Strain Fitness in Sphingobium sp. HT1-2 around GFF2374

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
2,396,015	-		GFF2372	0.79	-0.1
2,396,033	-		GFF2372	0.82	+0.1
2,396,043	+		GFF2372	0.83	+0.5
2,396,043	+		GFF2372	0.83	+1.2
2,396,043	+		GFF2372	0.83	+1.3
2,396,043	+		GFF2372	0.83	-1.3
2,396,043	+		GFF2372	0.83	-0.5
2,396,049	+		GFF2372	0.84	-1.1
2,396,049	+		GFF2372	0.84	-0.3
2,396,051	-		GFF2372	0.84	-0.4
2,396,051	-		GFF2372	0.84	-0.3
2,396,051	-		GFF2372	0.84	-0.1
2,396,051	-		GFF2372	0.84	+0.0
2,396,051	-		GFF2372	0.84	-0.2
2,396,051	-		GFF2372	0.84	+0.3
2,396,051	-		GFF2372	0.84	+0.8
2,396,051	-		GFF2372	0.84	-0.4
2,396,054	+		GFF2372	0.84	+0.6
2,396,054	+		GFF2372	0.84	-0.5
2,396,054	+		GFF2372	0.84	-1.7
2,396,056	-		GFF2372	0.85	+1.0
2,396,057	-		GFF2372	0.85	+1.4
2,396,057	-		GFF2372	0.85	-1.2
2,396,057	-		GFF2372	0.85	+1.3
2,396,059	+		GFF2372	0.85	-0.4
2,396,062	-		GFF2372	0.86	+0.3
2,396,062	-		GFF2372	0.86	-0.1
2,396,062	-		GFF2372	0.86	-1.8
2,396,062	-		GFF2372	0.86	-0.9
2,396,062	-		GFF2372	0.86	-1.1
2,396,094	+				-0.1
2,396,094	+				-0.4
2,396,096	-				-1.1
2,396,099	+				-0.8
2,396,099	+				-0.5
2,396,099	+				+0.6
2,396,099	+				+0.3
2,396,107	-				+0.3
2,396,107	-				-0.3
2,396,109	+				+0.7
2,396,109	+				-0.2
2,396,109	+				+0.9
2,396,109	+				-1.0
2,396,109	+				+0.0
2,396,109	+				-0.5
2,396,109	+				+0.6
2,396,117	-				+0.0
2,396,117	-				+0.7
2,396,117	-				+0.4
2,396,121	-				+0.7
2,396,133	+				+0.4
2,396,136	+				+0.8
2,396,144	-				-1.7
2,396,151	+				+0.8
2,396,151	+				-0.3
2,396,154	-				-0.4
2,396,159	-				+0.8
2,396,159	-				-0.1
2,396,159	-				+1.3
2,396,167	+				+0.1
2,396,172	+				-0.8
2,396,177	+				-0.9
2,396,204	-				-0.3
2,396,215	+				+0.6
2,396,223	-				-0.9
2,396,223	-				-0.5
2,396,259	+		GFF2373	0.12	+0.4
2,396,259	+		GFF2373	0.12	-1.2
2,396,259	+		GFF2373	0.12	+0.5
2,396,264	+		GFF2373	0.12	+0.8
2,396,267	-		GFF2373	0.13	-0.1
2,396,267	-		GFF2373	0.13	+0.6
2,396,267	-		GFF2373	0.13	+0.4
2,396,288	+		GFF2373	0.15	+1.7
2,396,302	-		GFF2373	0.17	+1.1
2,396,316	+		GFF2373	0.19	+0.6
2,396,332	-		GFF2373	0.21	-0.1
2,396,373	-		GFF2373	0.26	+1.3
2,396,409	+		GFF2373	0.31	-1.2
2,396,420	+		GFF2373	0.32	+0.7
2,396,467	+		GFF2373	0.39	+0.1
2,396,494	-		GFF2373	0.42	+0.1
2,396,566	-		GFF2373	0.51	-0.5
2,396,579	+		GFF2373	0.53	-1.4
2,396,615	+		GFF2373	0.58	+0.5
2,396,618	-		GFF2373	0.58	-0.1
2,396,658	+		GFF2373	0.63	-0.3
2,396,668	+		GFF2373	0.65	+0.3
2,396,671	-		GFF2373	0.65	-0.4
2,396,700	-		GFF2373	0.69	+0.4
2,396,722	-		GFF2373	0.72	-0.4
2,396,738	+		GFF2373	0.74	+1.7
2,396,746	-		GFF2373	0.75	+0.2
2,396,817	-		GFF2373	0.84	+0.3
