				-0.4
3,341,262	-				-0.5
3,341,287	+				-1.4
3,341,342	+				+0.0
3,341,350	-				+0.4
3,341,360	-				-1.9
3,341,369	+				+0.6
3,341,369	-				-2.5
3,341,380	+				-0.9
3,341,387	-		GFF3287	0.12	-0.5
3,341,412	+		GFF3287	0.18	-0.1
3,341,419	+		GFF3287	0.20	-1.1
3,341,424	+		GFF3287	0.22	-1.6
3,341,424	+		GFF3287	0.22	-0.4
3,341,427	-		GFF3287	0.22	+0.9
3,341,432	+		GFF3287	0.24	-0.2
3,341,432	-		GFF3287	0.24	-0.3
3,341,469	-		GFF3287	0.34	+0.7
3,341,480	+		GFF3287	0.37	-2.1
3,341,500	+		GFF3287	0.42	-1.3
3,341,542	+		GFF3287	0.54	-0.0
3,341,542	-		GFF3287	0.54	+0.1
3,341,549	+		GFF3287	0.56	+0.7
3,341,550	-		GFF3287	0.56	-0.8
3,341,593	-		GFF3287	0.67	+0.1
3,341,605	-		GFF3287	0.71	-1.1
3,341,610	-		GFF3287	0.72	-2.2
3,341,627	+		GFF3287	0.77	+0.1
3,341,627	+		GFF3287	0.77	+1.4
3,341,635	-		GFF3287	0.79	-1.2
3,341,639	-		GFF3287	0.80	-0.4
3,341,654	-		GFF3287	0.84	-0.5
3,341,675	+		GFF3287	0.90	+0.4
3,341,675	+		GFF3287	0.90	+0.1
3,341,725	+				-1.8
3,341,726	+				-1.4
3,341,742	+				-1.5
3,341,742	+				-1.1
3,341,742	+				+1.6
3,341,742	+				+0.4
3,341,750	-				+0.9
3,341,751	+				-0.4
3,341,764	+				+0.5
3,341,764	+				+0.2
3,341,772	-				+0.2
3,341,781	+		GFF3288	0.10	-2.9
3,341,787	+		GFF3288	0.11	+0.6
3,341,787	+		GFF3288	0.11	-0.3
3,341,795	-		GFF3288	0.12	-2.4
3,341,797	+		GFF3288	0.13	+0.2
3,341,810	-		GFF3288	0.15	+0.7
3,341,861	+		GFF3288	0.22	+0.4
3,341,866	+		GFF3288	0.23	-1.4
3,341,869	-		GFF3288	0.23	-0.1
3,341,894	+		GFF3288	0.27	-0.8
3,341,896	-		GFF3288	0.27	+0.3
3,341,902	-		GFF3288	0.28	+0.7
3,341,909	+		GFF3288	0.29	-1.0
3,341,913	+		GFF3288	0.30	-0.5
3,341,923	+		GFF3288	0.31	+0.5
3,341,931	-		GFF3288	0.32	+0.8
3,341,938	+		GFF3288	0.33	-0.6
3,341,949	-		GFF3288	0.35	-0.5
3,341,958	-		GFF3288	0.36	+1.3
3,341,958	-		GFF3288	0.36	-0.3
3,341,966	+		GFF3288	0.38	+0.3
3,341,969	-		GFF3288	0.38	+0.1
3,341,971	+		GFF3288	0.38	-1.3
3,341,971	+		GFF3288	0.38	+0.8
3,341,971	+		GFF3288	0.38	-0.9
3,341,979	-		GFF3288	0.40	-0.2
3,341,989	-		GFF3288	0.41	-3.1
3,341,990	+		GFF3288	0.41	-0.8
3,341,990	+		GFF3288	0.41	-2.4
3,341,998	-		GFF3288	0.42	+0.7
3,342,002	+		GFF3288	0.43	-1.7
3,342,010	-		GFF3288	0.44	-0.5
3,342,010	-		GFF3288	0.44	-1.3
3,342,010	-		GFF3288	0.44	+0.4
3,342,025	+		GFF3288	0.46	-0.0
3,342,025	+		GFF3288	0.46	+0.2
3,342,029	+		GFF3288	0.47	+0.6
3,342,029	+		GFF3288	0.47	-1.7
3,342,029	+		GFF3288	0.47	-2.2
3,342,048	+		GFF3288	0.50	+0.8
3,342,060	+		GFF3288	0.52	+1.2
3,342,092	-		GFF3288	0.56	-1.9
3,342,094	+		GFF3288	0.57	-2.6
3,342,102	-		GFF3288	0.58	+0.8
3,342,129	-		GFF3288	0.62	-0.1
3,342,131	+		GFF3288	0.62	-1.4
3,342,139	-		GFF3288	0.63	-1.7
3,342,142	+		GFF3288	0.64	+0.5
3,342,142	+		GFF3288	0.64	-0.2
3,342,142	+		GFF3288	0.64	-2.6
3,342,150	-		GFF3288	0.65	+0.7
3,342,150	-		GFF3288	0.65	-0.7
3,342,150	-		GFF3288	0.65	+0.3
3,342,150	-		GFF3288	0.65	+0.4
3,342,150	-		GFF3288	0.65	-0.9
3,342,155	-		GFF3288	0.66	+0.1
3,342,197	+		GFF3288	0.72	+0.1
3,342,197	+		GFF3288	0.72	+0.5
3,342,207	+		GFF3288	0.73	-0.4
3,342,214	-		GFF3288	0.74	-0.2
3,342,216	-		GFF3288	0.75	-0.5
3,342,231	+		GFF3288	0.77	+0.3
3,342,239	-		GFF3288	0.78	-0.9
3,342,243	-		GFF3288	0.79	-0.8
3,342,263	+		GFF3288	0.82	-0.2
3,342,271	-		GFF3288	0.83	+1.2
3,342,271	-		GFF3288	0.83	-0.8
3,342,274	+		GFF3288	0.83	+0.1
3,342,274	+		GFF3288	0.83	-0.4
3,342,274	+		GFF3288	0.83	-0.9
3,342,274	+		GFF3288	0.83	-1.4
3,342,282	-		GFF3288	0.84	+0.5
3,342,282	-		GFF3288	0.84	+0.6
3,342,282	-		GFF3288	0.84	+0.6
3,342,282	-		GFF3288	0.84	-0.3
3,342,282	-		GFF3288	0.84	-0.3
3,342,284	+		GFF3288	0.85	+1.2
3,342,291	+		GFF3288	0.86	+1.4
3,342,299	-		GFF3288	0.87	+0.1
3,342,299	-		GFF3288	0.87	-0.3
3,342,301	-		GFF3288	0.87	-0.2
3,342,309	-		GFF3288	0.88	+0.1
3,342,313	+		GFF3288	0.89	-0.1
3,342,313	+		GFF3288	0.89	-0.8
3,342,321	-				-1.5
3,342,321	-				+0.2
3,342,321	-				-0.7
3,342,321	-				+0.7
3,342,356	-				-1.5
3,342,361	-				-1.8