Strain Fitness in Sphingobium sp. HT1-2 around GFF2819

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
2,860,046	-		GFF2818	0.53	-0.5
2,860,077	+		GFF2818	0.55	+1.3
2,860,079	+		GFF2818	0.55	+0.0
2,860,089	+		GFF2818	0.56	+0.1
2,860,089	+		GFF2818	0.56	+0.7
2,860,089	+		GFF2818	0.56	+0.5
2,860,089	+		GFF2818	0.56	-1.5
2,860,089	+		GFF2818	0.56	-0.9
2,860,089	+		GFF2818	0.56	-0.4
2,860,097	-		GFF2818	0.56	+0.3
2,860,097	-		GFF2818	0.56	+0.3
2,860,097	-		GFF2818	0.56	+0.2
2,860,097	-		GFF2818	0.56	-1.6
2,860,097	-		GFF2818	0.56	-1.6
2,860,107	+		GFF2818	0.57	-0.6
2,860,116	-		GFF2818	0.57	+0.3
2,860,118	+		GFF2818	0.58	-2.0
2,860,125	-		GFF2818	0.58	+0.9
2,860,126	-		GFF2818	0.58	-0.2
2,860,155	+		GFF2818	0.60	-2.2
2,860,158	-		GFF2818	0.60	+0.8
2,860,160	+		GFF2818	0.60	-1.0
2,860,160	+		GFF2818	0.60	+0.4
2,860,160	+		GFF2818	0.60	+0.7
2,860,160	+		GFF2818	0.60	-0.2
2,860,160	+		GFF2818	0.60	-0.5
2,860,160	+		GFF2818	0.60	-0.1
2,860,160	+		GFF2818	0.60	-0.1
2,860,160	+		GFF2818	0.60	-0.4
2,860,160	+		GFF2818	0.60	-1.5
2,860,160	+		GFF2818	0.60	-0.4
2,860,168	-		GFF2818	0.61	-1.0
2,860,168	-		GFF2818	0.61	-0.2
2,860,168	-		GFF2818	0.61	+0.2
2,860,168	-		GFF2818	0.61	-0.3
2,860,168	-		GFF2818	0.61	-1.2
2,860,168	-		GFF2818	0.61	+0.1
2,860,168	-		GFF2818	0.61	-0.1
2,860,168	-		GFF2818	0.61	-0.6
2,860,171	+		GFF2818	0.61	-1.6
2,860,209	+		GFF2818	0.63	-2.8
2,860,209	+		GFF2818	0.63	-1.7
2,860,217	-		GFF2818	0.63	-0.8
2,860,222	-		GFF2818	0.64	-0.6
2,860,224	+		GFF2818	0.64	+0.8
2,860,224	+		GFF2818	0.64	-0.3
2,860,224	+		GFF2818	0.64	+0.9
2,860,224	+		GFF2818	0.64	-2.0
2,860,224	+		GFF2818	0.64	-0.4
2,860,226	+		GFF2818	0.64	+1.7
2,860,227	-		GFF2818	0.64	+0.7
2,860,232	-		GFF2818	0.64	-0.5
2,860,232	-		GFF2818	0.64	+0.1
2,860,234	-		GFF2818	0.64	+0.8
2,860,243	+		GFF2818	0.65	+0.6
2,860,248	+		GFF2818	0.65	-0.6
2,860,256	-		GFF2818	0.66	+0.6
2,860,267	+		GFF2818	0.66	-0.1
2,860,275	-		GFF2818	0.67	-0.4
2,860,301	+		GFF2818	0.68	-1.8
2,860,302	-		GFF2818	0.69	+0.2
2,860,318	-		GFF2818	0.69	+0.3
2,860,320	+		GFF2818	0.70	-0.2
2,860,320	+		GFF2818	0.70	+0.0
2,860,350	+		GFF2818	0.71	-0.6
2,860,350	+		GFF2818	0.71	+0.2
2,860,355	+		GFF2818	0.72	-2.4
2,860,358	-		GFF2818	0.72	+0.1
2,860,358	-		GFF2818	0.72	-0.7
2,860,358	-		GFF2818	0.72	-1.9
2,860,358	-		GFF2818	0.72	+0.1
2,860,386	+		GFF2818	0.74	-0.8
2,860,394	-		GFF2818	0.74	-0.5
