Strain Fitness in Sphingobium sp. HT1-2 around GFF3031

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
3,105,079	-		GFF3029	0.73	-1.2
3,105,080	+		GFF3029	0.73	-1.2
3,105,154	-		GFF3029	0.76	-1.4
3,105,170	-		GFF3029	0.77	-0.3
3,105,179	-		GFF3029	0.78	-1.7
3,105,192	-		GFF3029	0.78	-1.2
3,105,214	-		GFF3029	0.79	-0.7
3,105,225	+		GFF3029	0.80	-0.6
3,105,225	+		GFF3029	0.80	-0.1
3,105,232	+		GFF3029	0.80	-1.0
3,105,233	-		GFF3029	0.80	-1.0
3,105,256	+		GFF3029	0.81	-1.6
3,105,269	-		GFF3029	0.82	-1.1
3,105,275	-		GFF3029	0.82	-1.4
3,105,279	-		GFF3029	0.83	-1.2
3,105,304	+		GFF3029	0.84	-0.6
3,105,309	+		GFF3029	0.84	-0.1
3,105,309	+		GFF3029	0.84	+0.3
3,105,309	+		GFF3029	0.84	+0.5
3,105,312	-		GFF3029	0.84	+0.5
3,105,312	-		GFF3029	0.84	+0.0
3,105,318	+		GFF3029	0.85	+0.5
3,105,318	+		GFF3029	0.85	-1.5
3,105,319	+		GFF3029	0.85	+0.0
3,105,319	-		GFF3029	0.85	-2.8
3,105,326	-		GFF3029	0.85	-0.9
3,105,333	+		GFF3029	0.85	-1.0
3,105,333	+		GFF3029	0.85	-2.4
3,105,333	+		GFF3029	0.85	+0.8
3,105,338	+		GFF3029	0.85	-1.6
3,105,344	+		GFF3029	0.86	+0.1
3,105,352	-		GFF3029	0.86	+0.6
3,105,372	+		GFF3029	0.87	+0.7
3,105,375	-		GFF3029	0.87	-1.5
3,105,390	+		GFF3029	0.88	+0.2
3,105,390	+		GFF3029	0.88	+0.1
3,105,413	+		GFF3029	0.89	+0.0
3,105,424	+		GFF3029	0.90	-0.2
3,105,460	+				-0.6
3,105,466	+				+0.1
3,105,468	-				-0.9
3,105,470	+				-2.0
3,105,481	+				-0.4
3,105,502	-				+0.7
3,105,541	+				+0.5
3,105,541	+				-0.0
3,105,549	-				-0.1
3,105,550	-				+0.5
3,105,550	-				-0.4
3,105,564	+				-0.7
3,105,564	+				-0.4
3,105,570	-				-0.2
3,105,572	-				+0.3
3,105,572	-				-0.1
3,105,608	+				+0.2
3,105,612	+				-0.1
3,105,644	+				+0.7
3,105,644	+				-0.2
3,105,655	+				-1.4
3,105,663	-				-0.1
3,105,665	-				-0.1
3,105,677	-				+0.1
3,105,678	-				-0.1
3,105,737	-		GFF3030	0.28	+0.8
3,105,741	+		GFF3030	0.31	-0.7
3,105,744	-		GFF3030	0.33	-1.0
3,105,755	+		GFF3030	0.40	+1.0
3,105,759	+		GFF3030	0.42	+0.7
3,105,773	-		GFF3030	0.51	-0.9
3,105,788	-		GFF3030	0.60	-2.2
3,105,818	+		GFF3030	0.79	-2.9
3,105,836	-				-2.4
3,105,843	+				-0.9
3,105,857	+				-1.1
3,105,895	+				-0.5
3,105,895	+				-0.6
3,105,895	+				-0.8
3,105,895	+				-0.3
3,105,895	+				+0.1
3,105,897	+				-1.2
