Strain Fitness in Sphingobium sp. HT1-2 around GFF2858

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
2,914,515	-		GFF2857	0.59	-0.7
2,914,519	+		GFF2857	0.60	-0.2
2,914,520	-		GFF2857	0.60	-0.0
2,914,520	-		GFF2857	0.60	-0.7
2,914,520	-		GFF2857	0.60	-0.5
2,914,520	-		GFF2857	0.60	-1.6
2,914,522	+		GFF2857	0.60	-1.2
2,914,524	+		GFF2857	0.60	-0.3
2,914,530	+		GFF2857	0.60	-0.5
2,914,555	+		GFF2857	0.61	-0.6
2,914,560	+		GFF2857	0.61	+1.0
2,914,560	-		GFF2857	0.61	-0.1
2,914,563	-		GFF2857	0.61	-0.5
2,914,563	-		GFF2857	0.61	-0.7
2,914,563	-		GFF2857	0.61	-2.4
2,914,563	-		GFF2857	0.61	-1.3
2,914,568	-		GFF2857	0.62	+0.7
2,914,582	-		GFF2857	0.62	+0.7
2,914,593	+		GFF2857	0.63	+0.2
2,914,601	-		GFF2857	0.63	+0.3
2,914,615	+		GFF2857	0.64	-0.1
2,914,625	+		GFF2857	0.64	+0.7
2,914,625	+		GFF2857	0.64	-2.0
2,914,633	-		GFF2857	0.65	+0.5
2,914,633	-		GFF2857	0.65	-0.4
2,914,633	-		GFF2857	0.65	-0.9
2,914,686	+		GFF2857	0.67	-2.5
2,914,690	+		GFF2857	0.67	-3.3
2,914,695	+		GFF2857	0.67	+1.1
2,914,701	-		GFF2857	0.67	-1.8
2,914,714	+		GFF2857	0.68	+1.0
2,914,722	-		GFF2857	0.68	-0.3
2,914,722	-		GFF2857	0.68	-0.2
2,914,722	-		GFF2857	0.68	-0.1
2,914,738	+		GFF2857	0.69	+0.6
2,914,740	+		GFF2857	0.69	+0.7
2,914,745	+		GFF2857	0.69	-0.5
2,914,746	-		GFF2857	0.69	-2.0
2,914,746	-		GFF2857	0.69	+0.5
2,914,750	+		GFF2857	0.70	-0.5
2,914,751	+		GFF2857	0.70	+0.3
2,914,753	-		GFF2857	0.70	+1.0
2,914,753	-		GFF2857	0.70	+0.1
2,914,756	+		GFF2857	0.70	-0.7
2,914,756	+		GFF2857	0.70	+1.2
2,914,756	+		GFF2857	0.70	-1.6
2,914,756	+		GFF2857	0.70	-0.9
2,914,757	-		GFF2857	0.70	+0.7
2,914,757	-		GFF2857	0.70	-0.2
2,914,758	-		GFF2857	0.70	-1.8
2,914,758	-		GFF2857	0.70	+0.6
2,914,759	-		GFF2857	0.70	+0.2
2,914,759	-		GFF2857	0.70	+0.5
2,914,764	-		GFF2857	0.70	-0.2
2,914,779	-		GFF2857	0.71	+0.5
2,914,788	+		GFF2857	0.71	-0.9
2,914,788	+		GFF2857	0.71	+0.2
2,914,788	+		GFF2857	0.71	-1.3
2,914,788	+		GFF2857	0.71	-1.4
2,914,788	+		GFF2857	0.71	+1.1
2,914,793	+		GFF2857	0.72	+1.3
2,914,796	-		GFF2857	0.72	-2.1
2,914,796	-		GFF2857	0.72	+0.4
2,914,796	-		GFF2857	0.72	-2.2
2,914,796	-		GFF2857	0.72	-0.6
2,914,796	-		GFF2857	0.72	-0.1
2,914,796	-		GFF2857	0.72	+1.5
2,914,796	-		GFF2857	0.72	+1.2
2,914,796	-		GFF2857	0.72	+0.6
2,914,801	-		GFF2857	0.72	+0.2
2,914,804	+		GFF2857	0.72	-2.6
2,914,807	-		GFF2857	0.72	-1.0
2,914,812	-		GFF2857	0.72	-2.8
