Strain Fitness in Sphingobium sp. HT1-2 around GFF2540

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
2,556,530	+		GFF2539	0.52	+1.4
2,556,530	-		GFF2539	0.52	-1.8
2,556,532	+		GFF2539	0.52	-0.3
2,556,538	-		GFF2539	0.53	+0.3
2,556,556	-		GFF2539	0.54	+1.2
2,556,556	-		GFF2539	0.54	+0.8
2,556,578	-		GFF2539	0.55	+0.5
2,556,620	+		GFF2539	0.57	-0.6
2,556,620	+		GFF2539	0.57	-0.5
2,556,630	-		GFF2539	0.58	+1.3
2,556,653	-		GFF2539	0.59	-1.1
2,556,695	-		GFF2539	0.61	+1.3
2,556,695	-		GFF2539	0.61	-1.1
2,556,695	-		GFF2539	0.61	+0.6
2,556,704	-		GFF2539	0.62	-1.0
2,556,706	+		GFF2539	0.62	+0.7
2,556,706	+		GFF2539	0.62	+0.5
2,556,714	-		GFF2539	0.62	+0.3
2,556,791	+		GFF2539	0.66	+0.5
2,556,791	+		GFF2539	0.66	-0.9
2,556,791	+		GFF2539	0.66	-2.3
2,556,791	+		GFF2539	0.66	-0.2
2,556,796	+		GFF2539	0.67	-1.8
2,556,796	+		GFF2539	0.67	-1.6
2,556,796	+		GFF2539	0.67	+1.4
2,556,804	-		GFF2539	0.67	-1.4
2,556,804	-		GFF2539	0.67	+0.2
2,556,804	-		GFF2539	0.67	-0.7
2,556,804	-		GFF2539	0.67	+0.4
2,556,804	-		GFF2539	0.67	+0.0
2,556,833	-		GFF2539	0.69	-0.3
2,556,839	+		GFF2539	0.69	-0.7
2,556,840	-		GFF2539	0.69	-1.1
2,556,840	-		GFF2539	0.69	+0.1
2,556,850	-		GFF2539	0.69	-2.3
2,556,850	-		GFF2539	0.69	+0.2
2,556,855	-		GFF2539	0.70	-0.3
2,556,860	-		GFF2539	0.70	-2.0
2,556,880	+		GFF2539	0.71	+0.0
2,556,933	-		GFF2539	0.74	+1.1
2,556,960	+		GFF2539	0.75	+0.4
2,556,968	-		GFF2539	0.76	-1.1
2,556,973	+		GFF2539	0.76	+1.1
2,556,974	-		GFF2539	0.76	-1.7
2,556,981	-		GFF2539	0.77	+0.9
2,556,989	+		GFF2539	0.77	+1.0
2,556,997	-		GFF2539	0.77	+0.4
2,556,997	-		GFF2539	0.77	+0.1
2,557,024	+		GFF2539	0.79	-0.8
2,557,024	+		GFF2539	0.79	-0.6
2,557,024	+		GFF2539	0.79	-0.6
2,557,024	+		GFF2539	0.79	-0.3
2,557,024	+		GFF2539	0.79	-0.9
2,557,024	+		GFF2539	0.79	+0.1
2,557,024	+		GFF2539	0.79	+0.2
2,557,024	+		GFF2539	0.79	+0.3
2,557,032	-		GFF2539	0.79	-0.1
2,557,032	-		GFF2539	0.79	+0.9
2,557,032	-		GFF2539	0.79	-1.7
2,557,032	-		GFF2539	0.79	-2.0
2,557,032	-		GFF2539	0.79	+0.2
2,557,032	-		GFF2539	0.79	-1.0
2,557,032	-		GFF2539	0.79	+0.1
2,557,032	-		GFF2539	0.79	+0.3
2,557,032	-		GFF2539	0.79	+0.6
2,557,032	-		GFF2539	0.79	+0.3
2,557,032	-		GFF2539	0.79	-1.5
2,557,061	+		GFF2539	0.81	+0.5
2,557,061	+		GFF2539	0.81	-0.7
2,557,091	+		GFF2539	0.83	-1.3
2,557,122	+		GFF2539	0.84	+0.5
2,557,129	-		GFF2539	0.85	+0.4
2,557,129	-		GFF2539	0.85	+0.6
2,557,198	+		GFF2539	0.88	-1.6
2,557,198	+		GFF2539	0.88	+0.7