2,860,394	-		GFF2818	0.74	-1.0
2,860,405	+		GFF2818	0.75	-2.5
2,860,441	-		GFF2818	0.77	+1.2
2,860,441	-		GFF2818	0.77	-1.1
2,860,456	-		GFF2818	0.78	+0.7
2,860,490	+		GFF2818	0.80	+1.1
2,860,498	-		GFF2818	0.80	-2.0
2,860,505	+		GFF2818	0.81	+0.7
2,860,505	+		GFF2818	0.81	-0.4
2,860,505	+		GFF2818	0.81	-1.6
2,860,505	+		GFF2818	0.81	-0.1
2,860,505	+		GFF2818	0.81	-0.1
2,860,505	+		GFF2818	0.81	-0.5
2,860,505	+		GFF2818	0.81	-0.2
2,860,505	+		GFF2818	0.81	-0.4
2,860,505	+		GFF2818	0.81	+0.0
2,860,505	+		GFF2818	0.81	-0.2
2,860,505	+		GFF2818	0.81	-0.4
2,860,505	+		GFF2818	0.81	-0.1
2,860,505	+		GFF2818	0.81	+0.1
2,860,505	+		GFF2818	0.81	-0.2
2,860,505	+		GFF2818	0.81	-0.1
2,860,509	+		GFF2818	0.81	+0.7
2,860,513	-		GFF2818	0.81	-1.1
2,860,513	-		GFF2818	0.81	-0.7
2,860,513	-		GFF2818	0.81	-2.8
2,860,513	-		GFF2818	0.81	+1.2
2,860,513	-		GFF2818	0.81	+0.8
2,860,513	-		GFF2818	0.81	-0.2
2,860,513	-		GFF2818	0.81	+0.2
2,860,518	+		GFF2818	0.81	+1.6
2,860,526	+		GFF2818	0.82	+0.2
2,860,534	-		GFF2818	0.82	-2.6
2,860,534	-		GFF2818	0.82	-2.0
2,860,540	-		GFF2818	0.83	-0.1
2,860,550	-		GFF2818	0.83	+0.2
2,860,555	+		GFF2818	0.84	-0.7
2,860,555	+		GFF2818	0.84	+0.5
2,860,555	+		GFF2818	0.84	-0.1
2,860,562	+		GFF2818	0.84	+0.9
2,860,563	-		GFF2818	0.84	+0.1
2,860,568	+		GFF2818	0.84	-0.9
2,860,572	-		GFF2818	0.85	-0.5
2,860,581	-		GFF2818	0.85	-1.1
2,860,595	+		GFF2818	0.86	-1.8
2,860,605	-		GFF2818	0.87	+0.6
2,860,628	+		GFF2818	0.88	+0.0
2,860,629	+		GFF2818	0.88	-0.0
2,860,649	-		GFF2818	0.89	-1.7
2,860,733	+				-0.7
2,860,734	+				-0.4
2,860,741	+				-0.0
2,860,746	+				-1.6
2,860,780	+				+0.8
2,860,780	+				+0.1
2,860,780	+				+1.3
2,860,788	-				+0.7
2,860,788	-				-0.5
2,860,788	-				-1.0
2,860,792	+				+0.3
2,860,841	+				+0.2
2,860,841	+				-0.3
2,860,841	+				-0.6
2,860,841	+				+0.5
2,860,841	+				-0.1
2,860,841	+				+0.2
2,860,841	+				-1.5
2,860,841	+				+0.3
2,860,841	+				-3.0
2,860,841	+				+0.6
2,860,841	+				-2.5
2,860,841	+				+1.4
2,860,841	+				+0.2
2,860,841	+				-0.5
2,860,841	+				+0.7
2,860,841	+				-0.4
2,860,849	-				-0.5
2,860,849	-				-2.1
2,860,849	-				+0.4
2,860,849	-				-0.2
2,860,849	-				+0.4
2,860,849	-				+0.5
2,860,849	-				-0.7
2,860,849	-				+0.4
2,860,849	-				-0.4
2,860,849	-				-0.1
2,860,849	-				+0.9
2,860,849	-				-1.2
2,860,849	-				-0.4
2,860,849	-				-0.0