2,914,837	+		GFF2857	0.73	-1.7
2,914,837	+		GFF2857	0.73	+0.0
2,914,837	+		GFF2857	0.73	-0.7
2,914,837	+		GFF2857	0.73	-0.3
2,914,843	-		GFF2857	0.74	-0.5
2,914,844	+		GFF2857	0.74	-0.7
2,914,844	+		GFF2857	0.74	+0.2
2,914,844	+		GFF2857	0.74	+0.6
2,914,845	-		GFF2857	0.74	+0.4
2,914,845	-		GFF2857	0.74	+0.4
2,914,845	-		GFF2857	0.74	-1.9
2,914,845	-		GFF2857	0.74	-0.1
2,914,845	-		GFF2857	0.74	+1.7
2,914,882	-		GFF2857	0.75	+0.8
2,914,887	-		GFF2857	0.76	+0.7
2,914,887	-		GFF2857	0.76	-1.3
2,914,887	-		GFF2857	0.76	-0.4
2,914,889	+		GFF2857	0.76	+0.4
2,914,889	+		GFF2857	0.76	+1.1
2,914,889	+		GFF2857	0.76	-0.5
2,914,889	+		GFF2857	0.76	-1.9
2,914,889	+		GFF2857	0.76	+0.4
2,914,889	+		GFF2857	0.76	-2.6
2,914,891	+		GFF2857	0.76	-1.5
2,914,891	+		GFF2857	0.76	+0.5
2,914,891	+		GFF2857	0.76	-1.6
2,914,891	+		GFF2857	0.76	+0.7
2,914,891	+		GFF2857	0.76	-0.2
2,914,891	+		GFF2857	0.76	-1.1
2,914,891	+		GFF2857	0.76	-0.3
2,914,894	-		GFF2857	0.76	+1.7
2,914,897	-		GFF2857	0.76	-0.4
2,914,897	-		GFF2857	0.76	-0.4
2,914,899	-		GFF2857	0.76	-1.3
2,914,899	-		GFF2857	0.76	+0.5
2,914,904	+		GFF2857	0.76	-0.9
2,914,904	+		GFF2857	0.76	-0.1
2,914,906	+		GFF2857	0.76	-3.1
2,914,911	+		GFF2857	0.77	-1.9
2,914,916	+		GFF2857	0.77	+0.7
2,914,916	+		GFF2857	0.77	-0.0
2,914,919	-		GFF2857	0.77	-1.6
2,914,919	-		GFF2857	0.77	-2.1
2,914,924	-		GFF2857	0.77	-0.6
2,914,924	-		GFF2857	0.77	-1.6
2,914,924	-		GFF2857	0.77	+0.8
2,914,955	+		GFF2857	0.79	-1.1
2,914,975	+		GFF2857	0.79	-0.4
2,914,975	+		GFF2857	0.79	+0.1
2,914,983	-		GFF2857	0.80	+0.4
2,914,993	+		GFF2857	0.80	-0.3
2,914,999	-		GFF2857	0.81	-2.1
2,915,003	+		GFF2857	0.81	+0.5
2,915,011	-		GFF2857	0.81	+0.4
2,915,012	-		GFF2857	0.81	-0.2
2,915,023	+		GFF2857	0.82	-0.1
2,915,049	-		GFF2857	0.83	-1.3
2,915,083	-		GFF2857	0.84	-0.0
2,915,088	+		GFF2857	0.84	+0.2
2,915,103	-		GFF2857	0.85	+1.4
2,915,132	+		GFF2857	0.86	-0.3
2,915,140	-		GFF2857	0.87	-0.6
2,915,144	-		GFF2857	0.87	-0.7
2,915,152	+		GFF2857	0.87	-0.8
2,915,160	-		GFF2857	0.88	-1.6
2,915,160	-		GFF2857	0.88	+1.2
2,915,171	+		GFF2857	0.88	-0.0
2,915,178	+		GFF2857	0.88	+1.2
2,915,186	+		GFF2857	0.89	-0.3
2,915,186	-		GFF2857	0.89	-0.2
2,915,214	+		GFF2857	0.90	-1.0
2,915,216	+				-1.1
2,915,235	+				+1.2
2,915,250	+				-0.7
2,915,250	+				-0.5
2,915,250	+				+0.7
2,915,250	+				+0.6
2,915,250	+				-1.5
2,915,255	+				-0.2
2,915,255	+				+0.0
