Strain Fitness in Sphingobium sp. HT1-2 around GFF2167

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
2,187,391	+				-0.5
2,187,447	+				+0.1
2,187,453	-				+0.7
2,187,460	+				-2.5
2,187,468	-				-0.4
2,187,470	+				-0.9
2,187,473	-				-1.1
2,187,473	-				+0.7
2,187,473	-				-0.4
2,187,473	-				+1.1
2,187,481	+				-0.0
2,187,485	-				-0.2
2,187,486	+				+0.3
2,187,486	+				-0.6
2,187,486	+				-1.5
2,187,486	+				+1.1
2,187,489	-				-0.4
2,187,494	-				-0.2
2,187,494	-				-1.7
2,187,494	-				-0.3
2,187,494	-				-0.5
2,187,494	-				-0.7
2,187,502	+				+0.0
2,187,503	+				-1.1
2,187,510	-				-0.3
2,187,510	-				-0.8
2,187,517	+				+0.5
2,187,524	+				-0.4
2,187,524	+				-0.3
2,187,524	+				+0.3
2,188,073	-				+0.2
2,188,074	-				-0.2
2,188,075	-				+1.1
2,188,082	+				-0.4
2,188,117	-				+0.9
2,188,120	-				-1.0
2,188,131	+				-1.4
2,188,139	-				-0.2
2,188,180	+				-2.1
2,188,231	-				+0.5
2,188,257	+				-0.4
2,188,257	+				-0.7
2,188,265	-				-0.1
2,188,265	-				+0.9
2,188,275	-				+0.2
2,188,275	-				-0.6
2,188,275	-				-1.6
2,188,287	+				+1.8
2,188,295	-				+0.3
2,188,296	-				+1.0
2,188,296	-				-0.6
2,188,296	-				-0.3
2,188,296	-				-0.7
2,188,296	-				+0.4
2,188,296	-				+0.6
2,188,296	-				-0.7
2,188,296	-				-0.6
2,188,296	-				+1.0
2,188,296	-				-1.9
2,188,356	+				-1.6
2,188,364	-				-1.3
2,188,371	+				+0.7
2,188,373	+				-1.7
2,188,373	+				-0.4
2,188,386	-				+0.3
2,188,388	+				+0.4
2,188,388	-				+0.1
2,188,390	+				+0.3
2,188,409	-				+0.4
2,188,423	+				+0.2
2,188,431	-				+0.5
2,188,436	+		GFF2167	0.11	+0.3
2,188,444	-		GFF2167	0.12	-2.3
2,188,454	+		GFF2167	0.14	+0.4
2,188,465	-		GFF2167	0.16	-0.9
2,188,477	-		GFF2167	0.18	-1.6
2,188,477	-		GFF2167	0.18	-0.4
2,188,477	-		GFF2167	0.18	-1.9
2,188,511	+		GFF2167	0.25	-0.8
2,188,529	+		GFF2167	0.28	+0.6
2,188,539	-		GFF2167	0.30	+0.1
2,188,546	+		GFF2167	0.31	-0.2
2,188,556	-		GFF2167	0.33	-0.0
2,188,581	+		GFF2167	0.38	+1.0
2,188,589	+		GFF2167	0.39	+0.0
2,188,589	-		GFF2167	0.39	-0.0
2,188,589	-		GFF2167	0.39	+0.1
2,188,591	-		GFF2167	0.39	-1.0
2,188,602	-		GFF2167	0.41	+1.5
2,188,643	+		GFF2167	0.49	-0.3
2,188,653	+		GFF2167	0.51	-0.4
2,188,658	-		GFF2167	0.52	-1.0
2,188,658	-		GFF2167	0.52	-0.0
2,188,663	+		GFF2167	0.53	+0.1
2,188,663	+		GFF2167	0.53	-2.3
2,188,668	+		GFF2167	0.54	-1.9
2,188,668	+		GFF2167	0.54	-2.1
2,188,671	-		GFF2167	0.54	-0.4
2,188,673	+		GFF2167	0.55	-1.3
2,188,673	+		GFF2167	0.55	+0.8
2,188,673	+		GFF2167	0.55	+0.4
2,188,673	+		GFF2167	0.55	+1.0
2,188,676	-		GFF2167	0.55	+0.5
2,188,676	-		GFF2167	0.55	-0.1
2,188,676	-		GFF2167	0.55	-0.1
2,188,678	+		GFF2167	0.55	+1.1
2,188,681	-		GFF2167	0.56	+0.1
