Strain Fitness in Sphingobium sp. HT1-2 around GFF1898

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
1,920,421	-		GFF1896	0.76	-1.3
1,920,421	-		GFF1896	0.76	+0.1
1,920,428	-		GFF1896	0.77	-1.8
1,920,428	-		GFF1896	0.77	-1.6
1,920,428	-		GFF1896	0.77	+1.0
1,920,449	-		GFF1896	0.80	+0.7
1,920,450	+		GFF1896	0.80	-0.2
1,920,471	-		GFF1896	0.83	-0.4
1,920,501	+		GFF1896	0.87	+0.6
1,920,521	+				-1.6
1,920,528	+				-1.1
1,920,545	+				-0.1
1,920,546	-				-0.1
1,920,553	-				-0.1
1,920,553	-				-1.1
1,920,553	-				+0.1
1,920,557	+				-0.1
1,920,565	-				-0.7
1,920,567	+				-0.0
1,920,574	+				-0.7
1,920,574	+				+1.3
1,920,574	+				+0.1
1,920,574	+				-0.3
1,920,574	+				-0.9
1,920,574	+				-0.6
1,920,574	+				+1.2
1,920,574	+				+0.3
1,920,582	-				-0.3
1,920,582	-				+0.2
1,920,582	-				-2.1
1,920,585	+				-0.6
1,920,585	+				-0.5
1,920,585	+				-2.7
1,920,585	+				+1.1
1,920,585	+				+0.7
1,920,585	+				-0.9
1,920,585	+				-1.9
1,920,585	+				-2.4
1,920,585	+				-0.1
1,920,585	+				-1.0
1,920,585	+				+0.9
1,920,593	-				-2.2
1,920,593	-				-0.8
1,920,593	-				+0.5
1,920,608	+				-0.5
1,920,608	+				-1.0
1,920,615	+				+0.9
1,920,615	+				+1.4
1,920,615	+				-2.3
1,920,616	-				-1.2
1,920,616	-				-1.2
1,920,616	-				-0.9
1,920,623	-				+0.6
1,920,626	+				-0.4
1,920,627	+				-0.7
1,920,632	+				-1.4
1,920,634	-				-0.1
1,920,659	+				-0.8
1,920,659	+				-0.6
1,920,659	+				-0.9
1,920,659	+				+1.1
1,920,659	+				+0.6
1,920,659	+				-0.3
1,920,659	+				+1.3
1,920,659	+				-0.8
1,920,660	+				+0.5
1,920,667	-				-1.5
1,920,667	-				-0.3
1,920,667	-				+0.6
1,920,667	-				-0.6
1,920,667	-				+1.1
1,920,675	+				+0.3
1,920,680	+				-0.3
1,920,680	+				+1.2
1,920,683	-				-1.1
1,920,685	+				-0.7
1,920,685	-				+0.5
1,920,687	+				+0.9
1,920,688	-				+0.3
1,920,688	-				+0.2
1,920,688	-				-1.1
1,920,695	+				+0.6
1,920,697	+				+0.5
1,920,701	-				+0.5
1,920,705	-				-0.7
1,920,741	+				-0.6
1,920,741	+				+0.0
1,920,741	+				+0.7
1,920,741	+				+2.1
1,920,741	+				+0.7
1,920,741	+				+0.3
1,920,749	-				+0.3
1,920,749	-				-0.7
1,920,780	+				-1.3
1,920,780	+				-1.0
1,920,788	-				-1.5
1,920,788	-				-1.6
1,920,797	+				-1.3
1,920,799	+				+0.6
1,920,854	+		GFF1897	0.12	-0.6
1,920,854	+		GFF1897	0.12	-0.5
1,920,854	+		GFF1897	0.12	-0.4
1,920,854	+		GFF1897	0.12	-2.0
1,920,860	-		GFF1897	0.14	-1.7
1,920,862	-		GFF1897	0.15	-0.9
1,920,910	+		GFF1897	0.29	+0.1
1,920,946	+		GFF1897	0.40	+0.7
1,920,952	+		GFF1897	0.42	-2.0
1,920,952	+		GFF1897	0.42	-0.3
1,920,952	+		GFF1897	0.42	-1.2
1,920,952	+		GFF1897	0.42	+0.5
1,920,954	-		GFF1897	0.43	+0.8