2,915,258	-				+0.1
2,915,258	-				-0.2
2,915,263	-				-2.1
2,915,308	+				+0.6
2,915,324	-				-2.3
2,915,325	-				+0.7
2,915,325	-				-2.0
2,915,336	-				+0.3
2,915,336	-				+0.7
2,915,347	+				-0.4
2,915,347	+				-2.8
2,915,347	+				+0.7
2,915,355	+				+0.7
2,915,355	+				-0.0
2,915,355	+				-0.3
2,915,355	+				+0.0
2,915,355	-				+0.2
2,915,355	-				-0.7
2,915,355	-				-2.0
2,915,355	-				+1.1
2,915,396	-				+0.2
2,915,413	+				-1.5
2,915,426	-				-0.4
2,915,426	-				-0.1
2,915,426	-				-0.1
2,915,507	-				-0.7
2,915,512	-				-0.9
2,915,517	+				-0.5
2,915,521	-				-0.4
2,915,554	+				+0.6
2,915,554	-				-0.1
2,915,565	+				+0.2
2,915,569	+				-0.6
2,915,579	+				-0.1
2,915,579	+				+0.2
2,915,581	+				+0.8
2,915,581	+				-0.9
2,915,587	-				+0.7
2,915,587	-				-0.7
2,915,591	+				-2.1
2,915,591	+				-2.3
2,915,591	+				+1.0
2,915,594	-				-0.9
2,915,599	-		GFF2858	0.10	+1.0
2,915,673	-		GFF2858	0.19	-1.3
2,915,677	-		GFF2858	0.19	+0.6
2,915,680	+		GFF2858	0.20	+1.7
2,915,681	+		GFF2858	0.20	-0.2
2,915,690	+		GFF2858	0.21	-0.6
2,915,690	+		GFF2858	0.21	-1.3
2,915,715	+		GFF2858	0.24	-1.6
2,915,715	+		GFF2858	0.24	+0.2
2,915,723	-		GFF2858	0.25	-1.1
2,915,723	-		GFF2858	0.25	-0.1
2,915,723	-		GFF2858	0.25	+0.5
2,915,759	-		GFF2858	0.29	+1.2
2,915,760	+		GFF2858	0.29	-1.0
2,915,767	-		GFF2858	0.30	-1.5
2,915,780	-		GFF2858	0.31	-0.3
2,915,780	-		GFF2858	0.31	-1.0
2,915,780	-		GFF2858	0.31	-0.8
2,915,790	-		GFF2858	0.33	+0.5
2,915,844	-		GFF2858	0.39	-0.6
2,915,847	+		GFF2858	0.39	-0.4
2,915,848	+		GFF2858	0.39	+0.5
2,915,848	+		GFF2858	0.39	+0.5
2,915,854	+		GFF2858	0.40	+1.1
2,915,855	-		GFF2858	0.40	+0.1
2,915,856	-		GFF2858	0.40	+0.0
2,915,856	-		GFF2858	0.40	+0.8
2,915,856	-		GFF2858	0.40	-0.9
2,915,874	+		GFF2858	0.42	-0.5
2,915,892	+		GFF2858	0.45	+0.6
2,915,892	+		GFF2858	0.45	+0.3
2,915,903	+		GFF2858	0.46	-0.3
2,915,920	-		GFF2858	0.48	-0.1
2,915,949	+		GFF2858	0.51	+1.0
2,915,949	+		GFF2858	0.51	-3.0
2,915,949	+		GFF2858	0.51	-0.6
2,915,949	+		GFF2858	0.51	+1.1
2,915,949	+		GFF2858	0.51	-1.3
2,915,949	+		GFF2858	0.51	-2.1
2,915,949	+		GFF2858	0.51	+0.5
2,915,949	+		GFF2858	0.51	-0.2
2,915,957	-		GFF2858	0.52	-0.8
2,915,957	-		GFF2858	0.52	-0.5
2,915,957	-		GFF2858	0.52	-1.0
2,915,957	-		GFF2858	0.52	+0.2
2,915,957	-		GFF2858	0.52	+0.1
2,915,957	-		GFF2858	0.52	-1.3
2,915,970	+		GFF2858	0.54	+0.1
2,915,971	+		GFF2858	0.54	+0.2