2,188,681	-		GFF2167	0.56	+0.2
2,188,681	-		GFF2167	0.56	-0.3
2,188,684	+		GFF2167	0.57	-0.7
2,188,715	+		GFF2167	0.62	-1.2
2,188,715	+		GFF2167	0.62	+0.6
2,188,720	+		GFF2167	0.63	-0.0
2,188,725	+		GFF2167	0.64	-0.8
2,188,730	+		GFF2167	0.65	-2.1
2,188,730	+		GFF2167	0.65	-1.0
2,188,732	+		GFF2167	0.65	-1.7
2,188,733	-		GFF2167	0.66	-0.9
2,188,734	-		GFF2167	0.66	-1.7
2,188,736	+		GFF2167	0.66	-1.2
2,188,738	-		GFF2167	0.66	-1.6
2,188,738	-		GFF2167	0.66	-0.3
2,188,740	-		GFF2167	0.67	+0.3
2,188,746	+		GFF2167	0.68	+0.6
2,188,751	+		GFF2167	0.69	-0.8
2,188,789	-		GFF2167	0.76	+0.5
2,188,791	+		GFF2167	0.76	+0.7
2,188,791	+		GFF2167	0.76	-1.1
2,188,791	+		GFF2167	0.76	-0.5
2,188,791	+		GFF2167	0.76	-0.6
2,188,791	+		GFF2167	0.76	-0.1
2,188,791	+		GFF2167	0.76	-0.8
2,188,791	+		GFF2167	0.76	+0.1
2,188,791	+		GFF2167	0.76	+1.1
2,188,791	+		GFF2167	0.76	+0.4
2,188,791	+		GFF2167	0.76	-0.2
2,188,791	+		GFF2167	0.76	+0.5
2,188,791	+		GFF2167	0.76	+0.8
2,188,791	+		GFF2167	0.76	-0.1
2,188,791	+		GFF2167	0.76	-0.7
2,188,792	+		GFF2167	0.76	-1.6
2,188,792	+		GFF2167	0.76	-0.8
2,188,792	+		GFF2167	0.76	+0.6
2,188,792	+		GFF2167	0.76	-0.3
2,188,792	-		GFF2167	0.76	-0.5
2,188,793	-		GFF2167	0.77	+0.5
2,188,799	-		GFF2167	0.78	+0.5
2,188,799	-		GFF2167	0.78	-0.5
2,188,799	-		GFF2167	0.78	-1.1
2,188,799	-		GFF2167	0.78	-0.4
2,188,799	-		GFF2167	0.78	-0.2
2,188,799	-		GFF2167	0.78	-0.7
2,188,799	-		GFF2167	0.78	-0.3
2,188,799	-		GFF2167	0.78	-1.3
2,188,799	-		GFF2167	0.78	-0.1
2,188,799	-		GFF2167	0.78	-2.3
2,188,799	-		GFF2167	0.78	+0.3
2,188,799	-		GFF2167	0.78	-1.4
2,188,799	-		GFF2167	0.78	-0.1
2,188,799	-		GFF2167	0.78	-1.8
2,188,799	-		GFF2167	0.78	+0.7
2,188,799	-		GFF2167	0.78	-0.5
2,188,799	-		GFF2167	0.78	+0.6
2,188,829	+		GFF2167	0.83	-0.7
2,188,836	+		GFF2167	0.85	+0.6
2,188,836	+		GFF2167	0.85	-1.7
2,188,844	-		GFF2167	0.86	+0.2
2,188,847	-		GFF2167	0.87	-1.0
2,188,849	+		GFF2167	0.87	-1.2
2,188,849	+		GFF2167	0.87	+1.5
2,188,857	-		GFF2167	0.88	-0.9
2,188,858	+		GFF2167	0.89	+0.1
2,188,867	+				+1.2
2,188,875	+				-0.5
2,188,875	+				+0.4
2,188,875	-				-1.1
2,188,883	-				+0.5
2,188,888	-				-2.0
2,188,893	+				+1.6
2,188,899	+				-0.2
2,188,906	-				-1.4
2,188,913	+				+0.6
2,188,931	+				-1.5
2,188,943	+				-1.8
2,188,943	+				-2.5
2,188,945	+				+1.2
2,188,974	-				-2.2
2,188,974	-				-0.0
2,188,981	+				+0.8
2,188,981	+				+0.0
2,188,996	+		GFF2168	0.11	-0.3
2,189,006	+		GFF2168	0.12	-0.4
2,189,007	+		GFF2168	0.13	+0.5
2,189,010	+		GFF2168	0.13	-1.5
2,189,010	+		GFF2168	0.13	-0.2
2,189,010	+		GFF2168	0.13	-0.9
2,189,018	-		GFF2168	0.14	-0.4
2,189,018	-		GFF2168	0.14	-1.5