3,105,903	-				-1.9
3,105,903	-				-1.1
3,105,903	-				-0.1
3,105,903	-				+0.2
3,105,903	-				-1.9
3,105,922	-				+1.1
3,105,929	-				+0.5
3,105,947	-				+0.1
3,105,947	-				-3.1
3,105,961	-				+0.5
3,105,971	-				-0.3
3,105,972	+				-0.2
3,105,982	-				-0.5
3,105,982	-				+0.1
3,105,982	-				-2.1
3,105,990	-				-0.3
3,106,004	+				+0.1
3,106,004	+				+0.2
3,106,010	-				+1.0
3,106,010	-				-1.7
3,106,016	-				-0.0
3,106,016	-				-1.2
3,106,074	+				-0.7
3,106,082	-				+0.3
3,106,121	+				-0.6
3,106,161	+				-2.6
3,106,169	-		GFF3031	0.11	-0.8
3,106,171	+		GFF3031	0.11	+0.4
3,106,190	-		GFF3031	0.13	+0.2
3,106,234	+		GFF3031	0.18	+0.3
3,106,237	-		GFF3031	0.18	+0.1
3,106,239	+		GFF3031	0.19	+0.4
3,106,257	-		GFF3031	0.21	-0.1
3,106,257	-		GFF3031	0.21	-0.3
3,106,262	-		GFF3031	0.21	-0.6
3,106,267	-		GFF3031	0.22	+0.1
3,106,267	-		GFF3031	0.22	-1.4
3,106,272	+		GFF3031	0.22	+0.3
3,106,275	-		GFF3031	0.23	+0.6
3,106,303	-		GFF3031	0.26	-2.4
3,106,329	+		GFF3031	0.29	-0.4
3,106,329	+		GFF3031	0.29	+0.4
3,106,329	+		GFF3031	0.29	+0.4
3,106,337	-		GFF3031	0.30	-1.8
3,106,339	+		GFF3031	0.30	-0.6
3,106,339	+		GFF3031	0.30	+0.3
3,106,339	+		GFF3031	0.30	-0.1
3,106,339	+		GFF3031	0.30	+0.7
3,106,339	+		GFF3031	0.30	-2.1
3,106,347	-		GFF3031	0.31	-1.7
3,106,347	-		GFF3031	0.31	-0.8
3,106,347	-		GFF3031	0.31	-2.3
3,106,347	-		GFF3031	0.31	+0.5
3,106,347	-		GFF3031	0.31	+0.8
3,106,382	-		GFF3031	0.35	-1.4
3,106,413	+		GFF3031	0.39	-0.3
3,106,418	-		GFF3031	0.39	-0.7
3,106,444	+		GFF3031	0.42	+0.4
3,106,444	+		GFF3031	0.42	-0.1
3,106,444	+		GFF3031	0.42	-1.8
3,106,449	+		GFF3031	0.43	-0.0
3,106,451	+		GFF3031	0.43	-2.0
3,106,451	+		GFF3031	0.43	-0.4
3,106,452	-		GFF3031	0.43	-0.0
3,106,457	+		GFF3031	0.44	+0.1
3,106,457	+		GFF3031	0.44	+0.3
3,106,457	+		GFF3031	0.44	-1.8
3,106,457	+		GFF3031	0.44	-2.9
3,106,465	-		GFF3031	0.45	-0.4
3,106,465	-		GFF3031	0.45	-1.7
3,106,465	-		GFF3031	0.45	+0.3
3,106,465	-		GFF3031	0.45	-0.1
3,106,498	+		GFF3031	0.48	-1.1
3,106,498	+		GFF3031	0.48	-0.3
3,106,521	+		GFF3031	0.51	-0.1
3,106,523	+		GFF3031	0.51	+1.2
3,106,523	+		GFF3031	0.51	-0.2
3,106,531	-		GFF3031	0.52	-1.9
3,106,531	-		GFF3031	0.52	+0.6
3,106,531	-		GFF3031	0.52	-0.9
