Strain Fitness in Sphingobium sp. HT1-2 around GFF2815

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
2,855,090	+		GFF2813	0.42	-0.2
2,855,136	+		GFF2813	0.45	-0.6
2,855,138	-		GFF2813	0.46	+1.2
2,855,138	-		GFF2813	0.46	+0.8
2,855,144	+		GFF2813	0.46	-0.5
2,855,144	-		GFF2813	0.46	-0.5
2,855,146	+		GFF2813	0.46	+0.6
2,855,146	+		GFF2813	0.46	-0.6
2,855,154	-		GFF2813	0.47	-1.9
2,855,154	-		GFF2813	0.47	+0.4
2,855,163	-		GFF2813	0.48	+0.1
2,855,183	-		GFF2813	0.49	-1.5
2,855,183	-		GFF2813	0.49	-0.8
2,855,183	-		GFF2813	0.49	-0.8
2,855,218	+		GFF2813	0.52	+0.8
2,855,218	+		GFF2813	0.52	-0.5
2,855,218	+		GFF2813	0.52	+0.5
2,855,218	+		GFF2813	0.52	-0.4
2,855,226	-		GFF2813	0.53	+0.3
2,855,226	-		GFF2813	0.53	-0.3
2,855,228	+		GFF2813	0.53	+0.3
2,855,241	-		GFF2813	0.54	+0.0
2,855,300	-		GFF2813	0.59	+1.4
2,855,333	-		GFF2813	0.62	-0.2
2,855,339	+		GFF2813	0.62	+0.2
2,855,347	-		GFF2813	0.63	+0.9
2,855,348	-		GFF2813	0.63	-1.0
2,855,361	+		GFF2813	0.64	-0.3
2,855,443	-		GFF2813	0.71	+0.4
2,855,443	-		GFF2813	0.71	-0.3
2,855,443	-		GFF2813	0.71	-0.7
2,855,585	-		GFF2813	0.83	-0.1
2,855,593	-		GFF2813	0.83	-2.1
2,855,607	-		GFF2813	0.85	-0.2
2,855,608	+		GFF2813	0.85	+0.6
2,855,658	+		GFF2813	0.89	-0.4
2,855,705	-				+0.2
2,855,724	-				-1.8
2,855,743	+				-0.3
2,855,754	+				-0.6
2,855,763	-				+1.3
2,855,765	+				-0.6
2,855,765	+				-0.0
2,855,775	-				+0.7
2,855,781	+				+0.4
2,855,781	+				+0.0
2,855,781	+				+1.0
2,855,781	+				+1.0
2,855,782	+				-1.2
2,855,789	-				-0.5
2,855,789	-				+1.5
2,855,789	-				+0.7
2,855,789	-				+1.0
2,855,789	-				+1.7
2,855,800	+				+0.8
2,855,804	-				+0.6
2,855,806	-				-1.2
2,855,808	-				-0.6
2,855,808	-				+0.9
2,855,815	+				-0.2
2,855,819	-				+1.5
2,855,849	+		GFF2814	0.19	+0.8
2,855,860	+		GFF2814	0.23	-0.5
2,855,883	-		GFF2814	0.30	+0.8
2,855,895	-		GFF2814	0.34	-0.5
2,855,920	+		GFF2814	0.42	-0.2
2,855,930	-		GFF2814	0.46	+0.4
2,855,938	+		GFF2814	0.48	+0.5
2,855,980	-		GFF2814	0.62	+0.9
2,855,980	-		GFF2814	0.62	-2.3
2,855,980	-		GFF2814	0.62	-1.8
2,855,981	+		GFF2814	0.62	+0.4
2,855,987	+		GFF2814	0.64	+0.1
2,856,013	-		GFF2814	0.72	-0.3
2,856,018	-		GFF2814	0.74	+0.9
2,856,041	+		GFF2814	0.82	-0.3
2,856,041	+		GFF2814	0.82	+1.2
2,856,041	+		GFF2814	0.82	+0.4
2,856,041	+		GFF2814	0.82	+0.1
2,856,041	+		GFF2814	0.82	-0.8
2,856,041	+		GFF2814	0.82	+0.2
2,856,041	+		GFF2814	0.82	+0.1
2,856,041	+		GFF2814	0.82	+2.2
2,856,041	+		GFF2814	0.82	-1.4
2,856,041	+		GFF2814	0.82	-0.0
2,856,043	-		GFF2814	0.82	+2.0
2,856,049	-		GFF2814	0.84	+0.1
