Strain Fitness in Sphingobium sp. HT1-2 around GFF1935

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
1,958,918	-		GFF1934	0.47	-0.5
1,958,918	-		GFF1934	0.47	+1.1
1,958,918	-		GFF1934	0.47	-0.1
1,958,918	-		GFF1934	0.47	-0.8
1,958,918	-		GFF1934	0.47	-0.5
1,958,918	-		GFF1934	0.47	+0.3
1,958,923	-		GFF1934	0.47	-0.3
1,958,923	-		GFF1934	0.47	-0.4
1,958,923	-		GFF1934	0.47	-2.4
1,958,942	-		GFF1934	0.49	+0.3
1,958,953	-		GFF1934	0.50	+0.1
1,958,963	-		GFF1934	0.50	+0.9
1,958,980	+		GFF1934	0.52	-1.1
1,958,980	+		GFF1934	0.52	-0.6
1,958,980	+		GFF1934	0.52	-0.8
1,958,988	-		GFF1934	0.52	+0.2
1,958,988	-		GFF1934	0.52	+0.0
1,958,988	-		GFF1934	0.52	-1.3
1,958,998	-		GFF1934	0.53	+0.3
1,959,000	+		GFF1934	0.53	-1.3
1,959,022	-		GFF1934	0.55	+0.2
1,959,034	+		GFF1934	0.56	+0.0
1,959,042	+		GFF1934	0.57	-2.1
1,959,042	+		GFF1934	0.57	-0.3
1,959,042	+		GFF1934	0.57	+0.9
1,959,060	+		GFF1934	0.58	+1.2
1,959,068	-		GFF1934	0.59	-0.5
1,959,072	+		GFF1934	0.59	+1.1
1,959,072	+		GFF1934	0.59	-1.7
1,959,080	-		GFF1934	0.60	+0.5
1,959,080	-		GFF1934	0.60	-1.3
1,959,086	+		GFF1934	0.60	-1.8
1,959,099	-		GFF1934	0.61	+0.4
1,959,099	-		GFF1934	0.61	-0.1
1,959,116	+		GFF1934	0.63	+1.4
1,959,124	-		GFF1934	0.63	+0.2
1,959,150	-		GFF1934	0.65	+1.1
1,959,152	+		GFF1934	0.66	+0.5
1,959,170	+		GFF1934	0.67	-0.3
1,959,173	-		GFF1934	0.67	-0.4
1,959,178	-		GFF1934	0.68	+1.1
1,959,200	+		GFF1934	0.69	-1.5
1,959,200	+		GFF1934	0.69	+0.5
1,959,200	+		GFF1934	0.69	+0.9
1,959,208	+		GFF1934	0.70	+1.8
1,959,208	+		GFF1934	0.70	+0.5
1,959,208	+		GFF1934	0.70	-0.3
1,959,208	+		GFF1934	0.70	-0.1
1,959,208	-		GFF1934	0.70	-0.0
1,959,208	-		GFF1934	0.70	+0.1
1,959,208	-		GFF1934	0.70	+0.8
1,959,208	-		GFF1934	0.70	-0.7
1,959,210	-		GFF1934	0.70	+0.2
1,959,215	+		GFF1934	0.71	+0.7
1,959,215	+		GFF1934	0.71	+0.3
1,959,216	-		GFF1934	0.71	+0.1
1,959,223	-		GFF1934	0.71	-0.2
1,959,274	-		GFF1934	0.75	-0.4
1,959,287	-		GFF1934	0.76	-0.3
1,959,293	+		GFF1934	0.77	+0.3
1,959,297	-		GFF1934	0.77	-0.4
1,959,301	-		GFF1934	0.78	-1.1
1,959,301	-		GFF1934	0.78	+0.4
1,959,301	-		GFF1934	0.78	-2.1
1,959,306	+		GFF1934	0.78	+1.5
1,959,321	+		GFF1934	0.79	+0.2
1,959,329	+		GFF1934	0.80	-1.9
1,959,329	+		GFF1934	0.80	-1.7
1,959,329	+		GFF1934	0.80	-0.3
1,959,329	+		GFF1934	0.80	-0.0
1,959,329	+		GFF1934	0.80	+0.4
1,959,329	+		GFF1934	0.80	-1.2