3,106,531	-		GFF3031	0.52	-1.5
3,106,540	-		GFF3031	0.53	-0.2
3,106,571	+		GFF3031	0.57	-0.3
3,106,576	+		GFF3031	0.57	-0.2
3,106,578	+		GFF3031	0.58	-0.6
3,106,580	-		GFF3031	0.58	-0.9
3,106,586	-		GFF3031	0.58	+1.1
3,106,622	+		GFF3031	0.63	-1.4
3,106,622	+		GFF3031	0.63	+0.6
3,106,630	-		GFF3031	0.63	+1.2
3,106,695	+		GFF3031	0.71	-1.6
3,106,709	+		GFF3031	0.73	-2.9
3,106,712	-		GFF3031	0.73	+0.5
3,106,713	-		GFF3031	0.73	+0.8
3,106,742	+		GFF3031	0.76	-0.2
3,106,750	-		GFF3031	0.77	+1.1
3,106,755	+		GFF3031	0.78	+1.0
3,106,755	+		GFF3031	0.78	+0.2
3,106,755	+		GFF3031	0.78	+0.3
3,106,757	+		GFF3031	0.78	+0.9
3,106,757	+		GFF3031	0.78	+0.9
3,106,757	+		GFF3031	0.78	-0.3
3,106,757	+		GFF3031	0.78	+0.1
3,106,757	+		GFF3031	0.78	-0.8
3,106,757	+		GFF3031	0.78	-0.8
3,106,757	+		GFF3031	0.78	+0.0
3,106,763	-		GFF3031	0.79	+1.3
3,106,763	-		GFF3031	0.79	-0.2
3,106,765	-		GFF3031	0.79	-1.7
3,106,765	-		GFF3031	0.79	-0.6
3,106,789	+		GFF3031	0.82	-0.0
3,106,808	-		GFF3031	0.84	+1.1
3,106,864	-				-0.4
3,106,869	+				+0.2
3,106,875	+				-2.2
3,106,893	+				-1.4
3,106,898	+				+0.8
3,106,898	+				+1.2
3,106,901	-				-0.9
3,106,906	-				+0.8
3,106,906	-				-0.2
3,106,906	-				-0.3
3,106,906	-				+1.7
3,106,906	-				-1.3
3,106,936	+				+1.1
3,106,942	+				-1.5
3,106,942	+				-0.2
3,106,942	+				-1.8
3,106,942	+				-0.1
3,106,944	-				+0.3
3,106,944	-				+1.8
3,106,950	-				-1.5
3,106,967	-				-1.0
3,106,973	+				-0.7
3,106,981	-				-0.8
3,106,981	-				+0.0
3,106,996	-				+0.9
3,107,030	+				+0.6
3,107,038	-				-0.1
3,107,038	-				-0.4
3,107,048	-				-1.3
3,107,055	+				-0.4
3,107,056	-				+1.1
3,107,063	-				-2.4
3,107,063	-				+0.6
3,107,068	-				-0.0
3,107,068	-				-0.4
3,107,068	-				-0.4
3,107,090	+				-0.4
3,107,091	+				+0.3
3,107,091	+				+0.6
3,107,099	-				+0.4
3,107,099	-				-0.5
3,107,099	-				-0.6
3,107,099	-				+0.4
3,107,099	-				-0.4
3,107,154	+		GFF3032	0.12	-0.4
3,107,154	+		GFF3032	0.12	-1.0
3,107,162	-		GFF3032	0.12	-0.0
3,107,162	-		GFF3032	0.12	-3.0
3,107,170	-		GFF3032	0.13	-0.2
3,107,185	+		GFF3032	0.14	-1.6
3,107,185	+		GFF3032	0.14	-0.1
3,107,185	+		GFF3032	0.14	+0.2
3,107,185	+		GFF3032	0.14	-0.4
3,107,185	+		GFF3032	0.14	-0.7
3,107,190	+		GFF3032	0.14	-1.1
