Strain Fitness in Sphingobium sp. HT1-2 around GFF2905

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
2,965,923	+		GFF2904	0.23	+0.8
2,965,931	-		GFF2904	0.24	+1.7
2,965,931	-		GFF2904	0.24	-0.1
2,965,939	+		GFF2904	0.24	-0.8
2,965,941	+		GFF2904	0.25	-0.4
2,965,947	+		GFF2904	0.25	-0.9
2,966,019	+		GFF2904	0.31	+1.0
2,966,027	-		GFF2904	0.31	+1.0
2,966,041	+		GFF2904	0.32	+0.2
2,966,041	+		GFF2904	0.32	+0.6
2,966,049	-		GFF2904	0.33	-0.5
2,966,049	-		GFF2904	0.33	+0.4
2,966,049	-		GFF2904	0.33	-1.7
2,966,081	+		GFF2904	0.35	+0.9
2,966,081	+		GFF2904	0.35	+0.4
2,966,089	-		GFF2904	0.36	-0.1
2,966,104	+		GFF2904	0.37	+1.1
2,966,112	-		GFF2904	0.38	+0.1
2,966,142	-		GFF2904	0.40	+0.2
2,966,145	+		GFF2904	0.40	-0.1
2,966,161	+		GFF2904	0.41	+0.5
2,966,169	-		GFF2904	0.42	+0.2
2,966,171	+		GFF2904	0.42	+1.0
2,966,188	+		GFF2904	0.44	+0.2
2,966,188	+		GFF2904	0.44	+0.1
2,966,271	+		GFF2904	0.50	+0.7
2,966,278	+		GFF2904	0.50	-1.0
2,966,286	+		GFF2904	0.51	-1.2
2,966,288	+		GFF2904	0.51	+0.9
2,966,296	-		GFF2904	0.52	-0.1
2,966,302	+		GFF2904	0.52	+1.2
2,966,323	+		GFF2904	0.54	+0.4
2,966,323	+		GFF2904	0.54	-1.5
2,966,323	+		GFF2904	0.54	+1.0
2,966,323	+		GFF2904	0.54	-0.5
2,966,323	+		GFF2904	0.54	-0.3
2,966,323	+		GFF2904	0.54	+0.8
2,966,323	+		GFF2904	0.54	-0.6
2,966,323	+		GFF2904	0.54	-2.6
2,966,323	+		GFF2904	0.54	+2.2
2,966,331	-		GFF2904	0.54	-0.1
2,966,333	+		GFF2904	0.55	+0.2
2,966,335	-		GFF2904	0.55	+0.9
2,966,335	-		GFF2904	0.55	+0.0
2,966,340	+		GFF2904	0.55	+0.2
2,966,341	-		GFF2904	0.55	+0.6
2,966,346	-		GFF2904	0.56	+0.2
2,966,353	+		GFF2904	0.56	+0.2
2,966,381	-		GFF2904	0.58	+0.2
2,966,438	+		GFF2904	0.63	+0.1
2,966,443	+		GFF2904	0.63	-1.1
2,966,470	+		GFF2904	0.65	+0.7
2,966,515	+		GFF2904	0.69	+0.5
2,966,542	-		GFF2904	0.71	-0.3
2,966,578	+		GFF2904	0.73	-2.0
2,966,615	+		GFF2904	0.76	-0.4
2,966,621	+		GFF2904	0.77	+0.0
2,966,671	+		GFF2904	0.81	+0.2
2,966,679	-		GFF2904	0.81	+0.8
2,966,691	+		GFF2904	0.82	+1.0
2,966,695	+		GFF2904	0.82	-1.5
2,966,695	+		GFF2904	0.82	+0.0
2,966,703	-		GFF2904	0.83	-0.0
2,966,703	-		GFF2904	0.83	+1.2
2,966,703	-		GFF2904	0.83	-0.6
2,966,709	+		GFF2904	0.83	-0.8
2,966,709	+		GFF2904	0.83	-1.4
2,966,709	-		GFF2904	0.83	+0.4
2,966,722	-		GFF2904	0.84	+2.2
2,966,746	-		GFF2904	0.86	+0.2
2,966,751	-		GFF2904	0.87	+0.2
2,966,758	+		GFF2904	0.87	-0.8
2,966,771	+		GFF2904	0.88	+0.1
2,966,779	-		GFF2904	0.89	-1.3
2,966,805	-				+0.8
2,966,835	+				-0.1
2,966,869	+				-2.7
2,966,869	+				+0.4
2,966,877	-				-0.2
2,966,892	-				-0.3