2,557,198	+		GFF2539	0.88	-0.2
2,557,198	+		GFF2539	0.88	+1.0
2,557,203	+		GFF2539	0.89	-1.6
2,557,203	+		GFF2539	0.89	-0.6
2,557,203	+		GFF2539	0.89	-0.7
2,557,203	+		GFF2539	0.89	+1.1
2,557,203	+		GFF2539	0.89	-0.8
2,557,203	+		GFF2539	0.89	-0.1
2,557,206	-		GFF2539	0.89	+0.1
2,557,206	-		GFF2539	0.89	-0.3
2,557,211	-		GFF2539	0.89	-1.3
2,557,211	-		GFF2539	0.89	+1.1
2,557,211	-		GFF2539	0.89	-1.2
2,557,216	-		GFF2539	0.89	-0.1
2,557,255	+				-1.3
2,557,262	+				+0.0
2,557,262	+				-2.0
2,557,262	+				+0.9
2,557,264	+				-1.2
2,557,267	+				-2.1
2,557,270	-				+1.5
2,557,270	-				-1.0
2,557,270	-				+0.8
2,557,272	-				-0.1
2,557,289	+				-0.0
2,557,289	+				-0.4
2,557,292	-				+1.5
2,557,294	+				-2.5
2,557,297	-				-0.5
2,557,297	-				-0.4
2,557,297	-				-1.3
2,557,297	-				-0.3
2,557,301	-				-0.3
2,557,302	-				-0.1
2,557,309	+				+0.5
2,557,309	+				-2.0
2,557,314	+				-0.7
2,557,314	+				-0.8
2,557,317	-				-2.0
2,557,322	-				-0.8
2,557,322	-				-1.2
2,557,367	+				+0.6
2,557,367	+				+0.5
2,557,371	-				-1.4
2,557,371	-				-1.8
2,557,375	-				+1.2
2,557,409	+				-1.4
2,557,419	+				-0.1
2,557,425	-				+0.0
2,557,425	-				+0.5
2,557,427	-				+0.2
2,557,427	-				-0.9
2,557,434	+				-0.3
2,557,442	-				+1.1
2,557,449	-				+1.4
2,557,468	+				-2.2
2,557,504	+				-1.1
2,557,512	+				-2.5
2,557,512	+				-0.8
2,557,512	-				+1.2
2,557,517	+				-1.7
2,557,517	+				-0.8
2,557,520	-				+0.1
2,557,522	+				-2.0
2,557,525	-				+0.0
2,557,525	-				-0.4
2,557,525	-				-0.0
2,557,529	+				-0.3
2,557,532	+				-0.3
2,557,535	+				+0.7
2,557,540	-				+0.3
2,557,550	+				-0.6
2,557,555	-				-3.0
2,557,558	-				-0.7
2,557,569	+				+1.1
2,557,583	+				-1.4
2,557,592	-				+0.0
2,557,617	+		GFF2540	0.11	+0.5
2,557,618	+		GFF2540	0.11	-1.8
2,557,657	+		GFF2540	0.16	+0.5
2,557,666	-		GFF2540	0.17	-0.5
2,557,695	-		GFF2540	0.20	-0.1
2,557,696	+		GFF2540	0.20	-0.7
2,557,696	+		GFF2540	0.20	-0.1
2,557,711	-		GFF2540	0.22	-0.4
2,557,724	-		GFF2540	0.23	+0.7
2,557,724	-		GFF2540	0.23	+1.4
2,557,737	-		GFF2540	0.25	-1.0
2,557,754	+		GFF2540	0.27	-0.8
2,557,772	+		GFF2540	0.29	-2.7
2,557,782	+		GFF2540	0.30	-1.8
2,557,782	+		GFF2540	0.30	+0.5
2,557,782	+		GFF2540	0.30	-0.0
2,557,787	+		GFF2540	0.30	-0.6
2,557,790	-		GFF2540	0.31	+0.3
2,557,795	-		GFF2540	0.31	-1.2
2,557,795	-		GFF2540	0.31	-0.3
2,557,801	+		GFF2540	0.32	-0.1
2,557,801	+		GFF2540	0.32	-0.2
2,557,809	-		GFF2540	0.33	-0.3
