Strain Fitness in Sphingobium sp. HT1-2 around GFF2809

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
2,849,870	+		GFF2808	0.72	+0.3
2,849,870	+		GFF2808	0.72	-0.6
2,849,885	-		GFF2808	0.73	-1.3
2,849,891	+		GFF2808	0.73	+0.9
2,849,891	+		GFF2808	0.73	+0.4
2,849,891	+		GFF2808	0.73	+0.4
2,849,891	+		GFF2808	0.73	-0.3
2,849,896	+		GFF2808	0.73	+0.3
2,849,899	-		GFF2808	0.73	-1.1
2,849,899	-		GFF2808	0.73	-0.6
2,849,899	-		GFF2808	0.73	+0.5
2,849,899	-		GFF2808	0.73	-1.3
2,849,901	+		GFF2808	0.73	+0.3
2,849,912	+		GFF2808	0.74	-0.6
2,849,920	-		GFF2808	0.74	-1.8
2,849,944	+		GFF2808	0.75	-1.9
2,849,949	+		GFF2808	0.75	+0.2
2,849,949	+		GFF2808	0.75	-1.8
2,849,949	+		GFF2808	0.75	+0.2
2,849,949	+		GFF2808	0.75	-1.7
2,849,949	+		GFF2808	0.75	-0.6
2,849,949	+		GFF2808	0.75	-0.6
2,849,949	+		GFF2808	0.75	+0.8
2,849,949	+		GFF2808	0.75	-2.8
2,849,949	+		GFF2808	0.75	-0.6
2,849,949	+		GFF2808	0.75	-3.1
2,849,957	-		GFF2808	0.75	-0.4
2,849,957	-		GFF2808	0.75	+1.9
2,849,957	-		GFF2808	0.75	+0.1
2,849,957	-		GFF2808	0.75	+0.3
2,849,957	-		GFF2808	0.75	-0.1
2,849,957	-		GFF2808	0.75	+0.4
2,849,957	-		GFF2808	0.75	-1.4
2,849,957	-		GFF2808	0.75	-1.4
2,849,957	-		GFF2808	0.75	+0.1
2,849,957	-		GFF2808	0.75	-2.1
2,849,957	-		GFF2808	0.75	-2.3
2,849,957	-		GFF2808	0.75	+0.5
2,849,957	-		GFF2808	0.75	+1.0
2,849,957	-		GFF2808	0.75	+0.5
2,849,957	-		GFF2808	0.75	-0.7
2,849,957	-		GFF2808	0.75	+1.5
2,849,982	-		GFF2808	0.76	-2.3
2,849,999	-		GFF2808	0.77	-0.7
2,850,005	+		GFF2808	0.77	-1.1
2,850,015	+		GFF2808	0.77	-1.6
2,850,113	-		GFF2808	0.80	-0.9
2,850,113	-		GFF2808	0.80	+0.4
2,850,115	+		GFF2808	0.81	-0.4
2,850,115	+		GFF2808	0.81	+0.2
2,850,115	+		GFF2808	0.81	-2.4
2,850,115	+		GFF2808	0.81	-0.9
2,850,115	+		GFF2808	0.81	-0.2
2,850,115	+		GFF2808	0.81	-2.1
2,850,115	+		GFF2808	0.81	-0.3
2,850,123	-		GFF2808	0.81	-0.3
2,850,148	+		GFF2808	0.82	-0.1
2,850,148	+		GFF2808	0.82	-0.7
2,850,183	+		GFF2808	0.83	-1.1
2,850,191	-		GFF2808	0.83	-1.3
2,850,219	-		GFF2808	0.84	-0.4
2,850,224	+		GFF2808	0.84	-0.4
2,850,229	+		GFF2808	0.84	-0.2
2,850,240	+		GFF2808	0.85	-2.0
2,850,240	+		GFF2808	0.85	-0.5
2,850,248	-		GFF2808	0.85	-0.4
2,850,283	+		GFF2808	0.86	-1.6
2,850,313	-		GFF2808	0.87	-0.3
2,850,325	+		GFF2808	0.88	+0.6
2,850,346	+		GFF2808	0.88	+1.1