2,860,849	-				-0.8
2,860,849	-				-0.3
2,860,849	-				-0.4
2,860,849	-				+1.1
2,860,849	-				+0.2
2,860,849	-				+0.1
2,860,849	-				+1.0
2,860,849	-				-0.5
2,860,849	-				-1.1
2,860,849	-				+1.4
2,860,849	-				-0.8
2,860,849	-				+0.1
2,860,849	-				-0.8
2,860,849	-				+0.4
2,860,849	-				-2.4
2,860,859	-				+0.2
2,860,885	-				-0.5
2,860,885	-				+0.4
2,860,924	+				+0.8
2,860,927	-				-0.7
2,860,939	+				-1.5
2,860,951	+				+1.2
2,860,951	+				+1.3
2,860,955	-				-0.5
2,860,959	-				-0.4
2,860,959	-				-1.0
2,860,959	-				-0.7
2,860,959	-				+0.1
2,860,959	-				+0.6
2,860,959	-				-2.1
2,860,959	-				+0.9
2,860,959	-				-0.0
2,860,959	-				-0.5
2,860,973	+				+1.0
2,860,981	-				-1.6
2,860,995	-				+0.4
2,861,000	-				+0.7
2,861,006	+				+0.5
2,861,036	+				-0.0
2,861,049	+				-0.3
2,861,049	+				+0.2
2,861,049	+				-1.4
2,861,049	+				+0.3
2,861,049	+				+0.3
2,861,049	+				-0.8
2,861,049	+				+1.2
2,861,054	+				-1.6
2,861,057	-				-0.2
2,861,057	-				-0.5
2,861,057	-				-0.4
2,861,057	-				-1.4
2,861,057	-				-1.6
2,861,057	-				+1.0
2,861,057	-				-0.4
2,861,057	-				-0.6
2,861,057	-				+1.5
2,861,057	-				-2.6
2,861,057	-				+0.2
2,861,057	-				-0.1
2,861,057	-				-0.4
2,861,059	+				+0.1
2,861,059	+				+0.0
2,861,059	+				-0.9
2,861,062	-				+0.3
2,861,064	+				-1.6
2,861,064	+				-1.2
2,861,067	-				+0.8
2,861,067	-				+1.0
2,861,068	+				+1.2
2,861,069	+				+0.9
2,861,086	-				-0.1
2,861,086	-				-0.4
2,861,086	-				-1.0
2,861,086	-				-0.6
2,861,086	-				-0.1
2,861,105	+				-0.3
2,861,113	-				+0.5
2,861,118	+				+0.3
2,861,118	+				-0.6
2,861,118	+				+1.2
2,861,118	+				+0.2
2,861,120	+				-0.6
2,861,126	+				-0.0
2,861,126	-				-0.4
2,861,164	+		GFF2819	0.14	+1.4
2,861,164	+		GFF2819	0.14	+1.0
2,861,180	+		GFF2819	0.16	-0.0
2,861,198	+		GFF2819	0.18	+0.2
2,861,210	+		GFF2819	0.19	-1.3
2,861,235	-		GFF2819	0.22	-0.5
2,861,235	-		GFF2819	0.22	-0.6
2,861,244	+		GFF2819	0.23	+0.1
2,861,244	+		GFF2819	0.23	+0.4
2,861,244	+		GFF2819	0.23	-1.5
2,861,245	-		GFF2819	0.23	-0.2
2,861,252	-		GFF2819	0.24	-0.6
2,861,252	-		GFF2819	0.24	-0.1
2,861,252	-		GFF2819	0.24	-2.1
2,861,262	-		GFF2819	0.25	-1.0
2,861,263	+		GFF2819	0.25	-0.9
2,861,263	+		GFF2819	0.25	-0.3
2,861,263	+		GFF2819	0.25	+0.4
2,861,271	-		GFF2819	0.26	-1.7
2,861,271	-		GFF2819	0.26	-3.1
2,861,273	+		GFF2819	0.26	-0.1
2,861,276	-		GFF2819	0.26	+0.9
