Strain Fitness in Sphingobium sp. HT1-2 around GFF2499

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
2,521,830	+				+0.9
2,521,844	+				-0.3
2,521,845	+				-1.2
2,521,853	+				-0.4
2,521,853	+				-1.6
2,521,853	+				+0.6
2,521,853	+				-0.4
2,521,854	+				-2.6
2,521,861	-				-0.2
2,521,861	-				+0.0
2,521,875	+				+0.5
2,521,877	+				+0.8
2,521,881	+				+0.9
2,521,882	+				+0.2
2,521,889	-				+0.9
2,521,890	-				+0.0
2,521,904	-				+0.0
2,521,912	+				-1.8
2,521,922	+				-0.1
2,521,927	+				-1.9
2,521,930	-				-0.7
2,521,930	-				+1.6
2,521,940	+				-1.3
2,521,947	-				+0.6
2,521,948	-				+0.7
2,521,948	-				-1.6
2,521,955	+				+0.7
2,521,955	+				-0.8
2,521,955	+				+0.1
2,521,955	+				-2.3
2,521,963	-				+0.6
2,521,980	+				-0.4
2,521,980	+				-0.7
2,521,981	-				-0.4
2,521,988	-				-0.4
2,522,001	+				-0.3
2,522,007	-				+0.3
2,522,009	-				-0.3
2,522,009	-				-1.8
2,522,034	-				-1.7
2,522,048	-				+0.4
2,522,050	+				+0.7
2,522,058	-				-0.9
2,522,058	-				-1.2
2,522,060	+				+1.4
2,522,060	+				+2.0
2,522,068	-				-0.8
2,522,083	+		GFF2499	0.11	-0.9
2,522,105	+		GFF2499	0.12	+0.0
2,522,105	+		GFF2499	0.12	-1.4
2,522,105	+		GFF2499	0.12	-0.7
2,522,105	+		GFF2499	0.12	-0.4
2,522,113	-		GFF2499	0.13	+1.6
2,522,113	-		GFF2499	0.13	+0.4
2,522,128	-		GFF2499	0.14	-0.7
2,522,134	-		GFF2499	0.14	-0.4
2,522,141	+		GFF2499	0.14	-3.1
2,522,142	+		GFF2499	0.14	-0.9
2,522,146	+		GFF2499	0.15	-1.3
2,522,146	+		GFF2499	0.15	+0.7
2,522,149	-		GFF2499	0.15	+0.1
2,522,159	+		GFF2499	0.15	+0.1
2,522,159	+		GFF2499	0.15	-0.7
2,522,159	+		GFF2499	0.15	+0.6
2,522,159	+		GFF2499	0.15	-0.7
2,522,159	+		GFF2499	0.15	-0.7
2,522,159	+		GFF2499	0.15	-0.8
2,522,164	+		GFF2499	0.16	-0.5
2,522,167	-		GFF2499	0.16	+0.8
2,522,167	-		GFF2499	0.16	+0.1
2,522,167	-		GFF2499	0.16	-0.6
2,522,167	-		GFF2499	0.16	-1.0
2,522,172	-		GFF2499	0.16	-0.3
2,522,177	-		GFF2499	0.16	-0.8
2,522,181	+		GFF2499	0.17	+0.1
2,522,181	+		GFF2499	0.17	-2.1
2,522,181	+		GFF2499	0.17	-1.8
2,522,181	+		GFF2499	0.17	+0.4
2,522,189	-		GFF2499	0.17	-0.4
2,522,238	-		GFF2499	0.20	-0.1
2,522,244	-		GFF2499	0.20	-0.0
2,522,267	+		GFF2499	0.22	-2.2
2,522,285	+		GFF2499	0.23	-0.1