2,850,346	+		GFF2808	0.88	-0.7
2,850,355	+		GFF2808	0.88	-0.8
2,850,363	-		GFF2808	0.89	-1.2
2,850,363	-		GFF2808	0.89	-0.7
2,850,369	+		GFF2808	0.89	-0.7
2,850,377	-		GFF2808	0.89	+0.3
2,850,377	-		GFF2808	0.89	+0.2
2,850,377	-		GFF2808	0.89	-0.6
2,850,377	-		GFF2808	0.89	-1.4
2,850,389	+		GFF2808	0.90	-0.4
2,850,394	+		GFF2808	0.90	+0.5
2,850,397	+		GFF2808	0.90	-0.6
2,850,402	+				+0.2
2,850,405	-				-0.5
2,850,405	-				-0.4
2,850,410	-				+0.4
2,850,412	+				-2.1
2,850,420	-				+0.3
2,850,420	-				+0.1
2,850,425	+				+0.7
2,850,425	-				+0.2
2,850,425	-				-0.3
2,850,468	+				+0.2
2,850,520	+				-0.6
2,850,520	+				+0.1
2,850,533	-				-0.2
2,850,533	-				-0.9
2,850,553	+				+0.8
2,850,556	-				+0.3
2,850,558	-				+0.8
2,850,561	-				+0.1
2,850,579	+				-0.1
2,850,579	+				+0.3
2,850,579	+				+0.8
2,850,587	-				-1.4
2,850,587	-				+1.0
2,850,587	-				+0.5
2,850,587	-				-0.5
2,850,587	-				-2.4
2,850,587	-				+0.7
2,850,622	+				+1.4
2,850,622	-				-1.0
2,850,643	+				+0.1
2,850,643	+				+0.2
2,850,643	+				-1.0
2,850,644	+				+1.6
2,850,646	-				-1.4
2,850,683	+				-2.1
2,850,716	-				-1.0
2,850,733	+				+0.6
2,850,733	+				-2.3
2,850,734	+				-0.3
2,850,734	+				-1.2
2,850,739	+				+0.6
2,850,739	+				-1.8
2,850,739	+				+1.3
2,850,739	+				+0.2
2,850,739	+				+0.9
2,850,739	+				-0.5
2,850,739	+				+1.1
2,850,739	+				-0.3
2,850,739	+				+0.9
2,850,739	+				-0.6
2,850,739	+				+0.3
2,850,739	+				-0.4
2,850,747	-				-2.5
2,850,747	-				-0.7
2,850,747	-				+0.5
2,850,747	-				+0.1
2,850,747	-				-0.3
2,850,747	-				+1.5
2,850,747	-				+0.2
2,850,747	-				-1.7
2,850,766	-				-1.7
2,850,766	-				+0.7
2,850,777	+				+0.4
2,850,805	+				-1.2
2,850,805	+				+1.1
2,850,805	+				-2.3
2,850,805	+				-1.1
2,850,813	-				-2.8
2,850,813	-				+0.7
2,850,813	-				-0.9
2,850,813	-				-1.3
2,850,813	-				-0.5
2,850,813	-				-0.2
2,850,823	+				-1.4
2,850,823	+				+0.9
2,850,840	+				+0.7
2,850,896	+				-0.7
2,850,896	+				-1.5
2,850,897	-				-2.5
2,850,904	-				-0.5
2,850,904	-				+1.2
2,850,918	+		GFF2809	0.11	+1.7
2,850,952	+		GFF2809	0.17	-0.4
2,850,960	-		GFF2809	0.19	+0.1
2,850,970	+		GFF2809	0.21	-0.5
2,850,971	+		GFF2809	0.21	-0.1
2,850,971	+		GFF2809	0.21	+0.7
2,850,979	-		GFF2809	0.22	-0.1
2,850,979	-		GFF2809	0.22	-0.4
2,850,979	-		GFF2809	0.22	+1.3