1,959,329	+		GFF1934	0.80	-0.5
1,959,329	+		GFF1934	0.80	-0.6
1,959,329	+		GFF1934	0.80	+0.1
1,959,329	+		GFF1934	0.80	-1.0
1,959,329	+		GFF1934	0.80	+1.5
1,959,329	+		GFF1934	0.80	-1.3
1,959,333	+		GFF1934	0.80	+0.1
1,959,337	-		GFF1934	0.81	-1.0
1,959,337	-		GFF1934	0.81	-0.3
1,959,337	-		GFF1934	0.81	-2.3
1,959,337	-		GFF1934	0.81	-0.9
1,959,337	-		GFF1934	0.81	+0.5
1,959,337	-		GFF1934	0.81	+0.1
1,959,337	-		GFF1934	0.81	+0.0
1,959,337	-		GFF1934	0.81	-1.0
1,959,337	-		GFF1934	0.81	-2.0
1,959,337	-		GFF1934	0.81	-1.3
1,959,337	-		GFF1934	0.81	-0.6
1,959,337	-		GFF1934	0.81	-0.9
1,959,337	-		GFF1934	0.81	+0.1
1,959,337	-		GFF1934	0.81	+0.2
1,959,337	-		GFF1934	0.81	+0.7
1,959,337	-		GFF1934	0.81	-0.9
1,959,351	+		GFF1934	0.82	+1.9
1,959,351	+		GFF1934	0.82	-1.3
1,959,376	-		GFF1934	0.84	-0.5
1,959,378	+		GFF1934	0.84	-0.1
1,959,381	-		GFF1934	0.84	-0.1
1,959,388	+		GFF1934	0.85	+0.8
1,959,391	-		GFF1934	0.85	-1.6
1,959,391	-		GFF1934	0.85	-0.0
1,959,394	+		GFF1934	0.85	-1.3
1,959,399	+		GFF1934	0.86	-0.1
1,959,407	-		GFF1934	0.86	-0.7
1,959,418	-		GFF1934	0.87	+0.3
1,959,439	+		GFF1934	0.89	-0.1
1,959,454	-				+0.5
1,959,470	+				+1.1
1,959,470	-				+0.3
1,959,478	-				-0.3
1,959,481	+				+0.2
1,959,482	+				+1.1
1,959,489	-				-0.1
1,959,489	-				+0.2
1,959,489	-				-2.2
1,959,489	-				+0.5
1,959,516	-				-0.6
1,959,539	+				+0.0
1,959,601	+				+1.3
1,959,609	-				+1.2
1,959,629	+				+0.4
1,959,637	-				-1.4
1,959,643	+				-0.6
1,959,652	-				+0.7
1,959,661	-				+0.5
1,959,701	+				-2.0
1,959,701	+				-1.3
1,959,701	+				+0.5
1,959,709	-				+0.5
1,959,709	-				+0.3
1,959,720	+				-0.6
1,959,720	+				-0.3
1,959,724	+				+0.0
1,959,732	-				+1.2
1,959,732	-				-0.5
1,959,766	+				-2.0
1,959,772	-				-0.3
1,959,774	-				+0.8
1,959,809	+				+1.1
1,959,812	-				+0.6
1,959,817	-				+0.4
1,959,817	-				-0.6
1,959,845	-				+0.9
1,959,847	-				-1.7
1,959,874	+				-1.3
1,959,893	+				+0.7
1,959,893	+				+0.8
1,959,893	+				-0.2
1,959,901	-				-1.9
1,959,901	-				-0.6
1,959,945	+				+0.5
1,959,946	-				-0.5
1,959,959	-				+0.9
1,959,966	+				-1.7
1,959,966	+				-2.5
1,959,974	-		GFF1935	0.10	+0.1
1,959,974	-		GFF1935	0.10	-2.9
1,959,974	-		GFF1935	0.10	-0.9
1,959,975	+		GFF1935	0.10	-2.6
1,959,988	-		GFF1935	0.12	+0.1
1,960,008	+		GFF1935	0.14	+0.2
1,960,008	+		GFF1935	0.14	+0.8
1,960,013	+		GFF1935	0.15	+0.8
1,960,013	+		GFF1935	0.15	-1.6