2,861,281	-		GFF2819	0.27	-0.5
2,861,281	-		GFF2819	0.27	-1.1
2,861,281	-		GFF2819	0.27	+0.1
2,861,288	-		GFF2819	0.28	+0.5
2,861,297	+		GFF2819	0.29	-0.3
2,861,304	-		GFF2819	0.30	-0.5
2,861,304	-		GFF2819	0.30	-0.7
2,861,305	-		GFF2819	0.30	-0.4
2,861,305	-		GFF2819	0.30	-1.3
2,861,305	-		GFF2819	0.30	-0.5
2,861,305	-		GFF2819	0.30	-0.3
2,861,312	+		GFF2819	0.30	-0.8
2,861,320	+		GFF2819	0.31	-0.9
2,861,320	+		GFF2819	0.31	-0.1
2,861,328	-		GFF2819	0.32	-0.0
2,861,328	-		GFF2819	0.32	+1.0
2,861,328	-		GFF2819	0.32	-0.3
2,861,328	-		GFF2819	0.32	+1.8
2,861,328	-		GFF2819	0.32	-0.4
2,861,351	+		GFF2819	0.35	-2.3
2,861,354	-		GFF2819	0.35	+1.7
2,861,356	+		GFF2819	0.35	+0.9
2,861,376	-		GFF2819	0.38	-0.0
2,861,399	+		GFF2819	0.40	-0.4
2,861,405	-		GFF2819	0.41	-1.6
2,861,410	+		GFF2819	0.41	-1.9
2,861,410	+		GFF2819	0.41	-0.2
2,861,415	+		GFF2819	0.42	-1.4
2,861,425	+		GFF2819	0.43	-0.9
2,861,425	+		GFF2819	0.43	-1.1
2,861,425	+		GFF2819	0.43	-0.1
2,861,430	+		GFF2819	0.44	-0.5
2,861,433	-		GFF2819	0.44	-0.7
2,861,433	-		GFF2819	0.44	+0.5
2,861,440	+		GFF2819	0.45	-0.6
2,861,440	-		GFF2819	0.45	-0.2
2,861,457	+		GFF2819	0.47	-1.4
2,861,465	-		GFF2819	0.47	+0.3
2,861,484	+		GFF2819	0.50	-1.4
2,861,484	+		GFF2819	0.50	+0.2
2,861,489	+		GFF2819	0.50	-0.9
2,861,489	+		GFF2819	0.50	-0.6
2,861,489	+		GFF2819	0.50	-0.2
2,861,492	-		GFF2819	0.51	-0.1
2,861,494	+		GFF2819	0.51	+0.8
2,861,494	+		GFF2819	0.51	+1.0
2,861,497	-		GFF2819	0.51	-0.2
2,861,502	-		GFF2819	0.52	+0.0
2,861,515	-		GFF2819	0.53	+1.1
2,861,522	+		GFF2819	0.54	+0.0
2,861,525	-		GFF2819	0.54	-1.2
2,861,556	+		GFF2819	0.58	-0.8
2,861,561	+		GFF2819	0.58	+0.2
2,861,564	-		GFF2819	0.59	-0.3
2,861,632	-		GFF2819	0.66	-0.4
2,861,640	+		GFF2819	0.67	+0.5
2,861,664	-		GFF2819	0.70	-0.7
2,861,675	+		GFF2819	0.71	+1.1
2,861,679	-		GFF2819	0.71	-2.1
2,861,721	+		GFF2819	0.76	-0.2
2,861,721	+		GFF2819	0.76	+0.3
2,861,721	-		GFF2819	0.76	-1.1
2,861,729	-		GFF2819	0.77	-0.7
2,861,731	+		GFF2819	0.77	+0.0
2,861,731	-		GFF2819	0.77	+0.2
2,861,734	-		GFF2819	0.77	-0.8
2,861,739	+		GFF2819	0.78	-1.5
2,861,739	+		GFF2819	0.78	-0.1
2,861,739	+		GFF2819	0.78	+0.2
2,861,739	+		GFF2819	0.78	+0.5
2,861,739	+		GFF2819	0.78	+0.9
2,861,744	+		GFF2819	0.79	+1.2
2,861,747	-		GFF2819	0.79	+0.3
2,861,747	-		GFF2819	0.79	+0.2
2,861,747	-		GFF2819	0.79	+0.0
2,861,747	-		GFF2819	0.79	-0.1