2,557,809	-		GFF2540	0.33	-1.1
2,557,811	-		GFF2540	0.33	+0.4
2,557,821	+		GFF2540	0.34	+0.3
2,557,829	-		GFF2540	0.35	+0.1
2,557,829	-		GFF2540	0.35	+0.1
2,557,829	-		GFF2540	0.35	-0.7
2,557,829	-		GFF2540	0.35	+0.5
2,557,843	+		GFF2540	0.37	-0.1
2,557,851	-		GFF2540	0.38	-2.0
2,557,851	-		GFF2540	0.38	+0.5
2,557,867	+		GFF2540	0.39	-0.7
2,557,890	+		GFF2540	0.42	+0.5
2,557,903	-		GFF2540	0.44	-0.7
2,557,903	-		GFF2540	0.44	-0.3
2,557,907	+		GFF2540	0.44	-0.9
2,557,933	+		GFF2540	0.47	-1.3
2,557,941	-		GFF2540	0.48	+0.7
2,557,958	+		GFF2540	0.50	-1.4
2,557,966	-		GFF2540	0.51	-0.3
2,558,008	+		GFF2540	0.56	+0.5
2,558,016	-		GFF2540	0.56	-0.1
2,558,028	+		GFF2540	0.58	+0.8
2,558,052	+		GFF2540	0.61	-0.5
2,558,057	-		GFF2540	0.61	-0.7
2,558,083	-		GFF2540	0.64	-0.2
2,558,083	-		GFF2540	0.64	-1.5
2,558,094	+		GFF2540	0.65	-0.6
2,558,111	+		GFF2540	0.67	-0.6
2,558,111	+		GFF2540	0.67	-0.7
2,558,155	-		GFF2540	0.72	-1.0
2,558,170	-		GFF2540	0.74	+1.3
2,558,199	+		GFF2540	0.77	-0.5
2,558,201	+		GFF2540	0.77	-0.5
2,558,201	-		GFF2540	0.77	+0.1
2,558,207	-		GFF2540	0.78	+0.5
2,558,209	-		GFF2540	0.78	-1.6
2,558,244	+		GFF2540	0.82	-0.1
2,558,244	+		GFF2540	0.82	+0.5
2,558,244	+		GFF2540	0.82	-0.3
2,558,249	+		GFF2540	0.83	-1.3
2,558,252	-		GFF2540	0.83	-0.7
2,558,252	-		GFF2540	0.83	-2.4
2,558,252	-		GFF2540	0.83	-0.3
2,558,252	-		GFF2540	0.83	-1.1
2,558,252	-		GFF2540	0.83	+0.3
2,558,254	+		GFF2540	0.84	-1.0
2,558,254	+		GFF2540	0.84	-2.0
2,558,257	-		GFF2540	0.84	-0.5
2,558,257	-		GFF2540	0.84	-0.1
2,558,257	-		GFF2540	0.84	+0.3
2,558,262	-		GFF2540	0.84	-1.3
2,558,272	+		GFF2540	0.86	-2.2
2,558,273	+		GFF2540	0.86	-1.1
2,558,273	+		GFF2540	0.86	-0.4
2,558,301	-		GFF2540	0.89	-0.4
2,558,307	-		GFF2540	0.90	-0.0
2,558,314	+				+0.2
2,558,314	+				-0.8
2,558,314	+				+0.1
2,558,314	+				-1.5
2,558,314	+				-0.1
2,558,314	+				-2.4
2,558,320	+				+0.5
2,558,322	-				-2.3
2,558,322	-				-0.7
2,558,322	-				-1.5
2,558,322	-				-0.2
2,558,322	-				-0.7
2,558,375	+				-0.1
2,558,380	+				-0.6
2,558,393	+				-0.8
2,558,393	+				+0.9
2,558,393	+				-0.6
2,558,393	+				+0.3
2,558,401	-				+0.2
2,558,401	-				-0.5
2,558,401	-				-1.0
2,558,455	+				+0.1
2,558,455	+				-0.9
2,558,463	-				-0.5
2,558,485	+				+0.1
2,558,522	-				-0.6
2,558,546	-				-0.3
2,558,568	-		GFF2541	0.11	+0.5
2,558,568	-		GFF2541	0.11	-1.7
2,558,574	+		GFF2541	0.12	+0.1
2,558,582	-		GFF2541	0.13	-0.7
2,558,607	+		GFF2541	0.16	+0.2