1,920,954	-		GFF1897	0.43	+1.0
1,920,958	+		GFF1897	0.44	-0.0
1,920,958	+		GFF1897	0.44	-0.1
1,920,958	+		GFF1897	0.44	-1.7
1,920,958	+		GFF1897	0.44	-0.8
1,920,958	+		GFF1897	0.44	+0.7
1,920,960	-		GFF1897	0.45	+0.9
1,920,960	-		GFF1897	0.45	-0.5
1,920,960	-		GFF1897	0.45	+0.1
1,920,966	-		GFF1897	0.46	+1.1
1,920,966	-		GFF1897	0.46	+0.3
1,920,966	-		GFF1897	0.46	-0.1
1,920,966	-		GFF1897	0.46	-2.0
1,920,966	-		GFF1897	0.46	-1.0
1,920,966	-		GFF1897	0.46	+0.1
1,920,973	+		GFF1897	0.48	-2.1
1,920,979	-		GFF1897	0.50	+0.1
1,920,984	+		GFF1897	0.52	+0.9
1,921,011	+		GFF1897	0.60	-1.3
1,921,056	-		GFF1897	0.74	-0.9
1,921,083	+		GFF1897	0.82	-0.6
1,921,083	+		GFF1897	0.82	-1.3
1,921,091	-		GFF1897	0.84	-0.2
1,921,129	+				-2.0
1,921,143	+				-1.2
1,921,160	-				-0.5
1,921,160	-				+0.9
1,921,160	-				-1.6
1,921,160	-				-0.1
1,921,195	+				-0.6
1,921,195	+				+0.4
1,921,203	-				-0.7
1,921,203	-				-0.2
1,921,203	-				-0.3
1,921,203	-				+1.7
1,921,203	-				-1.3
1,921,203	-				+0.8
1,921,206	+				+0.0
1,921,238	-				+0.7
1,921,250	+				-1.1
1,921,251	-				-0.3
1,921,269	-				+0.7
1,921,274	-				+0.1
1,921,280	+				+0.4
1,921,330	+				-0.8
1,921,330	+				-1.0
1,921,343	-				-0.6
1,921,343	-				-0.3
1,921,348	+				+1.5
1,921,361	-				-1.1
1,921,363	+				-0.6
1,921,365	+				-0.5
1,921,365	+				-0.7
1,921,365	+				-1.3
1,921,365	+				-1.8
1,921,365	+				+0.5
1,921,365	+				-0.0
1,921,373	-				-0.8
1,921,373	-				+0.4
1,921,373	-				+0.1
1,921,373	-				-0.1
1,921,373	-				+0.2
1,921,373	-				+1.0
1,921,373	-				+0.4
1,921,385	+				-0.1
1,921,388	-				+0.4
1,921,403	-				-0.3
1,921,408	+				+0.7
1,921,426	-				-0.5
1,921,432	+				+0.3
1,921,440	-				-0.3
1,921,440	-				+0.1
1,921,444	+				+0.3
1,921,444	+				+0.3
1,921,454	+				+0.0
1,921,457	-				+0.0
1,921,457	-				+0.3
1,921,462	-				-1.6
1,921,467	-				+0.3
1,921,477	+				-0.5
1,921,521	+				-0.2
1,921,573	+				-3.9
1,921,577	+				-0.0
1,921,585	-				-0.9
1,921,585	-				-0.2
1,921,585	-				-0.3
1,921,630	+				-1.5
1,921,630	+				-2.2
1,921,655	+		GFF1898	0.10	-0.8
1,921,660	+		GFF1898	0.10	-0.8
1,921,660	+		GFF1898	0.10	-1.7
1,921,660	+		GFF1898	0.10	-1.1
1,921,663	-		GFF1898	0.10	+0.5
1,921,697	+		GFF1898	0.12	+0.5
1,921,700	-		GFF1898	0.12	-0.7
1,921,734	-		GFF1898	0.13	+1.4
1,921,750	-		GFF1898	0.14	-1.3
1,921,761	+		GFF1898	0.15	-0.3
1,921,769	-		GFF1898	0.15	-0.6
1,921,777	+		GFF1898	0.15	+0.8
1,921,781	-		GFF1898	0.15	+0.3
1,921,785	-		GFF1898	0.16	+0.1
1,921,792	-		GFF1898	0.16	+0.8
1,921,818	+		GFF1898	0.17	-0.3
1,921,821	-		GFF1898	0.17	-0.5
1,921,826	-		GFF1898	0.17	-2.6
1,921,826	-		GFF1898	0.17	+0.5
