Strain Fitness in Sphingobium sp. HT1-2 around GFF242

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF240 and GFF241 are separated by 65 nucleotidesGFF241 and GFF242 are separated by 142 nucleotidesGFF242 and GFF243 overlap by 8 nucleotidesGFF243 and GFF244 overlap by 4 nucleotides GFF240 - ABC transporter, substrate-binding protein (cluster 5, nickel/peptides/opines), at 244,408 to 245,916 GFF240 GFF241 - hypothetical protein, at 245,982 to 246,404 GFF241 GFF242 - Ribonuclease T2 family protein, at 246,547 to 247,254 GFF242 GFF243 - Quinolinate phosphoribosyltransferase [decarboxylating] (EC 2.4.2.19), at 247,247 to 248,101 GFF243 GFF244 - Prolyl endopeptidase (EC 3.4.21.26), at 248,098 to 250,224 GFF244 Position (kb) 246 247 248Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 245.608 kb on - strand, within GFF240at 245.632 kb on + strand, within GFF240at 245.632 kb on + strand, within GFF240at 245.640 kb on - strand, within GFF240at 245.640 kb on - strand, within GFF240at 245.657 kb on - strand, within GFF240at 245.691 kb on - strand, within GFF240at 245.691 kb on - strand, within GFF240at 245.701 kb on + strand, within GFF240at 245.720 kb on + strand, within GFF240at 245.730 kb on + strand, within GFF240at 245.730 kb on + strand, within GFF240at 245.796 kb on - strandat 245.828 kb on - strandat 245.885 kb on + strandat 245.911 kb on + strandat 245.911 kb on + strandat 245.931 kb on - strandat 245.962 kb on + strandat 245.964 kb on + strandat 245.964 kb on + strandat 245.964 kb on + strandat 245.964 kb on + strandat 245.964 kb on + strandat 245.964 kb on + strandat 245.964 kb on + strandat 245.965 kb on - strandat 245.972 kb on - strandat 245.972 kb on - strandat 245.972 kb on - strandat 245.987 kb on + strandat 246.023 kb on - strandat 246.072 kb on - strand, within GFF241at 246.092 kb on - strand, within GFF241at 246.137 kb on - strand, within GFF241at 246.137 kb on - strand, within GFF241at 246.193 kb on + strand, within GFF241at 246.253 kb on + strand, within GFF241at 246.278 kb on + strand, within GFF241at 246.286 kb on - strand, within GFF241at 246.360 kb on - strand, within GFF241at 246.368 kb on - strandat 246.457 kb on + strandat 246.457 kb on + strandat 246.457 kb on + strandat 246.465 kb on - strandat 246.467 kb on + strandat 246.467 kb on + strandat 246.475 kb on - strandat 246.477 kb on + strandat 246.485 kb on - strandat 246.499 kb on - strandat 246.511 kb on - strandat 246.543 kb on + strandat 246.543 kb on - strandat 246.552 kb on - strandat 246.563 kb on + strandat 246.563 kb on + strandat 246.581 kb on - strandat 246.595 kb on + strandat 246.635 kb on + strand, within GFF242at 246.635 kb on + strand, within GFF242at 246.640 kb on + strand, within GFF242at 246.640 kb on + strand, within GFF242at 246.640 kb on + strand, within GFF242at 246.641 kb on - strand, within GFF242at 246.648 kb on - strand, within GFF242at 246.648 kb on - strand, within GFF242at 246.648 kb on - strand, within GFF242at 246.665 kb on - strand, within GFF242at 246.704 kb on + strand, within GFF242at 246.706 kb on - strand, within GFF242at 246.709 