Strain Fitness in Sphingobium sp. HT1-2 around GFF2527

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
2,544,564	+		GFF2525	0.79	+0.7
2,544,566	+		GFF2525	0.80	+0.7
2,544,570	+		GFF2525	0.80	-0.7
2,544,599	-		GFF2525	0.81	-1.3
2,544,664	+		GFF2525	0.83	-2.0
2,544,672	+		GFF2525	0.83	-1.9
2,544,672	-		GFF2525	0.83	-1.4
2,544,678	+		GFF2525	0.83	-2.3
2,544,678	+		GFF2525	0.83	+0.4
2,544,685	-		GFF2525	0.84	-1.0
2,544,685	-		GFF2525	0.84	-0.2
2,544,685	-		GFF2525	0.84	-0.8
2,544,685	-		GFF2525	0.84	+0.4
2,544,685	-		GFF2525	0.84	-0.1
2,544,690	-		GFF2525	0.84	-0.1
2,544,714	+		GFF2525	0.85	-0.1
2,544,714	+		GFF2525	0.85	-3.1
2,544,719	+		GFF2525	0.85	-0.4
2,544,719	+		GFF2525	0.85	-2.7
2,544,719	+		GFF2525	0.85	+0.3
2,544,719	+		GFF2525	0.85	+0.3
2,544,719	+		GFF2525	0.85	-0.3
2,544,722	-		GFF2525	0.85	-0.4
2,544,722	-		GFF2525	0.85	-0.1
2,544,723	-		GFF2525	0.85	+1.0
2,544,724	+		GFF2525	0.85	-0.4
2,544,727	-		GFF2525	0.85	-0.3
2,544,727	-		GFF2525	0.85	+0.6
2,544,727	-		GFF2525	0.85	-0.8
2,544,727	-		GFF2525	0.85	+0.8
2,544,727	-		GFF2525	0.85	-1.3
2,544,727	-		GFF2525	0.85	+0.2
2,544,732	-		GFF2525	0.85	-0.7
2,544,732	-		GFF2525	0.85	-0.3
2,544,780	+		GFF2525	0.87	+1.9
2,544,780	+		GFF2525	0.87	-0.2
2,544,792	+		GFF2525	0.87	-0.1
2,544,845	-		GFF2525	0.89	+1.0
2,544,887	-				-0.3
2,544,921	-				-0.3
2,544,922	+				-0.4
2,544,937	+				+0.2
2,544,944	+				+0.6
2,544,944	+				-0.9
2,544,944	+				-0.7
2,544,944	+				-1.4
2,544,944	+				-0.0
2,544,944	+				-0.9
2,544,949	+				-0.6
2,544,952	-				-1.7
2,544,952	-				+0.4
2,544,952	-				-3.1
2,544,952	-				+0.3
2,544,952	-				+0.8
2,544,952	-				+1.5
2,544,954	+				-0.6
2,544,954	+				-1.7
2,544,954	+				+0.4
2,544,957	-				+0.9
2,544,959	+				+0.1
2,544,959	+				-1.6
2,544,962	-				-1.0
2,544,964	+				+0.3
2,544,967	-				+0.2
2,544,970	-				+0.7
2,544,972	-				-1.3
2,544,972	-				-1.2
2,544,976	+				-0.3
2,544,976	+				+1.1
2,544,976	+				-0.6
2,544,977	+				-0.8
2,544,977	+				-0.9
2,544,977	-				+0.2
2,544,985	-				+0.0
2,544,985	-				-1.4
2,544,985	-				+1.0
2,544,991	+				-0.7
2,544,992	+				+0.7
2,544,992	+				-0.2
2,544,992	+				-0.5
2,544,992	+				-0.2
2,544,992	+				+0.1
2,544,992	+				-1.9
2,544,992	+				+0.4
2,544,992	+				+1.0
2,544,992	+				-0.3
2,544,992	+				-0.7
2,544,999	-				+0.4
2,544,999	-				-0.6
2,544,999	-				-0.7
2,544,999	-				-0.3
2,544,999	-				-0.1
2,544,999	-				-0.7
2,545,000	-				+0.0
2,545,000	-				-0.3
2,545,000	-				+0.6
2,545,000	-				+1.0
2,545,013	-				+0.3
2,545,022	+				-1.0
2,545,045	+				-1.4
2,545,045	+				-0.7
2,545,046	-				-1.2
2,545,053	-				-2.4
2,545,053	-				-1.0
2,545,053	-				-0.3
2,545,053	-				-0.1
2,545,059	+				+0.6
2,545,065	+				-2.0
2,545,065	+				+0.0
2,545,132	-				-0.8
2,545,133	-				-0.4
2,545,133	-				-1.0