2,522,285	+		GFF2499	0.23	+0.4
2,522,285	+		GFF2499	0.23	-0.3
2,522,317	+		GFF2499	0.25	+0.2
2,522,325	-		GFF2499	0.25	-0.3
2,522,328	+		GFF2499	0.25	+0.5
2,522,330	+		GFF2499	0.26	+1.1
2,522,330	+		GFF2499	0.26	+1.3
2,522,330	+		GFF2499	0.26	+1.3
2,522,330	+		GFF2499	0.26	+0.4
2,522,338	+		GFF2499	0.26	+1.7
2,522,338	+		GFF2499	0.26	-1.8
2,522,338	-		GFF2499	0.26	-0.6
2,522,338	-		GFF2499	0.26	+0.1
2,522,346	-		GFF2499	0.26	-0.8
2,522,346	-		GFF2499	0.26	-1.4
2,522,346	-		GFF2499	0.26	+0.4
2,522,346	-		GFF2499	0.26	+0.5
2,522,373	-		GFF2499	0.28	-0.9
2,522,455	+		GFF2499	0.33	-2.6
2,522,463	-		GFF2499	0.33	-1.3
2,522,463	-		GFF2499	0.33	-0.4
2,522,474	+		GFF2499	0.34	+0.4
2,522,474	+		GFF2499	0.34	+0.2
2,522,479	+		GFF2499	0.34	+0.6
2,522,479	+		GFF2499	0.34	-0.9
2,522,479	+		GFF2499	0.34	-0.3
2,522,479	+		GFF2499	0.34	-0.4
2,522,482	-		GFF2499	0.35	+0.8
2,522,487	-		GFF2499	0.35	-1.3
2,522,492	-		GFF2499	0.35	+0.3
2,522,499	-		GFF2499	0.36	+0.9
2,522,513	-		GFF2499	0.36	+1.7
2,522,513	-		GFF2499	0.36	-1.6
2,522,513	-		GFF2499	0.36	+0.4
2,522,513	-		GFF2499	0.36	-0.2
2,522,513	-		GFF2499	0.36	-0.7
2,522,520	+		GFF2499	0.37	+0.6
2,522,527	+		GFF2499	0.37	-1.4
2,522,527	+		GFF2499	0.37	-0.9
2,522,535	-		GFF2499	0.38	-0.6
2,522,535	-		GFF2499	0.38	+0.1
2,522,538	+		GFF2499	0.38	+1.2
2,522,538	+		GFF2499	0.38	+1.1
2,522,540	-		GFF2499	0.38	-0.1
2,522,543	+		GFF2499	0.38	+0.4
2,522,550	+		GFF2499	0.39	-1.3
2,522,550	+		GFF2499	0.39	+0.8
2,522,551	-		GFF2499	0.39	+0.1
2,522,555	+		GFF2499	0.39	-0.6
2,522,555	+		GFF2499	0.39	-0.2
2,522,560	+		GFF2499	0.39	-0.4
2,522,560	+		GFF2499	0.39	+0.7
2,522,560	+		GFF2499	0.39	-0.8
2,522,560	+		GFF2499	0.39	-1.3
2,522,560	+		GFF2499	0.39	+0.5
2,522,568	-		GFF2499	0.40	-1.3
2,522,568	-		GFF2499	0.40	+0.6
2,522,568	-		GFF2499	0.40	-0.4
2,522,571	+		GFF2499	0.40	-2.2
2,522,571	+		GFF2499	0.40	-1.3
2,522,584	+		GFF2499	0.41	+1.0
2,522,593	-		GFF2499	0.41	-0.4
2,522,593	-		GFF2499	0.41	-0.6
2,522,631	-		GFF2499	0.43	+0.1
2,522,667	+		GFF2499	0.46	+0.6
2,522,668	+		GFF2499	0.46	-0.0
2,522,668	+		GFF2499	0.46	-0.3
2,522,668	+		GFF2499	0.46	-0.7
2,522,668	+		GFF2499	0.46	-1.4
2,522,668	+		GFF2499	0.46	+0.3