kb on + strand, within GFF242at 246.709 kb on + strand, within GFF242at 246.712 kb on - strand, within GFF242at 246.712 kb on - strand, within GFF242at 246.727 kb on - strand, within GFF242at 246.777 kb on + strand, within GFF242at 246.785 kb on - strand, within GFF242at 246.790 kb on - strand, within GFF242at 246.792 kb on + strand, within GFF242at 246.792 kb on + strand, within GFF242at 246.795 kb on - strand, within GFF242at 246.843 kb on + strand, within GFF242at 246.858 kb on + strand, within GFF242at 246.874 kb on - strand, within GFF242at 246.885 kb on + strand, within GFF242at 246.893 kb on - strand, within GFF242at 246.899 kb on + strand, within GFF242at 246.923 kb on - strand, within GFF242at 246.962 kb on - strand, within GFF242at 247.030 kb on + strand, within GFF242at 247.077 kb on + strand, within GFF242at 247.131 kb on + strand, within GFF242at 247.169 kb on + strand, within GFF242at 247.187 kb on + strandat 247.187 kb on + strandat 247.193 kb on + strandat 247.193 kb on + strandat 247.193 kb on + strandat 247.198 kb on + strandat 247.208 kb on + strandat 247.222 kb on - strandat 247.237 kb on - strandat 247.252 kb on - strandat 247.257 kb on + strandat 247.274 kb on + strandat 247.285 kb on + strandat 247.321 kb on - strandat 247.359 kb on - strand, within GFF243at 247.371 kb on - strand, within GFF243at 247.392 kb on + strand, within GFF243at 247.428 kb on - strand, within GFF243at 247.541 kb on + strand, within GFF243at 247.592 kb on - strand, within GFF243at 247.612 kb on - strand, within GFF243at 247.612 kb on - strand, within GFF243at 247.669 kb on + strand, within GFF243at 247.680 kb on + strand, within GFF243at 247.712 kb on + strand, within GFF243at 247.717 kb on + strand, within GFF243at 247.718 kb on - strand, within GFF243at 247.728 kb on + strand, within GFF243at 247.736 kb on - strand, within GFF243at 247.771 kb on - strand, within GFF243at 247.771 kb on - strand, within GFF243at 247.771 kb on - strand, within GFF243at 247.773 kb on + strand, within GFF243at 247.775 kb on + strand, within GFF243at 247.776 kb on - strand, within GFF243at 247.782 kb on + strand, within GFF243at 247.794 kb on + strand, within GFF243at 247.802 kb on - strand, within GFF243at 247.814 kb on - strand, within GFF243at 247.818 kb on + strand, within GFF243at 247.860 kb on + strand, within GFF243at 247.879 kb on - strand, within GFF243at 247.896 kb on - strand, within GFF243at 247.925 kb on + strand, within GFF243at 247.961 kb on - strand, within GFF243at 247.966 kb on - strand, within GFF243at 247.978 kb on - strand, within GFF243at 248.019 kb on - strandat 248.034 kb on - strandat 248.063 kb on - strandat 248.068 kb on + strandat 248.125 kb on + strandat 248.142 kb on + strandat 248.143 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction EMM_noCarbon with D-Glucose and Ammonium Sulfate
remove
245,608 - GFF240 0.80 -1.4
245,632 + GFF240 0.81 +0.9
245,632 + GFF240 0.81 +2.0
245,640 - GFF240 0.82 +0.8
245,640 - GFF240 0.82 +0.4
245,657 - GFF240 0.83 -0.1
245,691 - GFF240 0.85 -0.5
245,691 - GFF240 0.85 -0.9
245,701 + GFF240 0.86 -0.5