2,966,892	-				-0.9
2,966,892	-				+0.0
2,966,894	+				-0.9
2,966,902	+				-0.3
2,966,920	+				+1.7
2,966,950	+				-0.3
2,966,950	+				-0.6
2,966,960	+				-0.3
2,966,965	+				-0.3
2,966,983	+				-1.1
2,966,991	-				+0.9
2,966,999	-				+0.1
2,967,007	-				-0.2
2,967,009	+				-0.0
2,967,009	+				+0.3
2,967,025	-		GFF2905	0.11	+0.4
2,967,038	+		GFF2905	0.13	-0.2
2,967,046	-		GFF2905	0.14	-0.9
2,967,090	+		GFF2905	0.18	+0.4
2,967,090	+		GFF2905	0.18	+0.2
2,967,098	-		GFF2905	0.19	-1.3
2,967,136	-		GFF2905	0.23	+0.2
2,967,136	-		GFF2905	0.23	+0.2
2,967,138	+		GFF2905	0.24	-0.1
2,967,140	-		GFF2905	0.24	-0.8
2,967,143	+		GFF2905	0.24	+1.5
2,967,146	-		GFF2905	0.25	+0.9
2,967,146	-		GFF2905	0.25	+0.6
2,967,151	-		GFF2905	0.25	-0.1
2,967,163	+		GFF2905	0.26	-1.0
2,967,171	-		GFF2905	0.27	-0.0
2,967,171	-		GFF2905	0.27	+0.1
2,967,171	-		GFF2905	0.27	-0.6
2,967,177	+		GFF2905	0.28	-1.8
2,967,177	-		GFF2905	0.28	+1.0
2,967,179	-		GFF2905	0.28	-0.5
2,967,201	-		GFF2905	0.31	-0.3
2,967,232	+		GFF2905	0.34	-0.1
2,967,235	-		GFF2905	0.34	-0.7
2,967,252	+		GFF2905	0.36	+0.4
2,967,252	+		GFF2905	0.36	+0.1
2,967,260	-		GFF2905	0.37	-1.5
2,967,272	+		GFF2905	0.38	+1.4
2,967,272	+		GFF2905	0.38	-1.1
2,967,287	+		GFF2905	0.40	+0.3
2,967,297	+		GFF2905	0.41	+0.4
2,967,376	+		GFF2905	0.50	-0.2
2,967,419	+		GFF2905	0.54	-0.5
2,967,433	+		GFF2905	0.56	-0.6
2,967,433	+		GFF2905	0.56	-0.7
2,967,433	+		GFF2905	0.56	+0.9
2,967,433	+		GFF2905	0.56	-0.1
2,967,440	+		GFF2905	0.57	-0.9
2,967,441	-		GFF2905	0.57	+0.8
2,967,441	-		GFF2905	0.57	-0.8
2,967,453	-		GFF2905	0.58	-2.6
2,967,469	-		GFF2905	0.60	+1.2
2,967,471	+		GFF2905	0.60	+1.2
2,967,479	-		GFF2905	0.61	-2.8
2,967,495	+		GFF2905	0.63	+0.9
2,967,501	+		GFF2905	0.63	+1.1
2,967,501	+		GFF2905	0.63	+0.0
2,967,501	+		GFF2905	0.63	-2.0
2,967,502	+		GFF2905	0.63	+0.4
2,967,508	+		GFF2905	0.64	+0.1
2,967,508	+		GFF2905	0.64	-1.9
2,967,509	-		GFF2905	0.64	+0.9
2,967,509	-		GFF2905	0.64	-0.5
2,967,510	-		GFF2905	0.64	+0.0
2,967,510	-		GFF2905	0.64	-0.7
2,967,516	-		GFF2905	0.65	+1.2
2,967,522	+		GFF2905	0.65	-0.8
2,967,522	+		GFF2905	0.65	-2.4
2,967,530	-		GFF2905	0.66	+0.8
2,967,549	-		GFF2905	0.68	-0.7
2,967,561	+		GFF2905	0.70	-0.6
2,967,630	+		GFF2905	0.77	+1.7
2,967,630	+		GFF2905	0.77	-0.4
2,967,630	+		GFF2905	0.77	-1.1
2,967,630	+		GFF2905	0.77	+0.7
2,967,630	+		GFF2905	0.77	-1.5
2,967,656	+		GFF2905	0.80	+0.8
2,967,661	+		GFF2905	0.81	-0.3
2,967,661	+		GFF2905	0.81	-0.4
2,967,661	+		GFF2905	0.81	+0.3
2,967,662	+		GFF2905	0.81	+1.1
2,967,662	+		GFF2905	0.81	+0.8