2,915,982	+		GFF2858	0.55	-1.3
2,915,984	-		GFF2858	0.55	-0.2
2,916,008	+		GFF2858	0.58	+0.9
2,916,027	+		GFF2858	0.60	-3.0
2,916,027	+		GFF2858	0.60	-0.9
2,916,027	+		GFF2858	0.60	-1.1
2,916,035	-		GFF2858	0.61	-1.2
2,916,035	-		GFF2858	0.61	-0.1
2,916,035	-		GFF2858	0.61	-1.7
2,916,043	-		GFF2858	0.62	-0.6
2,916,052	+		GFF2858	0.63	-0.1
2,916,052	+		GFF2858	0.63	+1.3
2,916,052	+		GFF2858	0.63	-0.9
2,916,052	+		GFF2858	0.63	-0.8
2,916,052	+		GFF2858	0.63	+0.9
2,916,052	+		GFF2858	0.63	-1.6
2,916,052	+		GFF2858	0.63	-1.9
2,916,052	+		GFF2858	0.63	-0.8
2,916,052	+		GFF2858	0.63	-0.5
2,916,053	-		GFF2858	0.63	+0.1
2,916,060	-		GFF2858	0.64	-0.7
2,916,060	-		GFF2858	0.64	-0.7
2,916,060	-		GFF2858	0.64	-0.1
2,916,060	-		GFF2858	0.64	-1.9
2,916,060	-		GFF2858	0.64	-0.3
2,916,083	+		GFF2858	0.67	-0.4
2,916,085	+		GFF2858	0.67	+0.4
2,916,091	-		GFF2858	0.68	+0.6
2,916,091	-		GFF2858	0.68	-0.2
2,916,091	-		GFF2858	0.68	-0.5
2,916,091	-		GFF2858	0.68	-1.8
2,916,091	-		GFF2858	0.68	+1.0
2,916,091	-		GFF2858	0.68	-1.4
2,916,091	-		GFF2858	0.68	+0.6
2,916,096	+		GFF2858	0.69	+0.3
2,916,104	-		GFF2858	0.69	-1.8
2,916,104	-		GFF2858	0.69	+1.2
2,916,104	-		GFF2858	0.69	+0.4
2,916,104	-		GFF2858	0.69	-0.3
2,916,106	+		GFF2858	0.70	+0.6
2,916,106	+		GFF2858	0.70	+0.2
2,916,106	+		GFF2858	0.70	+1.0
2,916,106	+		GFF2858	0.70	+0.3
2,916,114	-		GFF2858	0.71	-0.3
2,916,114	-		GFF2858	0.71	-2.3
2,916,119	-		GFF2858	0.71	-0.3
2,916,168	+		GFF2858	0.77	+0.4
2,916,233	+		GFF2858	0.85	-0.9
2,916,241	-		GFF2858	0.86	+1.1
2,916,241	-		GFF2858	0.86	-1.2
2,916,241	-		GFF2858	0.86	+0.3
2,916,241	-		GFF2858	0.86	+0.0
2,916,241	-		GFF2858	0.86	-1.1
2,916,246	-		GFF2858	0.86	-0.3
2,916,253	+		GFF2858	0.87	+0.8
2,916,253	+		GFF2858	0.87	+1.6
2,916,261	-		GFF2858	0.88	-1.5
2,916,275	-		GFF2858	0.90	-0.8
2,916,294	+				+0.1
2,916,297	-				-1.0
2,916,304	+				-0.8
2,916,304	+				-0.3
2,916,332	-				-0.5
2,916,402	+				+0.2
2,916,402	+				-0.2
2,916,403	+				-0.0
2,916,404	+				-0.4
2,916,404	+				-0.3
2,916,404	+				-0.3
2,916,404	+				-1.5
2,916,404	+				-0.0
2,916,404	-				+0.2
2,916,410	-				+1.3
2,916,410	-				+0.5
2,916,412	-				+0.8
2,916,412	-				-0.3
2,916,412	-				-2.6
2,916,437	-				-2.1
2,916,449	+				+0.4
2,916,457	-				+0.8
2,916,462	-				+0.0
2,916,465	+				+0.8
2,916,465	+				+0.9
2,916,473	-				-0.8
2,916,491	-				-1.6
2,916,525	-		GFF2859	0.11	+0.7