2,189,044	+		GFF2168	0.18	-0.5
2,189,044	+		GFF2168	0.18	+1.5
2,189,044	+		GFF2168	0.18	-0.7
2,189,101	-		GFF2168	0.26	-0.5
2,189,101	-		GFF2168	0.26	+0.1
2,189,106	-		GFF2168	0.27	-2.2
2,189,119	-		GFF2168	0.29	-2.1
2,189,124	+		GFF2168	0.29	+0.4
2,189,140	+		GFF2168	0.32	+0.8
2,189,163	-		GFF2168	0.35	-1.2
2,189,168	-		GFF2168	0.36	-0.2
2,189,176	-		GFF2168	0.37	-0.2
2,189,192	-		GFF2168	0.39	-0.3
2,189,194	+		GFF2168	0.39	+0.5
2,189,201	+		GFF2168	0.40	-0.7
2,189,201	+		GFF2168	0.40	-1.9
2,189,202	-		GFF2168	0.40	-1.0
2,189,202	-		GFF2168	0.40	+0.8
2,189,206	+		GFF2168	0.41	+0.3
2,189,206	+		GFF2168	0.41	-1.7
2,189,218	+		GFF2168	0.43	+0.3
2,189,219	-		GFF2168	0.43	-0.2
2,189,219	-		GFF2168	0.43	+0.3
2,189,223	+		GFF2168	0.43	-0.3
2,189,247	-		GFF2168	0.47	+0.7
2,189,271	-		GFF2168	0.50	-2.7
2,189,292	-		GFF2168	0.53	-0.4
2,189,305	+		GFF2168	0.55	-0.4
2,189,307	-		GFF2168	0.56	-1.9
2,189,310	+		GFF2168	0.56	-2.1
2,189,310	+		GFF2168	0.56	-0.4
2,189,316	-		GFF2168	0.57	-0.1
2,189,318	-		GFF2168	0.57	+0.3
2,189,332	+		GFF2168	0.59	-0.4
2,189,343	+		GFF2168	0.61	-0.4
2,189,353	+		GFF2168	0.62	-1.6
2,189,353	+		GFF2168	0.62	+0.1
2,189,353	+		GFF2168	0.62	-0.5
2,189,361	-		GFF2168	0.63	+0.9
2,189,361	-		GFF2168	0.63	-0.4
2,189,361	-		GFF2168	0.63	-1.7
2,189,379	+		GFF2168	0.66	-0.7
2,189,382	+		GFF2168	0.66	+0.0
2,189,402	+		GFF2168	0.69	-0.1
2,189,404	+		GFF2168	0.69	-0.2
2,189,420	-		GFF2168	0.72	+0.6
2,189,425	+		GFF2168	0.72	-1.2
2,189,428	-		GFF2168	0.73	-0.7
2,189,433	-		GFF2168	0.74	-0.6
2,189,435	+		GFF2168	0.74	-0.4
2,189,441	-		GFF2168	0.75	+0.4
2,189,446	+		GFF2168	0.75	+1.8
2,189,454	-		GFF2168	0.77	+1.1
2,189,496	-		GFF2168	0.83	+0.8
2,189,516	-		GFF2168	0.85	-0.1
2,189,525	-		GFF2168	0.87	-0.7
2,189,528	+		GFF2168	0.87	+0.1
2,189,539	+		GFF2168	0.89	+0.7
2,189,539	+		GFF2168	0.89	-1.4
2,189,547	-		GFF2168	0.90	+0.2
2,189,557	+				-0.1
2,189,558	-				+0.2
2,189,564	+				+1.6
2,189,565	-				-1.1
2,189,572	-				-2.6
2,189,587	+				+0.6
2,189,595	-				-0.0
2,189,598	+				+0.6
2,189,606	-				+0.3
2,189,606	-				-0.3
2,189,606	-				+0.4
2,189,606	-				+0.9
2,189,606	-				-0.2
2,189,606	-				+0.2
2,189,619	-				+0.1
2,189,623	+				-0.7
2,189,626	-				+1.2
2,189,626	-				-0.6
2,189,631	-				+0.5
2,189,631	-				-0.3
2,189,631	-				-0.8
2,189,643	-				+0.8
2,189,669	-				-0.6
2,189,675	-				-0.9
2,189,741	-				-0.4
2,189,803	+				+0.4
2,189,825	+				+0.3
2,189,859	+		GFF2169	0.13	+0.6
2,189,859	+		GFF2169	0.13	+1.5
2,189,859	+		GFF2169	0.13	-0.2
2,189,862	-		GFF2169	0.14	-0.6
2,189,864	+		GFF2169	0.15	-0.7
2,189,864	+		GFF2169	0.15	+0.2
2,189,890	-		GFF2169	0.22	+0.9
2,189,901	-		GFF2169	0.25	-1.7