1,921,827	-		GFF1898	0.17	+0.2
1,921,852	+		GFF1898	0.19	+0.9
1,921,856	+		GFF1898	0.19	-0.8
1,921,888	-		GFF1898	0.20	+0.3
1,921,925	+		GFF1898	0.22	+0.1
1,921,925	+		GFF1898	0.22	-2.0
1,921,925	+		GFF1898	0.22	+0.2
1,921,933	-		GFF1898	0.22	-0.8
1,921,933	-		GFF1898	0.22	+0.4
1,921,933	-		GFF1898	0.22	-0.4
1,921,933	-		GFF1898	0.22	-2.1
1,921,938	-		GFF1898	0.22	+0.5
1,921,944	-		GFF1898	0.22	-0.1
1,922,019	+		GFF1898	0.26	+1.4
1,922,024	-		GFF1898	0.26	+0.6
1,922,051	-		GFF1898	0.27	-0.3
1,922,069	+		GFF1898	0.28	-1.0
1,922,071	+		GFF1898	0.28	+0.7
1,922,074	+		GFF1898	0.28	-0.2
1,922,077	-		GFF1898	0.28	+0.1
1,922,077	-		GFF1898	0.28	+0.2
1,922,077	-		GFF1898	0.28	-0.5
1,922,081	+		GFF1898	0.28	-0.5
1,922,081	+		GFF1898	0.28	-0.6
1,922,081	+		GFF1898	0.28	+0.3
1,922,081	+		GFF1898	0.28	+1.1
1,922,081	+		GFF1898	0.28	-2.5
1,922,082	-		GFF1898	0.28	-0.3
1,922,089	-		GFF1898	0.29	+0.5
1,922,089	-		GFF1898	0.29	+1.5
1,922,089	-		GFF1898	0.29	-0.5
1,922,089	-		GFF1898	0.29	-0.7
1,922,089	-		GFF1898	0.29	-2.6
1,922,089	-		GFF1898	0.29	+2.5
1,922,091	+		GFF1898	0.29	-1.2
1,922,094	-		GFF1898	0.29	-0.4
1,922,099	+		GFF1898	0.29	-0.8
1,922,099	-		GFF1898	0.29	-1.5
1,922,101	+		GFF1898	0.29	+0.2
1,922,101	+		GFF1898	0.29	+0.4
1,922,101	+		GFF1898	0.29	+0.0
1,922,101	+		GFF1898	0.29	+0.5
1,922,109	-		GFF1898	0.30	-2.0
1,922,109	-		GFF1898	0.30	-0.5
1,922,109	-		GFF1898	0.30	-1.4
1,922,109	-		GFF1898	0.30	+0.6
1,922,109	-		GFF1898	0.30	+0.4
1,922,117	-		GFF1898	0.30	-0.5
1,922,140	-		GFF1898	0.31	-2.4
1,922,190	+		GFF1898	0.33	-0.6
1,922,215	+		GFF1898	0.34	-1.6
1,922,256	+		GFF1898	0.36	-2.2
1,922,256	+		GFF1898	0.36	-0.4
1,922,283	+		GFF1898	0.37	-0.1
1,922,295	-		GFF1898	0.37	-2.4
1,922,303	+		GFF1898	0.38	-1.1
1,922,359	+		GFF1898	0.40	-0.1
1,922,361	+		GFF1898	0.40	-2.1
1,922,367	-		GFF1898	0.41	-0.6
1,922,367	-		GFF1898	0.41	-2.6
1,922,372	+		GFF1898	0.41	+0.8
1,922,372	+		GFF1898	0.41	-0.1
1,922,372	+		GFF1898	0.41	-0.4
1,922,377	+		GFF1898	0.41	+0.4
1,922,377	+		GFF1898	0.41	-0.9
1,922,377	+		GFF1898	0.41	+0.8
1,922,377	+		GFF1898	0.41	-1.3
1,922,377	+		GFF1898	0.41	-1.3
1,922,377	+		GFF1898	0.41	+1.0
1,922,377	+		GFF1898	0.41	-0.4
1,922,377	+		GFF1898	0.41	-1.0
1,922,377	+		GFF1898	0.41	-1.3
1,922,382	+		GFF1898	0.41	+0.5
1,922,382	+		GFF1898	0.41	+0.1
1,922,385	-		GFF1898	0.41	+0.6
1,922,385	-		GFF1898	0.41	-1.2
1,922,385	-		GFF1898	0.41	-0.6
1,922,385	-		GFF1898	0.41	-0.7
1,922,385	-		GFF1898	0.41	-0.1
1,922,385	-		GFF1898	0.41	-1.8
1,922,385	-		GFF1898	0.41	-0.9
1,922,385	-		GFF1898	0.41	+1.3
1,922,393	+		GFF1898	0.42	+0.5
1,922,401	-		GFF1898	0.42	-2.3