2,916,542	+		GFF2859	0.12	+1.0
2,916,544	+		GFF2859	0.12	-1.9
2,916,550	-		GFF2859	0.13	-0.7
2,916,550	-		GFF2859	0.13	-0.7
2,916,550	-		GFF2859	0.13	-1.5
2,916,552	-		GFF2859	0.13	+0.3
2,916,552	-		GFF2859	0.13	-0.4
2,916,586	+		GFF2859	0.15	-1.1
2,916,586	+		GFF2859	0.15	-2.3
2,916,587	+		GFF2859	0.15	+0.0
2,916,594	-		GFF2859	0.16	-0.7
2,916,594	-		GFF2859	0.16	-0.6
2,916,594	-		GFF2859	0.16	-0.4
2,916,599	+		GFF2859	0.16	+1.2
2,916,609	+		GFF2859	0.17	-2.9
2,916,617	-		GFF2859	0.18	+0.3
2,916,617	-		GFF2859	0.18	-0.3
2,916,617	-		GFF2859	0.18	-0.3
2,916,617	-		GFF2859	0.18	-1.1
2,916,619	+		GFF2859	0.18	+1.1
2,916,619	+		GFF2859	0.18	+0.6
2,916,627	-		GFF2859	0.18	+0.8
2,916,627	-		GFF2859	0.18	-0.2
2,916,630	+		GFF2859	0.19	-0.3
2,916,630	+		GFF2859	0.19	-0.3
2,916,630	+		GFF2859	0.19	-1.5
2,916,630	+		GFF2859	0.19	+0.3
2,916,630	+		GFF2859	0.19	-0.0
2,916,630	+		GFF2859	0.19	-1.4
2,916,638	-		GFF2859	0.19	+0.5
2,916,638	-		GFF2859	0.19	-0.2
2,916,638	-		GFF2859	0.19	-0.6
2,916,640	+		GFF2859	0.19	-0.3
2,916,640	+		GFF2859	0.19	-1.1
2,916,640	+		GFF2859	0.19	-0.3
2,916,640	+		GFF2859	0.19	+0.1
2,916,640	+		GFF2859	0.19	-3.0
2,916,640	+		GFF2859	0.19	+0.8
2,916,640	+		GFF2859	0.19	+0.7
2,916,640	+		GFF2859	0.19	+0.7
2,916,640	+		GFF2859	0.19	+0.4
2,916,640	+		GFF2859	0.19	-0.4
2,916,640	+		GFF2859	0.19	+0.8
2,916,640	+		GFF2859	0.19	+1.4
2,916,640	+		GFF2859	0.19	-0.1
2,916,640	+		GFF2859	0.19	-0.2
2,916,640	+		GFF2859	0.19	+1.2
2,916,640	+		GFF2859	0.19	-0.7
2,916,640	+		GFF2859	0.19	-0.8
2,916,640	+		GFF2859	0.19	-1.2
2,916,640	+		GFF2859	0.19	+0.5
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2,916,648	-		GFF2859	0.20	-0.0
2,916,648	-		GFF2859	0.20	+0.1
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2,916,648	-		GFF2859	0.20	-1.8
2,916,648	-		GFF2859	0.20	-0.8
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2,916,648	-		GFF2859	0.20	+0.1
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2,916,648	-		GFF2859	0.20	+0.2
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2,916,648	-		GFF2859	0.20	+1.8
2,916,648	-		GFF2859	0.20	-1.9
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2,916,655	+		GFF2859	0.21	-0.5
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2,916,704	-		GFF2859	0.24	+0.1
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2,916,734	-		GFF2859	0.27	+0.4
2,916,742	-		GFF2859	0.27	+0.8