3,107,193	-		GFF3032	0.14	-0.9
3,107,193	-		GFF3032	0.14	-1.8
3,107,193	-		GFF3032	0.14	-0.9
3,107,198	-		GFF3032	0.15	-0.1
3,107,198	-		GFF3032	0.15	+0.6
3,107,198	-		GFF3032	0.15	-0.0
3,107,229	+		GFF3032	0.16	-0.4
3,107,229	+		GFF3032	0.16	+0.8
3,107,229	+		GFF3032	0.16	-1.5
3,107,229	+		GFF3032	0.16	+0.4
3,107,237	+		GFF3032	0.17	-0.0
3,107,237	-		GFF3032	0.17	+1.6
3,107,237	-		GFF3032	0.17	-1.6
3,107,245	-		GFF3032	0.17	-0.7
3,107,245	-		GFF3032	0.17	+0.6
3,107,247	+		GFF3032	0.17	-0.8
3,107,248	-		GFF3032	0.17	-1.8
3,107,255	-		GFF3032	0.18	-2.4
3,107,265	+		GFF3032	0.18	-0.3
3,107,276	+		GFF3032	0.19	+0.3
3,107,276	-		GFF3032	0.19	+0.6
3,107,277	-		GFF3032	0.19	+0.3
3,107,295	+		GFF3032	0.20	-2.2
3,107,295	+		GFF3032	0.20	+0.3
3,107,295	+		GFF3032	0.20	-1.5
3,107,295	+		GFF3032	0.20	-3.7
3,107,303	-		GFF3032	0.21	-0.1
3,107,303	-		GFF3032	0.21	-1.2
3,107,303	-		GFF3032	0.21	+0.1
3,107,328	+		GFF3032	0.22	+0.2
3,107,328	+		GFF3032	0.22	-1.1
3,107,331	-		GFF3032	0.22	-0.6
3,107,336	-		GFF3032	0.22	-0.3
3,107,336	-		GFF3032	0.22	-0.2
3,107,336	-		GFF3032	0.22	-0.8
3,107,336	-		GFF3032	0.22	+0.5
3,107,340	+		GFF3032	0.23	-0.8
3,107,355	+		GFF3032	0.24	-1.0
3,107,355	+		GFF3032	0.24	-1.6
3,107,360	+		GFF3032	0.24	-1.3
3,107,360	+		GFF3032	0.24	-0.0
3,107,360	+		GFF3032	0.24	-0.9
3,107,365	+		GFF3032	0.24	-2.4
3,107,368	-		GFF3032	0.24	-1.9
3,107,368	-		GFF3032	0.24	+0.3
3,107,368	-		GFF3032	0.24	-0.9
3,107,374	-		GFF3032	0.25	-0.7
3,107,389	+		GFF3032	0.26	-1.1
3,107,389	+		GFF3032	0.26	-0.1
3,107,389	+		GFF3032	0.26	-0.0
3,107,397	-		GFF3032	0.26	+0.1
3,107,432	+		GFF3032	0.28	-1.8
3,107,439	+		GFF3032	0.28	-1.3
3,107,439	+		GFF3032	0.28	+0.9
3,107,441	+		GFF3032	0.29	+0.1
3,107,447	-		GFF3032	0.29	+1.1
3,107,447	-		GFF3032	0.29	-2.5
3,107,447	-		GFF3032	0.29	+0.8
3,107,493	+		GFF3032	0.31	+0.6
3,107,532	+		GFF3032	0.34	+0.6
3,107,532	+		GFF3032	0.34	+0.7
3,107,551	+		GFF3032	0.35	+1.3
3,107,551	+		GFF3032	0.35	+0.3
3,107,551	+		GFF3032	0.35	+0.2
3,107,557	+		GFF3032	0.35	-1.4
3,107,559	-		GFF3032	0.35	+0.0
3,107,559	-		GFF3032	0.35	-0.1
3,107,565	-		GFF3032	0.36	-2.0
3,107,565	-		GFF3032	0.36	+0.2
3,107,565	-		GFF3032	0.36	+0.3
3,107,572	+		GFF3032	0.36	-1.0
3,107,578	+		GFF3032	0.36	-2.4