2,522,668	+		GFF2499	0.46	+0.1
2,522,676	-		GFF2499	0.46	-1.0
2,522,676	-		GFF2499	0.46	-3.3
2,522,676	-		GFF2499	0.46	+0.0
2,522,676	-		GFF2499	0.46	-0.1
2,522,676	-		GFF2499	0.46	+0.2
2,522,676	-		GFF2499	0.46	+0.7
2,522,691	-		GFF2499	0.47	-1.7
2,522,698	-		GFF2499	0.47	+1.0
2,522,702	+		GFF2499	0.48	+0.3
2,522,703	+		GFF2499	0.48	+0.8
2,522,706	-		GFF2499	0.48	-2.4
2,522,708	+		GFF2499	0.48	-0.9
2,522,716	-		GFF2499	0.49	+0.1
2,522,716	-		GFF2499	0.49	-0.2
2,522,731	+		GFF2499	0.49	-0.2
2,522,732	+		GFF2499	0.49	-0.3
2,522,739	+		GFF2499	0.50	-1.1
2,522,754	+		GFF2499	0.51	-0.9
2,522,758	+		GFF2499	0.51	-2.0
2,522,758	+		GFF2499	0.51	-0.9
2,522,762	-		GFF2499	0.51	-0.3
2,522,784	+		GFF2499	0.53	+0.1
2,522,786	-		GFF2499	0.53	-1.6
2,522,796	-		GFF2499	0.53	-1.0
2,522,807	+		GFF2499	0.54	+0.4
2,522,815	-		GFF2499	0.54	+0.6
2,522,815	-		GFF2499	0.54	-0.6
2,522,857	+		GFF2499	0.57	-0.1
2,522,862	+		GFF2499	0.57	-1.1
2,522,862	+		GFF2499	0.57	+0.7
2,522,880	+		GFF2499	0.58	-0.7
2,522,899	+		GFF2499	0.59	+1.1
2,522,907	-		GFF2499	0.60	-1.1
2,522,913	+		GFF2499	0.60	+0.8
2,522,913	+		GFF2499	0.60	+0.7
2,522,936	-		GFF2499	0.62	+0.3
2,522,936	-		GFF2499	0.62	+1.3
2,522,936	-		GFF2499	0.62	+1.0
2,522,936	-		GFF2499	0.62	+1.1
2,522,943	+		GFF2499	0.62	+0.2
2,522,943	+		GFF2499	0.62	-0.2
2,522,943	+		GFF2499	0.62	+1.0
2,522,943	+		GFF2499	0.62	-1.1
2,522,943	+		GFF2499	0.62	+0.3
2,522,943	+		GFF2499	0.62	+0.6
2,522,943	+		GFF2499	0.62	-1.4
2,522,943	+		GFF2499	0.62	-0.5
2,522,943	+		GFF2499	0.62	-0.7
2,522,943	+		GFF2499	0.62	+1.2
2,522,943	+		GFF2499	0.62	+0.9
2,522,943	+		GFF2499	0.62	-0.9
2,522,950	-		GFF2499	0.62	-1.3
2,522,951	-		GFF2499	0.62	-1.1
2,522,951	-		GFF2499	0.62	+0.4
2,522,951	-		GFF2499	0.62	+0.1
2,522,961	-		GFF2499	0.63	+0.9
2,522,982	+		GFF2499	0.64	+0.4
2,523,000	+		GFF2499	0.65	+0.2
2,523,008	-		GFF2499	0.66	+0.8
2,523,013	-		GFF2499	0.66	-1.2
2,523,020	-		GFF2499	0.67	-1.2
2,523,020	-		GFF2499	0.67	+1.2
2,523,020	-		GFF2499	0.67	+0.3
2,523,030	-		GFF2499	0.67	+0.1
2,523,088	+		GFF2499	0.71	+1.1
2,523,113	+		GFF2499	0.72	-0.5
2,523,113	+		GFF2499	0.72	+0.2
2,523,120	+		GFF2499	0.73	+1.0
2,523,120	+		GFF2499	0.73	+0.2