245,720 + GFF240 0.87 -0.3
245,730 + GFF240 0.88 -0.4
245,730 + GFF240 0.88 -0.7
245,796 - -0.5
245,828 - -0.3
245,885 + -0.6
245,911 + -0.2
245,911 + +0.1
245,931 - +0.4
245,962 + -1.1
245,964 + -2.1
245,964 + +0.1
245,964 + -0.1
245,964 + -2.4
245,964 + +0.8
245,964 + +1.5
245,964 + -1.6
245,965 - -1.3
245,972 - +0.3
245,972 - -2.3
245,972 - +0.6
245,987 + +1.1
246,023 - -0.3
246,072 - GFF241 0.21 -0.4
246,092 - GFF241 0.26 -0.4
246,137 - GFF241 0.37 -0.9
246,137 - GFF241 0.37 +0.1
246,193 + GFF241 0.50 -0.1
246,253 + GFF241 0.64 +0.3
246,278 + GFF241 0.70 -0.5
246,286 - GFF241 0.72 -0.1
246,360 - GFF241 0.89 -1.3
246,368 - -0.2
246,457 + +0.5
246,457 + -1.5
246,457 + +1.0
246,465 - +0.4
246,467 + +1.7
246,467 + -1.9
246,475 - -0.4
246,477 + +1.3
246,485 - -0.2
246,499 - -0.8
246,511 - +1.8
246,543 + +0.3
246,543 - -1.1
246,552 - +0.3
246,563 + +0.5
246,563 + -0.7
246,581 - -1.0
246,595 + -0.1
246,635 + GFF242 0.12 -0.1
246,635 + GFF242 0.12 +0.1
246,640 + GFF242 0.13 +0.5
246,640 + GFF242 0.13 +0.2
246,640 + GFF242 0.13 -0.5
246,641 - GFF242 0.13 -0.6
246,648 - GFF242 0.14 -0.1
246,648 - GFF242 0.14 -0.5
246,648 - GFF242 0.14 -1.3
246,665 - GFF242 0.17 +0.9
246,704 + GFF242 0.22 -0.7
246,706 - GFF242 0.22 +0.5
246,709 + GFF242 0.23 -1.5
246,709 + GFF242 0.23 +0.3
246,712 - GFF242 0.23 +0.0
246,712 - GFF242 0.23 -2.1
246,727 - GFF242 0.25 +0.3
246,777 + GFF242 0.32 +0.9
246,785 - GFF242 0.34 -0.9
246,790 - GFF242 0.34 -0.9
246,792 + GFF242 0.35 +1.2
246,792 + GFF242 0.35 -1.2
246,795 - GFF242 0.35 +0.4
246,843 + GFF242 0.42 +1.0
246,858 + GFF242 0.44 +1.3
246,874 - GFF242 0.46 -0.8
246,885 + GFF242 0.48 -1.4
246,893 - GFF242 0.49 +0.9
246,899 + GFF242 0.50 -0.8
246,923 - GFF242 0.53 -0.9
246,962 - GFF242 0.59 -0.5
247,030 + GFF242 0.68 +0.5
247,077 + GFF242 0.75 -0.8
247,131 + GFF242 0.82 +0.3
247,169 + GFF242 0.88 -0.5
247,187 + +1.0
247,187 + +0.7
247,193 + -0.1
247,193 + +0.8
247,193 + +0.3
247,198 + -1.0
247,208 + +0.6
247,222 - +0.5
247,237 - +1.3
247,252 - -0.2
247,257 + -2.3
247,274 + -1.5
247,285 + -2.9
247,321 - -0.4
247,359 - GFF243 0.13 -1.9
247,371 - GFF243 0.15 -1.1
247,392 + GFF243 0.17 -1.0
247,428 - GFF243 0.21 -2.0
247,541 + GFF243 0.34 -0.7
247,592 - GFF243 0.40 -0.6
247,612 - GFF243 0.43 -1.0
247,612 - GFF243 0.43 -0.1
247,669 + GFF243 0.49 +0.9
247,680 + GFF243 0.51 -1.3
247,712 + GFF243 0.54 +0.3
247,717 + GFF243 0.55 -0.0
247,718 - GFF243 0.55 -1.2
247,728 + GFF243 0.56 +0.7
247,736 - GFF243 0.57 -2.3
247,771 - GFF243 0.61 -1.1
247,771 - GFF243 0.61 +0.3
247,771 - GFF243 0.61 -1.9
247,773 + GFF243 0.62 -0.1
247,775 + GFF243 0.62 -2.8
247,776 - GFF243 0.62 -1.7
247,782 + GFF243 0.63 -1.5
247,794 + GFF243 0.64 -0.7
247,802 - GFF243 0.65 -0.3
247,814 - GFF243 0.66 -1.8
247,818 + GFF243 0.67 -1.1
247,860 + GFF243 0.72 -0.2
247,879 - GFF243 0.74 -2.1
247,896 - GFF243 0.76 +1.3
247,925 + GFF243 0.79 -0.4
247,961 - GFF243 0.84 -3.0
247,966 - GFF243 0.84 -0.1
247,978 - GFF243 0.85 -0.2
248,019 - -2.2
248,034 - -0.6
248,063 - -1.2
248,068 + -0.1
248,125 + +0.9
248,142 + +0.0
248,143 - +0.9

Or see this region's nucleotide sequence