2,967,663	+		GFF2905	0.81	+0.2
2,967,669	-		GFF2905	0.81	+0.4
2,967,669	-		GFF2905	0.81	-1.8
2,967,745	+		GFF2905	0.90	+0.4
2,967,752	+				+0.3
2,967,752	-				+0.2
2,967,773	+				+0.1
2,967,857	-				-0.8
2,967,857	-				+0.2
2,967,862	-				+0.0
2,967,935	-				+0.7
2,967,940	-				+0.4
2,968,053	+		GFF2906	0.14	+0.7
2,968,081	+		GFF2906	0.16	+0.4
2,968,081	+		GFF2906	0.16	+0.8
2,968,081	+		GFF2906	0.16	+0.0
2,968,089	-		GFF2906	0.17	-0.5
2,968,193	+		GFF2906	0.24	-0.3
2,968,198	+		GFF2906	0.25	+0.8
2,968,198	+		GFF2906	0.25	+0.1
2,968,198	+		GFF2906	0.25	+0.4
2,968,206	-		GFF2906	0.25	-1.3
2,968,214	+		GFF2906	0.26	+0.6
2,968,214	+		GFF2906	0.26	+0.2
2,968,222	-		GFF2906	0.26	+0.6
2,968,222	-		GFF2906	0.26	+1.1
2,968,252	+		GFF2906	0.28	+1.1
2,968,252	+		GFF2906	0.28	+1.1
2,968,252	+		GFF2906	0.28	-0.9
2,968,263	+		GFF2906	0.29	+0.4
2,968,266	+		GFF2906	0.29	+0.2
2,968,268	+		GFF2906	0.30	+1.4
2,968,271	-		GFF2906	0.30	-1.0
2,968,274	-		GFF2906	0.30	+0.2
2,968,295	+		GFF2906	0.32	+1.6
2,968,295	+		GFF2906	0.32	+1.5
2,968,295	+		GFF2906	0.32	-0.3
2,968,295	+		GFF2906	0.32	+0.6
2,968,303	-		GFF2906	0.32	+1.4
2,968,317	+		GFF2906	0.33	+0.8
2,968,317	-		GFF2906	0.33	+0.8
2,968,319	+		GFF2906	0.33	-0.5
2,968,325	-		GFF2906	0.34	-2.8
2,968,327	-		GFF2906	0.34	+0.2
2,968,334	-		GFF2906	0.34	-0.9
2,968,335	-		GFF2906	0.34	-1.1
2,968,340	-		GFF2906	0.35	+0.3
2,968,357	+		GFF2906	0.36	-0.2
2,968,357	+		GFF2906	0.36	-0.2
2,968,379	+		GFF2906	0.38	+0.3
2,968,397	-		GFF2906	0.39	+0.7
2,968,397	-		GFF2906	0.39	+1.0
2,968,397	-		GFF2906	0.39	+0.7
2,968,402	+		GFF2906	0.39	+1.4
2,968,459	-		GFF2906	0.43	-0.8
2,968,459	-		GFF2906	0.43	-0.3
2,968,459	-		GFF2906	0.43	-0.7
2,968,459	-		GFF2906	0.43	-1.4
2,968,459	-		GFF2906	0.43	-0.3
2,968,468	+		GFF2906	0.44	-0.5
2,968,468	+		GFF2906	0.44	-0.3
2,968,492	+		GFF2906	0.46	-1.3
2,968,500	-		GFF2906	0.46	+0.5
2,968,500	-		GFF2906	0.46	+0.1
2,968,502	+		GFF2906	0.46	-1.0
2,968,502	+		GFF2906	0.46	+0.7
2,968,516	+		GFF2906	0.47	+0.4
2,968,520	+		GFF2906	0.48	+1.8
2,968,533	-		GFF2906	0.49	-0.3
2,968,548	-		GFF2906	0.50	+0.2
2,968,550	+		GFF2906	0.50	+0.3
2,968,553	-		GFF2906	0.50	+1.6
2,968,553	-		GFF2906	0.50	-0.5
2,968,595	-		GFF2906	0.53	-0.5
2,968,596	-		GFF2906	0.53	+0.2
2,968,596	-		GFF2906	0.53	+0.5
2,968,633	+		GFF2906	0.56	+2.0
2,968,641	-		GFF2906	0.56	-0.9
2,968,653	+		GFF2906	0.57	-0.8
2,968,661	-		GFF2906	0.58	+0.2
2,968,732	-		GFF2906	0.63	+1.2
2,968,744	+		GFF2906	0.64	-1.6
2,968,771	-		GFF2906	0.66	-0.8
2,968,803	-		GFF2906	0.68	-0.3