2,850,984	-		GFF2809	0.23	+0.1
2,850,984	-		GFF2809	0.23	-0.5
2,850,989	-		GFF2809	0.24	-1.5
2,851,045	+		GFF2809	0.35	-1.1
2,851,074	+		GFF2809	0.40	+1.0
2,851,123	-		GFF2809	0.49	+1.7
2,851,130	-		GFF2809	0.50	+1.3
2,851,145	+		GFF2809	0.53	+0.2
2,851,153	-		GFF2809	0.55	+0.2
2,851,153	-		GFF2809	0.55	-1.6
2,851,153	-		GFF2809	0.55	-0.4
2,851,200	+		GFF2809	0.63	-1.1
2,851,210	+		GFF2809	0.65	-2.0
2,851,240	-		GFF2809	0.71	-0.2
2,851,246	+		GFF2809	0.72	+1.0
2,851,254	-		GFF2809	0.73	-1.6
2,851,254	-		GFF2809	0.73	-2.0
2,851,261	+		GFF2809	0.74	+0.3
2,851,272	+		GFF2809	0.76	-0.4
2,851,280	-		GFF2809	0.78	-1.4
2,851,295	-		GFF2809	0.81	-0.7
2,851,302	+		GFF2809	0.82	-1.3
2,851,302	+		GFF2809	0.82	-0.2
2,851,302	+		GFF2809	0.82	-0.4
2,851,302	+		GFF2809	0.82	-1.4
2,851,308	+		GFF2809	0.83	+0.2
2,851,318	+		GFF2809	0.85	+1.0
2,851,318	+		GFF2809	0.85	+0.6
2,851,326	-		GFF2809	0.86	-1.1
2,851,345	-				-1.2
2,851,360	-				-1.4
2,851,375	-				+0.4
2,851,379	+				+0.1
2,851,382	-				+0.1
2,851,384	+				+0.0
2,851,387	-				-0.4
2,851,387	-				-0.1
2,851,393	+				-0.6
2,851,394	+				-1.6
2,851,394	+				-1.6
2,851,395	+				+1.0
2,851,399	+				+0.2
2,851,400	+				+1.5
2,851,400	+				-1.5
2,851,402	-				-0.1
2,851,403	-				-0.6
2,851,408	-				-1.1
2,851,408	-				-0.2
2,851,426	-				-1.4
2,851,434	+				-1.8
2,851,479	+				-1.8
2,851,504	+				+0.3
2,851,504	+				-1.2
2,851,512	-				-1.6
2,851,512	-				-1.4
2,851,512	-				-0.1
2,851,512	-				-0.8
2,851,512	-				-1.2
2,851,512	-				-1.0
2,851,517	-				-1.6
2,851,517	-				-0.6
2,851,517	-				-0.6
2,851,520	+				-0.3
2,851,520	+				-0.9
2,851,520	+				-0.5
2,851,528	-				-0.4
2,851,528	-				+0.2
2,851,528	-				-1.1
2,851,528	-				+0.1
2,851,550	-				-1.4
2,851,574	-				-0.6
2,851,584	-				+0.3
2,851,584	-				-1.0
2,851,597	+				-1.8
2,851,603	-				-1.0
2,851,627	+				-0.9
2,851,633	+				+0.9
2,851,633	+				-0.4
2,851,641	-				-1.0
2,851,641	-				-0.8
2,851,646	-				-1.1
2,851,656	+				-0.0
2,851,656	+				+0.4
2,851,656	+				-0.3
2,851,661	+				-0.1
2,851,661	+				-1.1
2,851,664	-				+0.9
2,851,664	-				-1.7
2,851,666	+				-0.3
2,851,669	-				+0.2
2,851,674	-				+0.6
2,851,695	+				-0.9
2,851,756	+				-1.7
2,851,769	+				-1.8
2,851,769	+				+0.3
2,851,769	+				-0.5
2,851,792	+				-1.6
2,851,792	-				+0.5
2,851,800	-				+0.7