1,960,031	+		GFF1935	0.17	+0.3
1,960,039	-		GFF1935	0.18	-2.2
1,960,107	+		GFF1935	0.25	+0.1
1,960,115	-		GFF1935	0.26	-2.2
1,960,115	-		GFF1935	0.26	-0.3
1,960,116	-		GFF1935	0.27	+1.5
1,960,132	+		GFF1935	0.28	-0.2
1,960,132	+		GFF1935	0.28	+0.8
1,960,134	+		GFF1935	0.29	+0.6
1,960,140	-		GFF1935	0.29	+0.2
1,960,140	-		GFF1935	0.29	-0.6
1,960,140	-		GFF1935	0.29	-1.9
1,960,140	-		GFF1935	0.29	+0.5
1,960,140	-		GFF1935	0.29	-0.8
1,960,140	-		GFF1935	0.29	+0.1
1,960,140	-		GFF1935	0.29	+0.4
1,960,140	-		GFF1935	0.29	-0.9
1,960,142	+		GFF1935	0.29	-0.2
1,960,150	+		GFF1935	0.30	+0.7
1,960,150	-		GFF1935	0.30	+0.3
1,960,193	-		GFF1935	0.35	-1.2
1,960,193	-		GFF1935	0.35	+0.4
1,960,254	-		GFF1935	0.42	+0.7
1,960,261	+		GFF1935	0.43	-0.2
1,960,269	-		GFF1935	0.44	-2.0
1,960,269	-		GFF1935	0.44	-1.2
1,960,269	-		GFF1935	0.44	-2.7
1,960,269	-		GFF1935	0.44	-2.6
1,960,280	-		GFF1935	0.45	-2.1
1,960,291	+		GFF1935	0.46	-0.6
1,960,304	+		GFF1935	0.48	-0.3
1,960,317	-		GFF1935	0.49	-0.5
1,960,322	+		GFF1935	0.50	-0.8
1,960,340	-		GFF1935	0.52	+0.1
1,960,340	-		GFF1935	0.52	-2.1
1,960,347	-		GFF1935	0.53	-0.5
1,960,347	-		GFF1935	0.53	+0.7
1,960,374	+		GFF1935	0.56	-2.5
1,960,374	+		GFF1935	0.56	+1.3
1,960,374	+		GFF1935	0.56	-1.8
1,960,382	-		GFF1935	0.57	-0.1
1,960,382	-		GFF1935	0.57	-0.4
1,960,382	-		GFF1935	0.57	+0.6
1,960,382	-		GFF1935	0.57	+0.5
1,960,382	-		GFF1935	0.57	+1.5
1,960,385	+		GFF1935	0.57	+0.5
1,960,387	+		GFF1935	0.57	-0.1
1,960,387	-		GFF1935	0.57	+1.0
1,960,387	-		GFF1935	0.57	+0.1
1,960,393	-		GFF1935	0.58	+0.3
1,960,395	-		GFF1935	0.58	-0.3
1,960,395	-		GFF1935	0.58	-0.3
1,960,395	-		GFF1935	0.58	+0.1
1,960,405	-		GFF1935	0.59	+0.7
1,960,422	-		GFF1935	0.61	-1.3
1,960,422	-		GFF1935	0.61	+0.3
1,960,430	+		GFF1935	0.62	-1.5
1,960,435	+		GFF1935	0.63	-0.5
1,960,442	-		GFF1935	0.64	-0.9
1,960,442	-		GFF1935	0.64	+0.4
1,960,450	-		GFF1935	0.65	+1.8
1,960,455	-		GFF1935	0.65	-1.3
1,960,456	+		GFF1935	0.65	-1.0
1,960,459	+		GFF1935	0.66	+0.8
1,960,468	-		GFF1935	0.67	-1.5
1,960,477	-		GFF1935	0.68	+1.5
1,960,478	-		GFF1935	0.68	-2.2
1,960,478	-		GFF1935	0.68	+0.9
1,960,482	+		GFF1935	0.68	+0.4
1,960,482	+		GFF1935	0.68	-1.8
1,960,482	+		GFF1935	0.68	-0.4
1,960,482	+		GFF1935	0.68	+1.1
1,960,487	+		GFF1935	0.69	-0.7
1,960,487	+		GFF1935	0.69	-1.9
1,960,487	+		GFF1935	0.69	-1.0