2,523,120	+		GFF2499	0.73	-0.2
2,523,120	+		GFF2499	0.73	-0.3
2,523,120	+		GFF2499	0.73	-2.1
2,523,120	-		GFF2499	0.73	+0.3
2,523,121	-		GFF2499	0.73	+0.1
2,523,121	-		GFF2499	0.73	-1.9
2,523,121	-		GFF2499	0.73	+0.3
2,523,121	-		GFF2499	0.73	-0.4
2,523,128	-		GFF2499	0.73	-0.2
2,523,128	-		GFF2499	0.73	-0.4
2,523,128	-		GFF2499	0.73	+0.4
2,523,136	-		GFF2499	0.74	-0.4
2,523,139	+		GFF2499	0.74	+1.4
2,523,139	+		GFF2499	0.74	-1.2
2,523,139	+		GFF2499	0.74	-1.2
2,523,139	+		GFF2499	0.74	+1.2
2,523,144	+		GFF2499	0.74	-0.7
2,523,148	-		GFF2499	0.74	-1.1
2,523,148	-		GFF2499	0.74	+1.1
2,523,154	+		GFF2499	0.75	-0.3
2,523,179	-		GFF2499	0.76	-1.6
2,523,181	+		GFF2499	0.76	-0.9
2,523,181	+		GFF2499	0.76	-0.5
2,523,181	+		GFF2499	0.76	-0.1
2,523,181	+		GFF2499	0.76	+1.3
2,523,182	+		GFF2499	0.76	-1.0
2,523,189	-		GFF2499	0.77	+0.1
2,523,189	-		GFF2499	0.77	-1.1
2,523,189	-		GFF2499	0.77	-0.6
2,523,189	-		GFF2499	0.77	-0.7
2,523,190	-		GFF2499	0.77	-0.3
2,523,191	+		GFF2499	0.77	+0.9
2,523,191	+		GFF2499	0.77	-0.9
2,523,191	+		GFF2499	0.77	-0.3
2,523,199	-		GFF2499	0.77	-0.3
2,523,199	-		GFF2499	0.77	+0.8
2,523,199	-		GFF2499	0.77	-0.8
2,523,199	-		GFF2499	0.77	-1.5
2,523,213	+		GFF2499	0.78	-0.7
2,523,227	+		GFF2499	0.79	+0.7
2,523,227	+		GFF2499	0.79	-0.6
2,523,239	+		GFF2499	0.80	-1.3
2,523,239	+		GFF2499	0.80	-1.6
2,523,246	+		GFF2499	0.80	+0.3
2,523,246	+		GFF2499	0.80	-1.5
2,523,247	-		GFF2499	0.80	-0.1
2,523,254	-		GFF2499	0.81	-0.4
2,523,254	-		GFF2499	0.81	-0.1
2,523,254	-		GFF2499	0.81	+0.3
2,523,277	+		GFF2499	0.82	+0.4
2,523,277	+		GFF2499	0.82	-1.7
2,523,300	+		GFF2499	0.83	-0.6
2,523,336	+		GFF2499	0.85	-0.7
2,523,342	+		GFF2499	0.86	-2.5
2,523,354	-		GFF2499	0.86	+1.2
2,523,362	+		GFF2499	0.87	-0.0
2,523,362	+		GFF2499	0.87	-0.8
2,523,369	+		GFF2499	0.87	-0.1
2,523,375	-		GFF2499	0.88	+0.6
2,523,377	-		GFF2499	0.88	-1.2
2,523,382	+		GFF2499	0.88	-0.0
2,523,382	-		GFF2499	0.88	-0.5
2,523,384	+		GFF2499	0.88	+1.0
2,523,384	+		GFF2499	0.88	-0.2
2,523,392	-		GFF2499	0.89	-0.1
2,523,392	-		GFF2499	0.89	-1.8
2,523,418	+				-0.6
2,523,418	+				-0.2
2,523,423	+				-2.8
2,523,425	+				-0.7
2,523,433	-				-0.2
2,523,443	-				-0.6
2,523,445	+				-0.0