2,861,751	-		GFF2819	0.79	+1.3
2,861,751	-		GFF2819	0.79	-0.5
2,861,751	-		GFF2819	0.79	-0.4
2,861,753	-		GFF2819	0.80	-0.4
2,861,766	+		GFF2819	0.81	-0.5
2,861,766	+		GFF2819	0.81	-0.8
2,861,766	+		GFF2819	0.81	+0.4
2,861,766	-		GFF2819	0.81	-0.4
2,861,774	-		GFF2819	0.82	+0.7
2,861,774	-		GFF2819	0.82	-0.1
2,861,774	-		GFF2819	0.82	+0.7
2,861,774	-		GFF2819	0.82	+0.5
2,861,776	+		GFF2819	0.82	-1.1
2,861,776	-		GFF2819	0.82	+1.2
2,861,776	-		GFF2819	0.82	-1.2
2,861,779	-		GFF2819	0.82	+1.4
2,861,794	+		GFF2819	0.84	-0.3
2,861,817	-		GFF2819	0.87	-0.5
2,861,843	+		GFF2819	0.90	+0.1
2,861,861	+				+0.6
2,861,862	+				-1.0
2,861,866	+				-1.7
2,861,869	-				+1.0
2,861,873	+				-0.9
2,861,873	+				-0.1
2,861,873	+				-0.8
2,861,873	+				-0.6
2,861,881	-				-1.5
2,861,881	-				-0.3
2,861,881	-				-1.8
2,861,881	-				-1.3
2,861,881	-				-1.5
2,861,888	-				-0.9
2,861,888	-				-0.1
2,861,890	+				-0.2
2,861,926	-				+0.2
2,861,969	+				+0.4
2,861,971	+				-1.1
2,861,971	+				-1.1
2,861,976	-				-0.3
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2,861,979	-				-0.5
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2,862,065	+				+0.6
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2,862,181	+		GFF2820	0.10	+1.1
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2,862,252	-		GFF2820	0.19	-1.9
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2,862,329	-		GFF2820	0.29	-1.8
2,862,359	-		GFF2820	0.33	-1.7
2,862,366	+		GFF2820	0.34	-0.1
2,862,382	-		GFF2820	0.36	-0.1
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2,862,689	+		GFF2820	0.74	-0.6
2,862,736	+		GFF2820	0.80	-1.6
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2,862,744	-		GFF2820	0.81	-0.3
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2,862,750	-		GFF2820	0.82	-1.3
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2,862,779	+		GFF2820	0.86	-0.4
2,862,779	+		GFF2820	0.86	+0.1
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2,862,789	+		GFF2820	0.87	-0.7
2,862,791	+		GFF2820	0.87	-0.0
2,862,791	+		GFF2820	0.87	-0.8
2,862,796	+		GFF2820	0.88	-1.6
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2,862,796	+		GFF2820	0.88	-0.8
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2,862,797	-		GFF2820	0.88	-0.0
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2,862,819	+				+0.5
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