1,960,490	-		GFF1935	0.69	-0.6
1,960,490	-		GFF1935	0.69	+1.1
1,960,495	+		GFF1935	0.70	-0.0
1,960,495	-		GFF1935	0.70	+0.6
1,960,495	-		GFF1935	0.70	-1.3
1,960,495	-		GFF1935	0.70	-0.7
1,960,495	-		GFF1935	0.70	+1.2
1,960,503	-		GFF1935	0.71	-1.4
1,960,523	-		GFF1935	0.73	-1.2
1,960,523	-		GFF1935	0.73	-1.6
1,960,568	+		GFF1935	0.78	-0.2
1,960,568	+		GFF1935	0.78	-0.1
1,960,568	+		GFF1935	0.78	-0.2
1,960,568	+		GFF1935	0.78	+0.7
1,960,576	-		GFF1935	0.79	+0.7
1,960,576	-		GFF1935	0.79	+0.5
1,960,576	-		GFF1935	0.79	-1.3
1,960,601	+		GFF1935	0.82	-2.0
1,960,601	+		GFF1935	0.82	-0.0
1,960,601	+		GFF1935	0.82	-0.6
1,960,601	+		GFF1935	0.82	-0.7
1,960,601	+		GFF1935	0.82	+0.1
1,960,601	+		GFF1935	0.82	+0.2
1,960,601	+		GFF1935	0.82	-0.1
1,960,601	+		GFF1935	0.82	-2.0
1,960,601	+		GFF1935	0.82	+0.5
1,960,601	+		GFF1935	0.82	-0.5
1,960,601	+		GFF1935	0.82	-0.6
1,960,601	+		GFF1935	0.82	+1.1
1,960,601	+		GFF1935	0.82	-0.7
1,960,601	+		GFF1935	0.82	+1.5
1,960,601	+		GFF1935	0.82	-0.1
1,960,609	-		GFF1935	0.83	-0.7
1,960,609	-		GFF1935	0.83	-0.5
1,960,609	-		GFF1935	0.83	-0.5
1,960,609	-		GFF1935	0.83	-0.2
1,960,609	-		GFF1935	0.83	-1.0
1,960,609	-		GFF1935	0.83	+0.3
1,960,609	-		GFF1935	0.83	+0.3
1,960,609	-		GFF1935	0.83	-0.5
1,960,609	-		GFF1935	0.83	-0.6
1,960,611	-		GFF1935	0.83	-0.1
1,960,622	+		GFF1935	0.84	+0.2
1,960,624	+		GFF1935	0.84	+0.8
1,960,630	-		GFF1935	0.85	+1.0
1,960,664	+		GFF1935	0.89	-1.5
1,960,666	-		GFF1935	0.89	-0.3
1,960,700	+				-1.1
1,960,700	+				+0.4
1,960,708	-				+0.7
1,960,708	-				-0.1
1,960,708	-				+1.0
1,960,716	+				-0.5
1,960,721	+				+0.0
1,960,723	-				-0.5
1,960,723	-				-0.9
1,960,759	-				+1.0
1,960,816	+				-0.6
1,960,816	+				-1.7
1,960,824	-				+0.1
1,960,832	+				+0.5
1,960,848	-				-0.1
1,960,865	+				-0.1
1,960,877	+				+0.1
1,960,877	+				+0.1
1,960,883	+				+0.4
1,960,885	-				-0.6
1,960,885	-				+0.9
1,960,888	+				-1.3
1,960,896	+				+0.0
1,960,898	+				-0.1
1,960,904	-				+0.1
1,960,916	-				+0.0
1,960,972	+				-0.1
1,960,980	-				-0.4
1,960,981	-				+1.3
1,960,981	-				+0.4
1,960,981	-				-0.5
1,960,981	-				-1.7
1,960,993	+				+1.1
1,961,117	+		GFF1936	0.12	-2.5
1,961,117	+		GFF1936	0.12	+1.0
1,961,117	+		GFF1936	0.12	-0.2
1,961,127	+		GFF1936	0.13	-0.2
1,961,132	+		GFF1936	0.14	+0.6
1,961,132	+		GFF1936	0.14	+0.3
1,961,132	+		GFF1936	0.14	+0.9
1,961,132	+		GFF1936	0.14	-2.3