2,523,459	+				+0.5
2,523,473	+				+1.6
2,523,473	+				-0.8
2,523,475	+				-0.2
2,523,482	-				+0.0
2,523,501	-				+0.8
2,523,501	-				+1.8
2,523,502	+				-0.2
2,523,506	-				+0.7
2,523,510	+				-1.3
2,523,522	-				-1.5
2,523,534	+				-0.5
2,523,534	+				-0.1
2,523,534	+				-0.5
2,523,534	+				+0.0
2,523,534	+				+0.3
2,523,542	-				-1.0
2,523,542	-				+0.1
2,523,542	-				-0.3
2,523,542	-				-0.2
2,523,542	-				-0.7
2,523,542	-				-0.2
2,523,559	-				-1.1
2,523,562	+				-2.2
2,523,565	-				-0.1
2,523,565	-				-0.8
2,523,565	-				-0.3
2,523,565	-				+0.0
2,523,565	-				-1.3
2,523,565	-				-0.7
2,523,570	-				+0.6
2,523,570	-				-2.3
2,523,575	+				-0.6
2,523,575	+				+0.9
2,523,575	+				+0.6
2,523,581	+				+1.3
2,523,589	-				+1.3
2,523,622	-				+0.9
2,523,622	-				-1.2
2,523,635	-				+0.1
2,523,644	+				-0.8
2,523,646	+				-1.4
2,523,652	-				-1.5
2,523,657	+				-1.0
2,523,662	-				-0.7
2,523,667	+				+0.8
2,523,667	+				-2.4
2,523,667	+				-0.7
2,523,667	+				-0.1
2,523,675	-				-0.1
2,523,680	+				+1.1
2,523,684	+				-0.5
2,523,684	+				+0.0
2,523,691	+				+0.1
2,523,694	+				-2.1
2,523,710	+				+0.0
2,523,710	+				-0.7
2,523,710	+				+0.5
2,523,710	+				+0.3
2,523,712	-				+1.3
2,523,718	-		GFF2500	0.10	+0.6
2,523,746	+		GFF2500	0.13	+2.1
2,523,754	-		GFF2500	0.14	+0.0
2,523,802	+		GFF2500	0.19	+0.0
2,523,810	-		GFF2500	0.19	-0.2
2,523,810	-		GFF2500	0.19	-1.3
2,523,883	+		GFF2500	0.27	-1.4
2,523,889	-		GFF2500	0.27	-2.0
2,523,891	-		GFF2500	0.27	-1.5
2,523,894	+		GFF2500	0.28	+1.1
2,523,902	-		GFF2500	0.29	-0.1
2,523,904	-		GFF2500	0.29	+1.2
2,523,923	+		GFF2500	0.31	+0.7
2,523,923	+		GFF2500	0.31	-1.0
2,523,923	-		GFF2500	0.31	-1.2
2,523,926	+		GFF2500	0.31	-0.4
2,523,934	-		GFF2500	0.32	-0.4
2,523,935	-		GFF2500	0.32	-1.1
2,523,977	-		GFF2500	0.36	-0.7
2,523,987	+		GFF2500	0.37	-0.1
2,524,008	-		GFF2500	0.39	-1.0
2,524,074	+		GFF2500	0.46	+0.7
2,524,087	+		GFF2500	0.47	-0.7
2,524,100	-		GFF2500	0.48	+0.8
2,524,101	+		GFF2500	0.48	-0.2
2,524,134	+		GFF2500	0.52	-1.8
2,524,144	-		GFF2500	0.53	-0.9
2,524,148	-		GFF2500	0.53	+1.4
2,524,150	+		GFF2500	0.53	+0.4
2,524,150	+		GFF2500	0.53	+0.0
2,524,150	+		GFF2500	0.53	+0.3