1,922,416	+		GFF1898	0.43	+0.3
1,922,416	+		GFF1898	0.43	+0.8
1,922,421	+		GFF1898	0.43	-0.7
1,922,504	-		GFF1898	0.46	-2.2
1,922,517	-		GFF1898	0.47	+0.4
1,922,519	+		GFF1898	0.47	-2.1
1,922,577	-		GFF1898	0.50	-1.5
1,922,581	+		GFF1898	0.50	-0.5
1,922,581	+		GFF1898	0.50	+0.2
1,922,583	+		GFF1898	0.50	-1.9
1,922,589	-		GFF1898	0.50	-0.6
1,922,589	-		GFF1898	0.50	-0.4
1,922,591	-		GFF1898	0.50	-1.1
1,922,591	-		GFF1898	0.50	-0.2
1,922,591	-		GFF1898	0.50	+0.1
1,922,610	-		GFF1898	0.51	+0.6
1,922,642	-		GFF1898	0.52	+0.7
1,922,662	+		GFF1898	0.53	+0.0
1,922,672	+		GFF1898	0.54	+0.4
1,922,677	+		GFF1898	0.54	-1.8
1,922,709	-		GFF1898	0.55	-1.3
1,922,728	-		GFF1898	0.56	-0.5
1,922,739	-		GFF1898	0.57	+1.6
1,922,779	+		GFF1898	0.58	+0.1
1,922,779	+		GFF1898	0.58	-1.2
1,922,787	-		GFF1898	0.59	-0.6
1,922,787	-		GFF1898	0.59	+0.9
1,922,821	+		GFF1898	0.60	-0.5
1,922,841	+		GFF1898	0.61	-0.0
1,922,841	+		GFF1898	0.61	+1.8
1,922,847	-		GFF1898	0.61	-2.0
1,922,869	+		GFF1898	0.62	-1.0
1,922,874	+		GFF1898	0.62	-0.9
1,922,877	-		GFF1898	0.62	+0.2
1,922,914	+		GFF1898	0.64	-0.2
1,922,922	-		GFF1898	0.64	+0.9
1,922,922	-		GFF1898	0.64	+0.7
1,922,933	+		GFF1898	0.65	+1.3
1,922,943	-		GFF1898	0.65	+1.2
1,922,954	+		GFF1898	0.66	+0.1
1,922,954	+		GFF1898	0.66	-1.3
1,922,969	-		GFF1898	0.66	-0.5
1,923,001	+		GFF1898	0.68	-1.3
1,923,014	+		GFF1898	0.68	+0.8
1,923,014	+		GFF1898	0.68	+0.8
1,923,014	+		GFF1898	0.68	-0.8
1,923,014	+		GFF1898	0.68	-0.6
1,923,014	+		GFF1898	0.68	-1.1
1,923,014	+		GFF1898	0.68	-1.3
1,923,014	+		GFF1898	0.68	-1.0
1,923,019	+		GFF1898	0.69	-0.2
1,923,022	-		GFF1898	0.69	+1.5
1,923,022	-		GFF1898	0.69	-3.4
1,923,022	-		GFF1898	0.69	+0.7
1,923,022	-		GFF1898	0.69	-1.0
1,923,022	-		GFF1898	0.69	+0.0
1,923,022	-		GFF1898	0.69	-1.4
1,923,082	-		GFF1898	0.71	-1.7
1,923,107	-		GFF1898	0.72	-0.7
1,923,117	-		GFF1898	0.73	-0.2
1,923,126	-		GFF1898	0.73	-1.3
1,923,145	+		GFF1898	0.74	-0.0
1,923,147	+		GFF1898	0.74	+0.7
1,923,147	+		GFF1898	0.74	-0.3
1,923,156	-		GFF1898	0.74	-1.3
1,923,192	-		GFF1898	0.76	-0.1
1,923,192	-		GFF1898	0.76	-2.2
1,923,211	+		GFF1898	0.77	-2.3
1,923,211	+		GFF1898	0.77	-0.1
1,923,227	+		GFF1898	0.77	-0.2
1,923,237	+		GFF1898	0.78	+0.8
1,923,241	-		GFF1898	0.78	+0.5
1,923,247	+		GFF1898	0.78	-0.9
1,923,252	+		GFF1898	0.78	+0.1
1,923,255	-		GFF1898	0.79	-1.6
1,923,262	-		GFF1898	0.79	+0.6
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1,923,326	-		GFF1898	0.82	+1.9
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1,923,390	-		GFF1898	0.84	-0.5
1,923,393	+		GFF1898	0.85	-1.2