2,856,049	-		GFF2814	0.84	-0.1
2,856,049	-		GFF2814	0.84	-0.4
2,856,049	-		GFF2814	0.84	+1.8
2,856,049	-		GFF2814	0.84	-1.3
2,856,049	-		GFF2814	0.84	+1.7
2,856,049	-		GFF2814	0.84	+1.7
2,856,049	-		GFF2814	0.84	-1.6
2,856,049	-		GFF2814	0.84	-0.3
2,856,049	-		GFF2814	0.84	-2.0
2,856,062	-		GFF2814	0.88	-1.1
2,856,068	-				+1.2
2,856,083	-				+0.7
2,856,108	-				+0.6
2,856,119	-				-0.8
2,856,126	-				-0.4
2,856,131	-				+0.5
2,856,156	-				-0.9
2,856,161	-				-1.5
2,856,172	-				+0.7
2,856,198	+		GFF2815	0.12	+0.7
2,856,198	+		GFF2815	0.12	-1.7
2,856,198	+		GFF2815	0.12	-1.7
2,856,206	-		GFF2815	0.13	+1.2
2,856,206	-		GFF2815	0.13	+0.0
2,856,232	+		GFF2815	0.16	-0.3
2,856,240	-		GFF2815	0.17	+0.3
2,856,240	-		GFF2815	0.17	-0.1
2,856,240	-		GFF2815	0.17	-0.5
2,856,240	-		GFF2815	0.17	-0.3
2,856,240	-		GFF2815	0.17	-0.5
2,856,240	-		GFF2815	0.17	-0.2
2,856,246	-		GFF2815	0.17	+0.5
2,856,247	-		GFF2815	0.17	+0.6
2,856,247	-		GFF2815	0.17	+0.1
2,856,279	-		GFF2815	0.21	-1.7
2,856,303	+		GFF2815	0.23	+0.6
2,856,310	+		GFF2815	0.24	+0.6
2,856,310	+		GFF2815	0.24	+0.4
2,856,318	-		GFF2815	0.25	-0.2
2,856,318	-		GFF2815	0.25	+1.2
2,856,318	-		GFF2815	0.25	-1.9
2,856,318	-		GFF2815	0.25	+0.2
2,856,318	-		GFF2815	0.25	-0.2
2,856,335	-		GFF2815	0.27	+0.7
2,856,350	-		GFF2815	0.29	+0.6
2,856,454	+		GFF2815	0.40	+0.7
2,856,458	+		GFF2815	0.40	+0.9
2,856,458	+		GFF2815	0.40	-0.6
2,856,466	-		GFF2815	0.41	-0.0
2,856,485	+		GFF2815	0.43	+0.2
2,856,517	+		GFF2815	0.47	-0.8
2,856,633	+		GFF2815	0.60	+0.9
2,856,665	-		GFF2815	0.63	+2.0
2,856,669	+		GFF2815	0.64	+0.9
2,856,669	+		GFF2815	0.64	+0.4
2,856,679	+		GFF2815	0.65	-0.9
2,856,679	+		GFF2815	0.65	-0.6
2,856,681	+		GFF2815	0.65	-2.5
2,856,681	+		GFF2815	0.65	-0.2
2,856,681	+		GFF2815	0.65	+0.7
2,856,735	-		GFF2815	0.71	-0.1
2,856,744	-		GFF2815	0.72	+1.2
2,856,784	-		GFF2815	0.76	-0.6
2,856,806	+		GFF2815	0.79	+1.1
2,856,806	+		GFF2815	0.79	+1.7
2,856,806	+		GFF2815	0.79	+0.6
2,856,814	-		GFF2815	0.80	+0.6
2,856,814	-		GFF2815	0.80	+0.5
2,856,819	-		GFF2815	0.80	-0.6
2,856,848	+		GFF2815	0.83	+0.2
2,856,848	+		GFF2815	0.83	+0.7
2,856,856	-		GFF2815	0.84	+0.4
2,856,912	-				-0.7
2,856,913	-				-1.2
2,856,923	+				-0.0
2,856,975	+				+0.8
2,856,975	+				+0.7
2,856,983	-				-1.4
2,857,002	+				-1.2
2,857,020	+				+1.7
2,857,020	+				-0.3
2,857,020	+				-0.5
2,857,028	-				+2.0
2,857,080	-				+0.6
2,857,080	-				-0.2
2,857,080	-				-0.6
2,857,098	-				+0.0
2,857,098	-				-1.7
2,857,098	-				+0.2
2,857,121	+				+1.2
2,857,121	+				+0.6