2,545,149	+				-0.8
2,545,157	-				-0.2
2,545,157	-				-0.1
2,545,157	-				-1.2
2,545,168	-				-0.7
2,545,169	-				-0.2
2,545,201	+		GFF2526	0.15	-1.0
2,545,225	+		GFF2526	0.22	+1.2
2,545,241	+		GFF2526	0.27	-0.1
2,545,241	+		GFF2526	0.27	+0.0
2,545,248	-		GFF2526	0.29	+0.2
2,545,249	+		GFF2526	0.29	-0.4
2,545,249	-		GFF2526	0.29	-0.8
2,545,249	-		GFF2526	0.29	-0.1
2,545,249	-		GFF2526	0.29	-0.4
2,545,254	-		GFF2526	0.31	+0.9
2,545,270	+		GFF2526	0.36	-1.3
2,545,274	+		GFF2526	0.37	-0.2
2,545,278	-		GFF2526	0.38	+0.6
2,545,316	+		GFF2526	0.50	+1.0
2,545,327	+		GFF2526	0.53	+1.0
2,545,342	+		GFF2526	0.58	+0.8
2,545,393	+		GFF2526	0.73	-0.4
2,545,401	-		GFF2526	0.75	+1.3
2,545,408	-		GFF2526	0.78	+0.3
2,545,421	-		GFF2526	0.82	+1.1
2,545,426	-		GFF2526	0.83	-1.4
2,545,426	-		GFF2526	0.83	-1.4
2,545,432	-		GFF2526	0.85	-0.1
2,545,441	-		GFF2526	0.88	-1.0
2,545,441	-		GFF2526	0.88	-0.6
2,545,444	+		GFF2526	0.88	-0.4
2,545,451	-				-1.3
2,545,451	-				-0.0
2,545,462	-				+0.9
2,545,488	-				-1.6
2,545,527	-				-0.5
2,545,529	+				-0.4
2,545,556	+				-1.3
2,545,556	+				-1.8
2,545,556	+				+0.6
2,545,556	-				+1.1
2,545,564	-				-0.8
2,545,564	-				-1.6
2,545,657	-		GFF2527	0.18	-0.7
2,545,673	-		GFF2527	0.21	-0.3
2,545,675	+		GFF2527	0.22	-0.8
2,545,681	-		GFF2527	0.23	-0.8
2,545,683	-		GFF2527	0.23	-1.9
2,545,683	-		GFF2527	0.23	+1.1
2,545,695	-		GFF2527	0.26	-1.6
2,545,721	+		GFF2527	0.30	+0.1
2,545,729	-		GFF2527	0.32	-0.9
2,545,736	-		GFF2527	0.33	+0.6
2,545,760	+		GFF2527	0.38	-1.6
2,545,793	+		GFF2527	0.44	-0.2
2,545,812	+		GFF2527	0.47	+1.0
2,545,812	+		GFF2527	0.47	+0.4
2,545,814	-		GFF2527	0.48	+0.4
2,545,822	+		GFF2527	0.49	-2.0
2,545,822	+		GFF2527	0.49	+1.2
2,545,825	-		GFF2527	0.50	-0.3
2,545,848	-		GFF2527	0.54	-0.4
2,545,853	+		GFF2527	0.55	-0.5
2,545,893	+		GFF2527	0.62	+0.1
2,545,896	-		GFF2527	0.63	-1.0
2,545,901	-		GFF2527	0.64	-1.8
2,545,901	-		GFF2527	0.64	-0.2
2,545,901	-		GFF2527	0.64	-1.0
2,545,901	-		GFF2527	0.64	+0.9
2,545,923	-		GFF2527	0.68	+0.3
2,546,013	-		GFF2527	0.85	+1.4
2,546,024	+		GFF2527	0.87	+0.7
2,546,029	+		GFF2527	0.88	-1.4
2,546,041	+				+0.4
2,546,043	+				-1.4
2,546,049	-				-0.3
2,546,051	-				-0.3
2,546,083	+				-0.6
2,546,096	+				-0.7
2,546,097	+				+0.0
2,546,097	-				-0.0
2,546,101	+				+0.8
2,546,104	-				-0.1
2,546,104	-				-1.4
2,546,104	-				-0.6
2,546,104	-				+0.9
2,546,106	+				-0.8
2,546,106	+				+0.1
2,546,107	+				-0.5
2,546,107	+				-1.4
2,546,107	+				+1.1
2,546,107	+				-1.7
2,546,107	+				-0.7
2,546,107	+				+0.0
2,546,107	+				-1.3
2,546,107	+				-0.2
2,546,114	+				+0.4
2,546,114	-				+0.9
2,546,115	-				-0.7
2,546,115	-				+0.6
2,546,115	-				-1.1
2,546,115	-				-0.2
2,546,115	-				-1.7
2,546,115	-				+1.1
2,546,115	-				-1.6
2,546,115	-				+1.0