2,396,817	-		GFF2373	0.84	+0.0
2,396,838	-		GFF2373	0.87	+0.0
2,396,860	-		GFF2373	0.89	+0.2
2,396,944	-				-1.5
2,396,954	-				-0.8
2,396,955	-				-0.6
2,396,976	+				+0.6
2,396,981	+				-0.2
2,396,986	+				-0.5
2,397,037	+				-0.3
2,397,076	+				+1.8
2,397,094	-				+0.4
2,397,098	+				-0.1
2,397,166	+		GFF2374	0.14	-0.6
2,397,280	-		GFF2374	0.24	+0.2
2,397,280	-		GFF2374	0.24	+1.1
2,397,280	-		GFF2374	0.24	-0.2
2,397,285	-		GFF2374	0.24	+0.6
2,397,287	+		GFF2374	0.25	+1.2
2,397,314	+		GFF2374	0.27	+0.3
2,397,351	+		GFF2374	0.30	+1.4
2,397,364	-		GFF2374	0.31	+0.4
2,397,399	+		GFF2374	0.34	+1.5
2,397,404	+		GFF2374	0.34	-0.7
2,397,404	+		GFF2374	0.34	-0.0
2,397,404	+		GFF2374	0.34	-0.3
2,397,412	-		GFF2374	0.35	+0.5
2,397,417	+		GFF2374	0.36	-0.1
2,397,446	+		GFF2374	0.38	+0.2
2,397,446	+		GFF2374	0.38	-0.6
2,397,454	-		GFF2374	0.39	+0.6
2,397,454	-		GFF2374	0.39	+0.2
2,397,454	-		GFF2374	0.39	-0.3
2,397,470	+		GFF2374	0.40	-1.4
2,397,470	+		GFF2374	0.40	-0.4
2,397,480	+		GFF2374	0.41	+1.3
2,397,488	-		GFF2374	0.42	-0.1
2,397,488	-		GFF2374	0.42	-0.5
2,397,509	+		GFF2374	0.43	+0.2
2,397,509	+		GFF2374	0.43	+0.5
2,397,509	+		GFF2374	0.43	+1.1
2,397,509	+		GFF2374	0.43	+0.0
2,397,517	-		GFF2374	0.44	+0.0
2,397,517	-		GFF2374	0.44	-0.1
2,397,517	-		GFF2374	0.44	-0.3
2,397,517	-		GFF2374	0.44	-1.5
2,397,517	-		GFF2374	0.44	-2.1
2,397,532	+		GFF2374	0.45	-1.3
2,397,551	+		GFF2374	0.47	+0.4
2,397,551	+		GFF2374	0.47	-1.2
2,397,574	+		GFF2374	0.49	+0.2
2,397,574	+		GFF2374	0.49	-1.4
2,397,574	+		GFF2374	0.49	-1.4
2,397,582	-		GFF2374	0.49	+1.6
2,397,582	-		GFF2374	0.49	+0.9
2,397,583	+		GFF2374	0.50	-0.8
2,397,584	+		GFF2374	0.50	-0.8
2,397,591	-		GFF2374	0.50	+0.1
2,397,592	-		GFF2374	0.50	+0.5
2,397,634	+		GFF2374	0.54	-0.1
2,397,644	+		GFF2374	0.55	+0.2
2,397,644	+		GFF2374	0.55	-2.3
2,397,657	-		GFF2374	0.56	-0.5
2,397,657	-		GFF2374	0.56	+0.2
2,397,659	+		GFF2374	0.56	-0.2
2,397,659	+		GFF2374	0.56	+0.5
2,397,659	+		GFF2374	0.56	+0.1
2,397,659	+		GFF2374	0.56	-0.1
2,397,659	+		GFF2374	0.56	+0.4
2,397,659	+		GFF2374	0.56	+1.1
2,397,667	-		GFF2374	0.57	-2.1
2,397,689	+		GFF2374	0.59	+0.0
2,397,716	-		GFF2374	0.61	-1.1
2,397,716	-		GFF2374	0.61	+0.1
2,397,788	-		GFF2374	0.67	+0.6
2,397,804	-		GFF2374	0.68	-1.3
2,397,804	-		GFF2374	0.68	+0.4
2,397,811	+		GFF2374	0.69	+0.5
2,397,821	+		GFF2374	0.70	-0.9
2,397,832	-		GFF2374	0.71	-1.7
2,397,844	+		GFF2374	0.72	-0.2
2,397,844	+		GFF2374	0.72	+1.5
2,397,844	+		GFF2374	0.72	-1.1
2,397,844	+		GFF2374	0.72	+1.9
2,397,852	-		GFF2374	0.72	+0.8
2,397,852	-		GFF2374	0.72	-0.3
2,397,852	-		GFF2374	0.72	+1.6
2,397,882	+		GFF2374	0.75	-0.8