1,961,135	-		GFF1936	0.14	-0.7
1,961,137	+		GFF1936	0.14	-0.7
1,961,140	-		GFF1936	0.14	+0.8
1,961,140	-		GFF1936	0.14	-2.3
1,961,140	-		GFF1936	0.14	-0.6
1,961,140	-		GFF1936	0.14	-1.3
1,961,140	-		GFF1936	0.14	-0.4
1,961,145	-		GFF1936	0.15	+0.1
1,961,150	-		GFF1936	0.15	+0.2
1,961,165	-		GFF1936	0.16	+0.5
1,961,192	-		GFF1936	0.19	-0.1
1,961,220	-		GFF1936	0.21	-0.5
1,961,241	-		GFF1936	0.23	+0.5
1,961,247	+		GFF1936	0.24	+0.5
1,961,268	+		GFF1936	0.25	+1.5
1,961,270	-		GFF1936	0.26	+0.2
1,961,275	+		GFF1936	0.26	+0.9
1,961,300	+		GFF1936	0.28	+0.1
1,961,301	+		GFF1936	0.28	+0.0
1,961,336	+		GFF1936	0.31	+0.5
1,961,336	+		GFF1936	0.31	-2.1
1,961,336	+		GFF1936	0.31	-0.8
1,961,336	+		GFF1936	0.31	+0.8
1,961,344	-		GFF1936	0.32	+0.5
1,961,344	-		GFF1936	0.32	+0.2
1,961,346	-		GFF1936	0.32	+0.5
1,961,356	-		GFF1936	0.33	+1.0
1,961,360	+		GFF1936	0.33	+1.4
1,961,368	-		GFF1936	0.34	+0.7
1,961,393	+		GFF1936	0.36	+0.2
1,961,409	-		GFF1936	0.38	+0.4
1,961,417	-		GFF1936	0.38	-0.1
1,961,462	+		GFF1936	0.42	-1.8
1,961,462	+		GFF1936	0.42	-1.0
1,961,462	+		GFF1936	0.42	+0.8
1,961,469	-		GFF1936	0.43	-1.2
1,961,470	-		GFF1936	0.43	+0.5
1,961,470	-		GFF1936	0.43	-0.5
1,961,470	-		GFF1936	0.43	-0.1
1,961,472	+		GFF1936	0.43	+0.6
1,961,472	+		GFF1936	0.43	-1.2
1,961,472	+		GFF1936	0.43	+0.6
1,961,472	+		GFF1936	0.43	-0.7
1,961,480	-		GFF1936	0.44	+0.2
1,961,480	-		GFF1936	0.44	+0.2
1,961,480	-		GFF1936	0.44	+0.9
1,961,480	-		GFF1936	0.44	+0.1
1,961,480	-		GFF1936	0.44	+0.3
1,961,480	-		GFF1936	0.44	+0.8
1,961,482	+		GFF1936	0.44	-1.5
1,961,490	-		GFF1936	0.45	+0.9
1,961,492	+		GFF1936	0.45	+0.3
1,961,494	+		GFF1936	0.45	-1.5
1,961,520	-		GFF1936	0.47	+0.9
1,961,547	-		GFF1936	0.50	+1.0
1,961,561	-		GFF1936	0.51	-1.2
1,961,581	-		GFF1936	0.53	-1.7
1,961,586	-		GFF1936	0.53	-1.5
1,961,627	+		GFF1936	0.57	-0.6
1,961,642	+		GFF1936	0.58	+0.0
1,961,650	-		GFF1936	0.59	+0.4
1,961,652	-		GFF1936	0.59	+1.4
1,961,675	-		GFF1936	0.61	-0.1
1,961,677	+		GFF1936	0.61	-2.3
1,961,677	+		GFF1936	0.61	+0.7
1,961,678	-		GFF1936	0.61	+0.0
1,961,688	+		GFF1936	0.62	-2.4
1,961,690	-		GFF1936	0.62	+1.2
1,961,691	-		GFF1936	0.62	+0.6
1,961,707	+		GFF1936	0.64	-1.5
1,961,708	+		GFF1936	0.64	-1.1
1,961,719	-		GFF1936	0.65	+1.1
1,961,721	+		GFF1936	0.65	+1.4
1,961,726	+		GFF1936	0.65	-1.5
1,961,726	+		GFF1936	0.65	-1.0
1,961,734	-		GFF1936	0.66	-0.0