2,851,806	-				-0.6
2,851,824	-				-0.4
2,851,834	+				+0.1
2,851,837	-				+0.1
2,851,843	+				+0.2
2,851,854	+				+0.0
2,851,854	+				+0.6
2,851,862	-				+0.6
2,851,874	-				+1.1
2,851,895	+				+0.2
2,851,896	+				+0.3
2,851,896	+				-0.4
2,851,904	-				+0.6
2,851,904	-				-1.2
2,851,904	-				+0.8
2,851,904	-				-1.4
2,851,908	-				-0.9
2,851,917	+				-0.9
2,851,929	+				-0.6
2,851,997	+				-1.1
2,851,997	+				+0.3
2,852,004	-				+1.2
2,852,011	-				+0.7
2,852,020	-				-0.6
2,852,050	-		GFF2810	0.11	-1.9
2,852,052	+		GFF2810	0.11	+0.5
2,852,090	+		GFF2810	0.13	-0.4
2,852,100	+		GFF2810	0.14	+0.7
2,852,109	-		GFF2810	0.15	+1.3
2,852,114	+		GFF2810	0.15	-0.1
2,852,121	+		GFF2810	0.15	-0.0
2,852,122	-		GFF2810	0.15	-0.1
2,852,127	+		GFF2810	0.16	+1.0
2,852,131	+		GFF2810	0.16	-0.2
2,852,134	-		GFF2810	0.16	+0.6
2,852,139	-		GFF2810	0.16	-1.4
2,852,172	+		GFF2810	0.18	-1.0
2,852,187	+		GFF2810	0.19	-0.5
2,852,187	+		GFF2810	0.19	-1.2
2,852,187	+		GFF2810	0.19	+0.2
2,852,187	+		GFF2810	0.19	-1.5
2,852,187	+		GFF2810	0.19	-1.4
2,852,187	+		GFF2810	0.19	+0.7
2,852,195	-		GFF2810	0.20	+0.0
2,852,195	-		GFF2810	0.20	+0.2
2,852,195	-		GFF2810	0.20	-0.6
2,852,195	-		GFF2810	0.20	+0.3
2,852,195	-		GFF2810	0.20	-0.9
2,852,195	-		GFF2810	0.20	+1.0
2,852,195	-		GFF2810	0.20	-2.1
2,852,195	-		GFF2810	0.20	-2.9
2,852,205	-		GFF2810	0.20	-0.8
2,852,205	-		GFF2810	0.20	-2.7
2,852,220	+		GFF2810	0.21	+0.6
2,852,220	+		GFF2810	0.21	-0.8
2,852,220	+		GFF2810	0.21	-1.1
2,852,220	+		GFF2810	0.21	+0.2
2,852,220	+		GFF2810	0.21	-1.7
2,852,224	+		GFF2810	0.22	+1.2
2,852,225	+		GFF2810	0.22	+0.3
2,852,228	-		GFF2810	0.22	-2.6
2,852,228	-		GFF2810	0.22	+0.3
2,852,228	-		GFF2810	0.22	-0.3
2,852,233	-		GFF2810	0.22	+0.6
2,852,235	+		GFF2810	0.22	-0.3
2,852,239	+		GFF2810	0.23	+0.3
2,852,261	+		GFF2810	0.24	+0.1
2,852,274	-		GFF2810	0.25	+0.9
2,852,283	-		GFF2810	0.25	-0.3
2,852,286	+		GFF2810	0.25	-1.6
2,852,299	+		GFF2810	0.26	-2.1
2,852,314	+		GFF2810	0.27	+0.5
2,852,319	+		GFF2810	0.28	-0.8
2,852,338	+		GFF2810	0.29	-0.2
2,852,338	+		GFF2810	0.29	-0.5
2,852,338	+		GFF2810	0.29	-0.4
2,852,339	+		GFF2810	0.29	+0.5
2,852,354	-		GFF2810	0.30	+0.5
2,852,370	-		GFF2810	0.31	-1.1
2,852,370	-		GFF2810	0.31	-0.3
2,852,396	+		GFF2810	0.32	+0.9
2,852,396	+		GFF2810	0.32	+0.0