2,857,121	+				+0.3
2,857,121	+				-0.0
2,857,121	+				-0.3
2,857,121	+				-0.3
2,857,121	+				+1.6
2,857,129	-				+0.6
2,857,129	-				-0.0
2,857,129	-				-1.3
2,857,129	-				+0.1
2,857,129	-				-0.4
2,857,129	-				-1.1
2,857,129	-				-1.8
2,857,129	-				+0.3
2,857,129	-				-1.8
2,857,131	+				+0.7
2,857,134	-				+0.9
2,857,139	-				-1.0
2,857,144	-				+0.6
2,857,150	-				+0.8
2,857,151	-				-0.6
2,857,157	+				+0.2
2,857,161	+				-2.5
2,857,165	-		GFF2816	0.10	+0.6
2,857,169	-		GFF2816	0.11	+0.6
2,857,169	-		GFF2816	0.11	-2.0
2,857,195	-		GFF2816	0.14	-0.1
2,857,214	-		GFF2816	0.17	-0.1
2,857,241	+		GFF2816	0.20	+1.5
2,857,261	+		GFF2816	0.23	+0.5
2,857,261	+		GFF2816	0.23	-1.0
2,857,262	+		GFF2816	0.23	+0.1
2,857,262	+		GFF2816	0.23	-0.7
2,857,269	-		GFF2816	0.24	-0.7
2,857,364	-		GFF2816	0.37	+1.2
2,857,369	-		GFF2816	0.38	-0.6
2,857,374	-		GFF2816	0.39	+1.0
2,857,433	-		GFF2816	0.47	+0.5
2,857,436	-		GFF2816	0.47	-1.8
2,857,436	-		GFF2816	0.47	+2.9
2,857,443	+		GFF2816	0.48	-1.8
2,857,443	+		GFF2816	0.48	-0.7
2,857,451	-		GFF2816	0.49	+0.7
2,857,451	-		GFF2816	0.49	-0.1
2,857,469	+		GFF2816	0.52	+0.1
2,857,478	+		GFF2816	0.53	-2.3
2,857,500	+		GFF2816	0.56	+1.4
2,857,508	-		GFF2816	0.57	-0.5
2,857,508	-		GFF2816	0.57	+0.1
2,857,508	-		GFF2816	0.57	-0.3
2,857,547	-		GFF2816	0.62	-0.1
2,857,624	+		GFF2816	0.73	+0.9
2,857,627	+		GFF2816	0.73	+0.2
2,857,645	-		GFF2816	0.76	+0.1
2,857,645	-		GFF2816	0.76	-0.6
2,857,684	-		GFF2816	0.81	+2.2
2,857,699	+		GFF2816	0.83	+1.5
2,857,707	-		GFF2816	0.84	-0.0
2,857,727	+		GFF2816	0.87	+0.1
2,857,727	+		GFF2816	0.87	+1.5
2,857,735	-		GFF2816	0.88	-0.1
2,857,744	+		GFF2816	0.89	+0.3
2,857,747	+		GFF2816	0.90	+0.7
2,857,754	+				-0.8
2,857,762	-				-0.1
2,857,793	+				-0.5
2,857,799	+				+0.9
2,857,799	+				-0.8
2,857,810	-				-1.2
2,857,813	-				+0.5
2,857,824	+				+0.4
2,857,824	+				+0.6
2,857,832	-				-0.1
2,857,832	-				-0.8
2,857,838	-				+1.2
2,857,846	+				+0.1
2,857,849	-				-1.6
2,857,850	+				-0.7
2,857,850	+				+0.6
2,857,850	+				+1.6
2,857,850	+				+0.2
2,857,850	+				-0.9
2,857,854	-				-0.1
2,857,858	-				-1.0
2,857,858	-				+0.7
2,857,875	-				+0.4
2,857,888	+				-0.4
2,857,889	+				+1.1
2,857,899	+				-2.1
2,857,899	+				-0.6
2,857,899	+				-2.8
2,857,907	-				-0.2
2,857,925	+				-0.6
2,857,934	+				-0.6
2,857,943	+		GFF2817	0.10	-1.2
2,857,943	+		GFF2817	0.10	-0.8
2,857,951	-		GFF2817	0.11	+0.6
2,857,951	-		GFF2817	0.11	-2.1
2,857,951	-		GFF2817	0.11	+0.9
2,857,956	-		GFF2817	0.11	-0.6
2,857,987	+		GFF2817	0.14	-0.1