2,558,607	+		GFF2541	0.16	+0.6
2,558,607	+		GFF2541	0.16	-1.3
2,558,607	+		GFF2541	0.16	-0.9
2,558,607	+		GFF2541	0.16	+0.8
2,558,615	-		GFF2541	0.16	-0.4
2,558,615	-		GFF2541	0.16	+0.0
2,558,620	+		GFF2541	0.17	-0.3
2,558,642	+		GFF2541	0.19	+0.7
2,558,642	+		GFF2541	0.19	-0.5
2,558,642	+		GFF2541	0.19	-2.5
2,558,642	+		GFF2541	0.19	+0.0
2,558,650	-		GFF2541	0.20	+0.3
2,558,650	-		GFF2541	0.20	+0.4
2,558,650	-		GFF2541	0.20	-0.8
2,558,650	-		GFF2541	0.20	+0.3
2,558,650	-		GFF2541	0.20	-0.8
2,558,693	-		GFF2541	0.25	+0.5
2,558,713	+		GFF2541	0.27	+0.1
2,558,721	-		GFF2541	0.28	+1.0
2,558,722	+		GFF2541	0.28	-0.0
2,558,722	+		GFF2541	0.28	-1.5
2,558,736	+		GFF2541	0.30	-1.7
2,558,744	-		GFF2541	0.31	+0.2
2,558,754	-		GFF2541	0.32	-0.7
2,558,756	+		GFF2541	0.32	-1.0
2,558,764	-		GFF2541	0.33	+0.7
2,558,770	-		GFF2541	0.34	+0.6
2,558,774	+		GFF2541	0.34	-2.2
2,558,777	-		GFF2541	0.35	-1.3
2,558,782	-		GFF2541	0.35	+1.5
2,558,782	-		GFF2541	0.35	+0.3
2,558,807	+		GFF2541	0.38	+0.4
2,558,815	-		GFF2541	0.39	-0.6
2,558,815	-		GFF2541	0.39	+0.2
2,558,885	+		GFF2541	0.47	-1.3
2,558,885	+		GFF2541	0.47	-0.1
2,558,885	+		GFF2541	0.47	+0.7
2,558,886	+		GFF2541	0.47	-0.8
2,558,904	+		GFF2541	0.49	-0.3
2,558,918	+		GFF2541	0.50	-0.1
2,558,926	-		GFF2541	0.51	-0.4
2,558,929	+		GFF2541	0.52	-2.0
2,558,936	-		GFF2541	0.52	-0.3
2,558,937	-		GFF2541	0.52	-1.7
2,558,940	+		GFF2541	0.53	-1.0
2,558,962	+		GFF2541	0.55	-0.6
2,558,962	+		GFF2541	0.55	-0.5
2,558,970	-		GFF2541	0.56	+1.1
2,558,978	+		GFF2541	0.57	-0.5
2,558,980	-		GFF2541	0.57	+0.3
2,559,036	+		GFF2541	0.64	-1.6
2,559,041	-		GFF2541	0.64	-1.5
2,559,053	+		GFF2541	0.65	-0.9
2,559,055	-		GFF2541	0.66	+0.5
2,559,069	+		GFF2541	0.67	+0.0
2,559,073	+		GFF2541	0.68	-0.6
2,559,079	-		GFF2541	0.68	+0.1
2,559,084	+		GFF2541	0.69	-0.3
2,559,084	+		GFF2541	0.69	+0.0
2,559,092	-		GFF2541	0.70	-0.2
2,559,092	-		GFF2541	0.70	+0.5
2,559,094	+		GFF2541	0.70	-0.2
2,559,107	+		GFF2541	0.71	-0.2
2,559,140	+		GFF2541	0.75	+1.5
2,559,148	-		GFF2541	0.76	+0.0
2,559,158	-		GFF2541	0.77	+0.2
2,559,168	+		GFF2541	0.78	+0.7
2,559,235	-		GFF2541	0.86	+0.1
2,559,241	+		GFF2541	0.86	+0.9
2,559,241	+		GFF2541	0.86	-1.6
2,559,249	-		GFF2541	0.87	+0.0
2,559,249	-		GFF2541	0.87	-1.2
2,559,249	-		GFF2541	0.87	-0.4
2,559,250	+		GFF2541	0.87	-0.6
2,559,263	+		GFF2541	0.89	-0.9
2,559,271	-		GFF2541	0.90	-0.8
2,559,355	+				+0.5
2,559,375	+				-1.0
2,559,383	-				-0.9
2,559,387	+				-0.4