2,524,150	+		GFF2500	0.53	+0.1
2,524,150	+		GFF2500	0.53	+0.8
2,524,156	-		GFF2500	0.54	-1.4
2,524,158	-		GFF2500	0.54	-0.5
2,524,158	-		GFF2500	0.54	-0.4
2,524,161	+		GFF2500	0.54	+0.4
2,524,161	+		GFF2500	0.54	+0.3
2,524,161	+		GFF2500	0.54	-0.7
2,524,161	+		GFF2500	0.54	+0.3
2,524,169	-		GFF2500	0.55	-2.8
2,524,169	-		GFF2500	0.55	-0.4
2,524,195	-		GFF2500	0.58	+0.9
2,524,211	+		GFF2500	0.59	-0.9
2,524,213	+		GFF2500	0.60	-0.5
2,524,219	-		GFF2500	0.60	-2.7
2,524,221	-		GFF2500	0.60	-0.7
2,524,221	-		GFF2500	0.60	-1.2
2,524,233	-		GFF2500	0.62	+0.4
2,524,240	+		GFF2500	0.62	-0.5
2,524,256	+		GFF2500	0.64	-1.1
2,524,256	+		GFF2500	0.64	-0.9
2,524,295	+		GFF2500	0.68	+0.0
2,524,303	-		GFF2500	0.69	-0.1
2,524,304	-		GFF2500	0.69	-0.3
2,524,310	+		GFF2500	0.69	-0.8
2,524,318	-		GFF2500	0.70	-0.7
2,524,318	-		GFF2500	0.70	-0.5
2,524,318	-		GFF2500	0.70	-1.5
2,524,320	+		GFF2500	0.70	-1.3
2,524,320	+		GFF2500	0.70	-1.4
2,524,320	+		GFF2500	0.70	-0.7
2,524,325	+		GFF2500	0.71	-0.1
2,524,330	+		GFF2500	0.71	+0.8
2,524,330	+		GFF2500	0.71	-1.1
2,524,333	-		GFF2500	0.72	-0.6
2,524,333	-		GFF2500	0.72	+1.1
2,524,335	+		GFF2500	0.72	-1.5
2,524,338	-		GFF2500	0.72	+0.4
2,524,338	-		GFF2500	0.72	-0.3
2,524,348	+		GFF2500	0.73	+0.5
2,524,357	+		GFF2500	0.74	-0.5
2,524,357	+		GFF2500	0.74	-0.9
2,524,358	+		GFF2500	0.74	+0.6
2,524,360	+		GFF2500	0.74	+0.5
2,524,376	+		GFF2500	0.76	+0.7
2,524,384	-		GFF2500	0.77	+0.6
2,524,406	-		GFF2500	0.79	-0.2
2,524,408	+		GFF2500	0.79	+1.0
2,524,408	+		GFF2500	0.79	+0.3
2,524,413	+		GFF2500	0.80	+0.8
2,524,421	-		GFF2500	0.80	-0.4
2,524,436	+		GFF2500	0.82	-1.6
2,524,441	+		GFF2500	0.82	+0.9
2,524,444	-		GFF2500	0.83	-1.9
2,524,444	-		GFF2500	0.83	-2.5
2,524,444	-		GFF2500	0.83	-2.0
2,524,444	-		GFF2500	0.83	-0.9
2,524,459	-		GFF2500	0.84	-1.4
2,524,459	-		GFF2500	0.84	-0.0
2,524,493	+		GFF2500	0.88	-0.1
2,524,518	-				-1.4
2,524,518	-				-0.2
2,524,526	-				+0.1
2,524,552	+				-1.4
2,524,552	+				-0.3
2,524,552	-				+0.7
2,524,561	-				-0.4
2,524,567	+				+0.4
2,524,570	-				+0.0
2,524,572	+				-1.6
2,524,572	+				-0.4
2,524,572	+				-0.9
2,524,572	+				+0.8
2,524,575	-				-1.9
2,524,575	-				-1.1
2,524,580	-				+0.8