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1,923,399	+		GFF1898	0.85	+0.5
1,923,401	+		GFF1898	0.85	-1.1
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1,923,505	+		GFF1898	0.89	+0.1
1,923,559	+				-1.9
1,923,559	+				-0.5
1,923,559	+				-0.5
1,923,567	-				-2.3
1,923,569	+				-0.2
1,923,570	+				+0.9
1,923,573	+				+0.0
1,923,577	-				-0.5
1,923,577	-				-1.1
1,923,577	-				+0.1
1,923,578	-				-1.3
1,923,581	-				-0.6
1,923,581	-				+0.9
1,923,589	+				+0.8
1,923,597	-				-2.3
1,923,622	-				-1.7
1,923,633	+				-0.6
1,923,702	-				+0.7
1,923,725	+				-0.6
1,923,760	+				+0.1
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1,923,778	-				-0.0
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1,923,915	+		GFF1899	0.33	-0.9
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1,923,946	+		GFF1899	0.39	-2.8
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1,924,002	+		GFF1899	0.51	-0.3
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1,924,005	-		GFF1899	0.51	-0.6
1,924,007	+		GFF1899	0.52	-2.7
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1,924,014	-		GFF1899	0.53	-1.5
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1,924,208	+				-0.8
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1,924,213	+				+0.5
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1,924,348	+				-1.6
1,924,359	+				+0.2
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1,924,449	-		GFF1900	0.16	-0.1
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1,924,458	+		GFF1900	0.17	+0.4
1,924,459	-		GFF1900	0.17	-0.1
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1,924,463	+		GFF1900	0.18	-0.8
1,924,463	+		GFF1900	0.18	-1.3
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1,924,473	+		GFF1900	0.19	-1.3
1,924,483	+		GFF1900	0.20	-0.8
1,924,484	+		GFF1900	0.20	+0.0
1,924,491	-		GFF1900	0.20	-1.5
1,924,492	-		GFF1900	0.20	+0.1
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1,924,559	-		GFF1900	0.27	-0.3
1,924,572	-		GFF1900	0.28	-1.6
1,924,572	-		GFF1900	0.28	-0.4
1,924,574	+		GFF1900	0.28	+0.4
1,924,658	+		GFF1900	0.36	-1.7
1,924,669	+		GFF1900	0.37	-0.5
1,924,686	+		GFF1900	0.39	-0.1
1,924,691	+		GFF1900	0.39	-1.3
1,924,712	+		GFF1900	0.41	-1.0
1,924,712	+		GFF1900	0.41	+0.6
1,924,712	+		GFF1900	0.41	+0.2
1,924,712	+		GFF1900	0.41	-0.9
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1,924,720	-		GFF1900	0.42	-0.5
1,924,720	-		GFF1900	0.42	+0.9
1,924,720	-		GFF1900	0.42	-1.4
1,924,720	-		GFF1900	0.42	-1.7
1,924,720	-		GFF1900	0.42	-0.3
1,924,730	-		GFF1900	0.43	-0.2
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1,924,752	-		GFF1900	0.45	+0.3