2,546,117	+				-0.3
2,546,122	-				-1.3
2,546,122	-				-0.2
2,546,132	-				+0.5
2,546,180	+				+0.1
2,546,180	+				+0.4
2,546,180	+				-0.5
2,546,180	+				-0.6
2,546,185	+				-1.6
2,546,185	+				-0.4
2,546,188	-				+0.6
2,546,188	-				+0.2
2,546,188	-				+1.1
2,546,188	-				-0.2
2,546,188	-				-0.1
2,546,188	-				+0.1
2,546,190	+				-1.0
2,546,190	+				-1.0
2,546,190	+				-1.3
2,546,190	+				+0.5
2,546,190	+				-1.2
2,546,192	+				+0.9
2,546,193	-				+0.4
2,546,193	-				-0.1
2,546,193	-				-0.3
2,546,193	-				-2.1
2,546,193	-				-1.1
2,546,197	+				+0.3
2,546,197	+				-1.5
2,546,197	+				-1.0
2,546,197	+				-0.1
2,546,198	+				-0.4
2,546,198	+				-0.1
2,546,198	+				+0.1
2,546,198	+				+0.3
2,546,198	+				-0.9
2,546,198	-				-0.2
2,546,198	-				-1.1
2,546,198	-				-1.4
2,546,198	-				-0.4
2,546,198	-				+0.1
2,546,198	-				+0.0
2,546,198	-				-0.7
2,546,200	-				-1.5
2,546,200	-				-0.8
2,546,206	-				-0.2
2,546,206	-				-0.1
2,546,206	-				-0.6
2,546,206	-				-1.0
2,546,211	+				+0.9
2,546,259	+				-0.9
2,546,268	-				-0.3
2,546,275	+				+0.3
2,546,278	-				-2.0
2,546,297	+				-0.4
2,546,316	+		GFF2528	0.18	-0.2
2,546,316	+		GFF2528	0.18	-0.9
2,546,323	-		GFF2528	0.22	+1.0
2,546,350	+		GFF2528	0.37	-0.4
2,546,357	+		GFF2528	0.41	-0.7
2,546,357	+		GFF2528	0.41	+2.1
2,546,358	-		GFF2528	0.42	-1.0
2,546,365	-		GFF2528	0.46	+0.1
2,546,396	-		GFF2528	0.63	-0.3
2,546,401	+		GFF2528	0.66	-1.7
2,546,433	+		GFF2528	0.83	-1.3
2,546,441	-		GFF2528	0.88	+1.2
2,546,447	-				-0.4
2,546,447	-				-0.1
2,546,447	-				+0.0
2,546,490	+				+0.0
2,546,521	+				+0.5
2,546,556	+				-2.6
2,546,580	+				+0.2
2,546,589	-				-0.1
2,546,589	-				-0.6
2,546,612	-				+0.1
2,546,620	+				+0.5
2,546,622	-				-0.7
2,546,622	-				-2.1
2,546,627	+				+0.6
2,546,635	-				-0.9
2,546,635	-				+0.5
2,546,662	+				+0.2
2,546,670	-				-1.3
2,546,670	-				-0.8
2,546,689	-				-0.3
2,546,727	+				-2.7
2,546,727	+				-0.2
2,546,727	+				-0.3
2,546,727	+				-0.4
2,546,727	+				+0.8
2,546,727	+				-1.0
2,546,727	+				+1.0
2,546,727	+				+0.9
2,546,735	-				-0.6
2,546,735	-				-0.2
2,546,735	-				+0.0
2,546,735	-				+1.0
2,546,735	-				-1.7
2,546,735	-				+0.8
2,546,735	-				+0.1
2,546,740	-				-0.6
2,546,745	-				+0.1
2,546,772	+				-0.2
2,546,780	-				+0.4
2,546,782	+				+0.2
2,546,826	-				-2.0
2,546,838	+				-0.5
2,546,839	-				+0.7
2,546,850	+				-1.4
2,546,890	+				-0.4
2,546,890	+				+1.0
2,546,894	-				-0.3
2,546,904	+				-0.2
2,546,912	-				-0.7
2,546,973	-				-0.7
2,546,980	-				-2.4
2,546,981	-				-0.7
2,546,985	+				-0.5
2,547,019	-				-0.1
2,547,021	+				+0.7
2,547,031	-				+0.4
2,547,045	+		GFF2529	0.10	-0.7
2,547,045	+		GFF2529	0.10	-0.9
2,547,069	-		GFF2529	0.12	-1.3
2,547,069	-		GFF2529	0.12	-1.9
2,547,092	-		GFF2529	0.14	+0.7
2,547,092	-		GFF2529	0.14	-0.3