2,397,890	-		GFF2374	0.76	+0.0
2,397,903	+		GFF2374	0.77	+0.9
2,397,935	-		GFF2374	0.79	+0.4
2,397,956	-		GFF2374	0.81	-1.5
2,397,965	+		GFF2374	0.82	-0.4
2,397,965	+		GFF2374	0.82	+0.1
2,397,966	+		GFF2374	0.82	+0.0
2,397,998	+		GFF2374	0.85	-0.1
2,398,010	+		GFF2374	0.86	+1.0
2,398,016	+		GFF2374	0.86	-0.1
2,398,021	+		GFF2374	0.87	+0.5
2,398,021	+		GFF2374	0.87	-1.1
2,398,024	-		GFF2374	0.87	+0.7
2,398,029	-		GFF2374	0.87	-0.4
2,398,050	+		GFF2374	0.89	+1.7
2,398,056	+		GFF2374	0.90	+1.3
2,398,058	+		GFF2374	0.90	+1.0
2,398,063	+				+0.6
2,398,066	-				-0.3
2,398,076	-				-0.3
2,398,082	+				+0.9
2,398,105	-				-0.6
2,398,126	+				-0.5
2,398,163	+				+0.7
2,398,209	+				+0.5
2,398,231	+				-0.1
2,398,265	+				-0.1
2,398,299	+				+1.3
2,398,352	+				+1.3
2,398,353	-				+1.0
2,398,380	-				-1.1
2,398,387	+				-0.7
2,398,395	-				+0.7
2,398,453	-		GFF2375	0.14	-0.1
2,398,480	+		GFF2375	0.17	+0.6
2,398,523	+		GFF2375	0.22	+0.1
2,398,530	+		GFF2375	0.23	+0.2
2,398,531	-		GFF2375	0.23	+0.0
2,398,531	-		GFF2375	0.23	-2.3
2,398,536	-		GFF2375	0.23	+0.2
2,398,536	-		GFF2375	0.23	-0.8
2,398,536	-		GFF2375	0.23	-0.9
2,398,536	-		GFF2375	0.23	+0.6
2,398,550	+		GFF2375	0.25	+0.0
2,398,631	+		GFF2375	0.34	-1.2
2,398,655	+		GFF2375	0.37	-0.0
2,398,661	+		GFF2375	0.38	-1.5
2,398,661	+		GFF2375	0.38	-2.2
2,398,669	-		GFF2375	0.38	-0.5
2,398,699	+		GFF2375	0.42	-0.4
2,398,699	+		GFF2375	0.42	-0.9
2,398,707	-		GFF2375	0.43	-3.1
2,398,764	+		GFF2375	0.49	-0.2
2,398,772	-		GFF2375	0.50	-1.6
2,398,792	-		GFF2375	0.52	-0.8
2,398,821	+		GFF2375	0.56	-0.1
2,398,829	-		GFF2375	0.57	+0.1
2,398,856	+		GFF2375	0.60	+1.3
2,398,860	-		GFF2375	0.60	+1.8
2,398,918	-		GFF2375	0.67	+1.3
2,398,930	-		GFF2375	0.68	+0.9
2,398,955	-		GFF2375	0.71	-2.2
2,398,967	+		GFF2375	0.72	-0.0
2,398,967	+		GFF2375	0.72	-1.3
2,398,967	+		GFF2375	0.72	-0.4
2,398,973	-		GFF2375	0.73	+1.2
2,398,974	-		GFF2375	0.73	-1.3
2,398,975	-		GFF2375	0.73	+0.5
2,398,975	-		GFF2375	0.73	+0.0
2,399,030	+		GFF2375	0.79	+0.8
2,399,031	-		GFF2375	0.79	-0.9
2,399,038	-		GFF2375	0.80	+1.3
2,399,038	-		GFF2375	0.80	+0.0
2,399,038	-		GFF2375	0.80	+0.1
2,399,039	+		GFF2375	0.80	-0.1
2,399,070	+		GFF2375	0.84	-0.5
2,399,071	+		GFF2375	0.84	+0.3
2,399,075	+		GFF2375	0.84	+0.4
2,399,075	+		GFF2375	0.84	-1.8
2,399,078	-		GFF2375	0.85	+1.6
2,399,083	-		GFF2375	0.85	+0.6
2,399,083	-		GFF2375	0.85	-0.4
2,399,083	-		GFF2375	0.85	-0.9
2,399,083	-		GFF2375	0.85	-0.4
2,399,083	-		GFF2375	0.85	-0.3
2,399,093	-		GFF2375	0.87	+0.4
2,399,114	+		GFF2375	0.89	+0.7
2,399,130	-				+1.0
2,399,156	+				+0.3
2,399,156	+				+0.0
2,399,156	+				+0.1
2,399,156	+				+0.8
2,399,159	-				+0.6