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2,916,771	+		GFF2859	0.30	-1.8
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2,916,771	+		GFF2859	0.30	+0.5
2,916,771	+		GFF2859	0.30	-0.1
2,916,771	+		GFF2859	0.30	-0.4
2,916,771	+		GFF2859	0.30	-0.2
2,916,771	+		GFF2859	0.30	+1.0
2,916,779	-		GFF2859	0.30	-1.5
2,916,779	-		GFF2859	0.30	-0.6
2,916,779	-		GFF2859	0.30	-0.1
2,916,779	-		GFF2859	0.30	-0.3
2,916,779	-		GFF2859	0.30	-0.2
2,916,783	-		GFF2859	0.30	+0.1
2,916,797	-		GFF2859	0.31	-2.0
2,916,812	+		GFF2859	0.33	+0.1
2,916,812	+		GFF2859	0.33	+0.2
2,916,819	-		GFF2859	0.33	-0.7
2,916,824	-		GFF2859	0.34	+1.7
2,916,837	+		GFF2859	0.35	-0.0
2,916,841	-		GFF2859	0.35	-0.9
2,916,859	+		GFF2859	0.36	-1.8
2,916,871	+		GFF2859	0.37	-2.1
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2,916,883	+		GFF2859	0.38	+0.2
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2,916,898	+		GFF2859	0.39	-0.0
2,916,899	+		GFF2859	0.39	-0.7
2,916,904	+		GFF2859	0.40	+1.7
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2,916,912	-		GFF2859	0.40	-0.3
2,916,918	+		GFF2859	0.41	-1.1
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2,916,987	+		GFF2859	0.46	-2.3
2,916,987	+		GFF2859	0.46	-2.5
2,917,027	-		GFF2859	0.49	-1.1
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2,917,044	+		GFF2859	0.50	-1.6
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2,917,079	+		GFF2859	0.53	-0.1
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2,917,087	-		GFF2859	0.54	-0.0
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2,917,123	+		GFF2859	0.56	+0.5
2,917,123	+		GFF2859	0.56	+0.2
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2,917,131	-		GFF2859	0.57	+0.6
2,917,165	+		GFF2859	0.60	+0.3
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2,917,225	+		GFF2859	0.64	-0.2
2,917,225	+		GFF2859	0.64	-1.8
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2,917,233	-		GFF2859	0.65	-2.3
2,917,233	-		GFF2859	0.65	-0.5
2,917,233	-		GFF2859	0.65	+1.0
2,917,233	-		GFF2859	0.65	-0.6
2,917,255	+		GFF2859	0.67	-0.8
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2,917,337	+		GFF2859	0.73	-1.5
2,917,337	+		GFF2859	0.73	+0.2
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2,917,345	-		GFF2859	0.73	+0.2
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2,917,345	-		GFF2859	0.73	-0.5
2,917,345	-		GFF2859	0.73	-0.3
2,917,361	-		GFF2859	0.75	+0.0