3,107,585	+		GFF3032	0.37	-1.1
3,107,585	+		GFF3032	0.37	-0.6
3,107,585	+		GFF3032	0.37	+0.1
3,107,586	-		GFF3032	0.37	+1.1
3,107,593	-		GFF3032	0.37	+0.5
3,107,593	-		GFF3032	0.37	-0.2
3,107,593	-		GFF3032	0.37	-0.3
3,107,593	-		GFF3032	0.37	-1.7
3,107,602	-		GFF3032	0.38	-1.0
3,107,602	-		GFF3032	0.38	-1.3
3,107,633	+		GFF3032	0.40	-1.8
3,107,642	+		GFF3032	0.40	-0.5
3,107,642	+		GFF3032	0.40	-1.2
3,107,650	-		GFF3032	0.41	+0.1
3,107,671	+		GFF3032	0.42	-1.2
3,107,671	+		GFF3032	0.42	+1.2
3,107,671	+		GFF3032	0.42	-1.3
3,107,671	+		GFF3032	0.42	+1.2
3,107,671	+		GFF3032	0.42	-0.2
3,107,671	+		GFF3032	0.42	-0.5
3,107,671	+		GFF3032	0.42	+0.5
3,107,674	-		GFF3032	0.42	+0.2
3,107,674	-		GFF3032	0.42	+0.4
3,107,674	-		GFF3032	0.42	+0.3
3,107,676	+		GFF3032	0.42	+0.2
3,107,679	-		GFF3032	0.42	-1.2
3,107,679	-		GFF3032	0.42	-0.0
3,107,679	-		GFF3032	0.42	-0.8
3,107,679	-		GFF3032	0.42	+1.2
3,107,679	-		GFF3032	0.42	-0.6
3,107,679	-		GFF3032	0.42	+1.0
3,107,679	-		GFF3032	0.42	-3.3
3,107,679	-		GFF3032	0.42	-0.9
3,107,679	-		GFF3032	0.42	-1.0
3,107,679	-		GFF3032	0.42	+0.7
3,107,684	-		GFF3032	0.42	+1.2
3,107,706	+		GFF3032	0.44	-0.2
3,107,706	+		GFF3032	0.44	-0.2
3,107,706	+		GFF3032	0.44	+0.6
3,107,708	+		GFF3032	0.44	-0.3
3,107,714	+		GFF3032	0.44	-0.6
3,107,731	-		GFF3032	0.45	-0.4
3,107,731	-		GFF3032	0.45	-1.2
3,107,736	-		GFF3032	0.45	+0.6
3,107,737	-		GFF3032	0.46	-0.9
3,107,742	+		GFF3032	0.46	-0.1
3,107,742	+		GFF3032	0.46	+0.4
3,107,742	+		GFF3032	0.46	+1.2
3,107,742	+		GFF3032	0.46	+0.2
3,107,750	-		GFF3032	0.46	+0.4
3,107,750	-		GFF3032	0.46	-0.9
3,107,750	-		GFF3032	0.46	-0.4
3,107,750	-		GFF3032	0.46	-0.3
3,107,775	+		GFF3032	0.48	-0.4
3,107,792	-		GFF3032	0.49	+0.2
3,107,798	-		GFF3032	0.49	-0.0
3,107,798	-		GFF3032	0.49	+0.8
3,107,814	+		GFF3032	0.50	-1.5
3,107,822	+		GFF3032	0.50	+1.6
3,107,822	-		GFF3032	0.50	-0.1
3,107,822	-		GFF3032	0.50	-0.1
3,107,857	+		GFF3032	0.52	-2.6
3,107,886	+		GFF3032	0.54	+1.4
3,107,894	+		GFF3032	0.55	-1.4
3,107,894	-		GFF3032	0.55	-0.8
3,107,913	+		GFF3032	0.56	+0.3
3,107,921	-		GFF3032	0.56	-1.6
3,107,923	+		GFF3032	0.56	-1.4
3,107,923	+		GFF3032	0.56	+0.9
3,107,931	-		GFF3032	0.57	-1.8
3,107,931	-		GFF3032	0.57	-2.2