Strain Fitness in Sphingobium sp. HT1-2 around GFF1838

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
1,858,164	+		GFF1837	0.19	-1.9
1,858,171	-		GFF1837	0.20	-1.3
1,858,199	+		GFF1837	0.22	+0.4
1,858,206	-		GFF1837	0.23	+1.0
1,858,216	+		GFF1837	0.23	+0.9
1,858,216	+		GFF1837	0.23	-0.9
1,858,216	+		GFF1837	0.23	+1.1
1,858,216	+		GFF1837	0.23	+0.5
1,858,224	-		GFF1837	0.24	+0.0
1,858,224	-		GFF1837	0.24	-0.5
1,858,244	+		GFF1837	0.26	+1.0
1,858,248	+		GFF1837	0.26	-0.9
1,858,250	+		GFF1837	0.26	-2.0
1,858,251	-		GFF1837	0.26	+0.4
1,858,255	+		GFF1837	0.27	+1.0
1,858,269	+		GFF1837	0.28	+0.1
1,858,304	+		GFF1837	0.31	-0.1
1,858,314	-		GFF1837	0.32	-1.2
1,858,319	-		GFF1837	0.32	-1.0
1,858,335	+		GFF1837	0.34	-0.2
1,858,339	-		GFF1837	0.34	-1.0
1,858,354	+		GFF1837	0.35	+1.3
1,858,359	+		GFF1837	0.36	-0.1
1,858,362	-		GFF1837	0.36	-0.9
1,858,362	-		GFF1837	0.36	+0.4
1,858,367	+		GFF1837	0.36	+1.5
1,858,372	-		GFF1837	0.37	-1.3
1,858,375	-		GFF1837	0.37	-0.2
1,858,388	-		GFF1837	0.38	-0.7
1,858,410	+		GFF1837	0.40	+0.3
1,858,418	-		GFF1837	0.41	-0.8
1,858,425	+		GFF1837	0.41	-1.1
1,858,425	+		GFF1837	0.41	-1.5
1,858,425	+		GFF1837	0.41	-1.1
1,858,431	+		GFF1837	0.42	-0.3
1,858,433	-		GFF1837	0.42	+0.1
1,858,433	-		GFF1837	0.42	-0.9
1,858,439	-		GFF1837	0.43	-1.0
1,858,456	+		GFF1837	0.44	+0.8
1,858,473	-		GFF1837	0.46	-0.3
1,858,476	+		GFF1837	0.46	-1.7
1,858,482	+		GFF1837	0.46	-0.1
1,858,484	-		GFF1837	0.46	-0.9
1,858,490	-		GFF1837	0.47	-1.4
1,858,490	-		GFF1837	0.47	-0.0
1,858,497	+		GFF1837	0.48	+0.6
1,858,502	+		GFF1837	0.48	-0.9
1,858,505	-		GFF1837	0.48	-1.7
1,858,524	+		GFF1837	0.50	+0.1
1,858,532	-		GFF1837	0.51	+0.5
1,858,532	-		GFF1837	0.51	+0.3
1,858,532	-		GFF1837	0.51	-1.1
1,858,540	+		GFF1837	0.51	-0.2
1,858,551	+		GFF1837	0.52	-1.7
1,858,559	-		GFF1837	0.53	+0.5
1,858,564	+		GFF1837	0.53	+0.9
1,858,569	+		GFF1837	0.54	-0.2
1,858,569	+		GFF1837	0.54	-1.7
1,858,576	-		GFF1837	0.54	-0.1
1,858,577	-		GFF1837	0.54	-0.2
1,858,577	-		GFF1837	0.54	-0.0
1,858,577	-		GFF1837	0.54	+0.1
1,858,577	-		GFF1837	0.54	-0.3
1,858,577	-		GFF1837	0.54	+0.8
1,858,577	-		GFF1837	0.54	+0.4
1,858,584	+		GFF1837	0.55	-0.1
1,858,591	+		GFF1837	0.56	+0.7
1,858,599	-		GFF1837	0.56	+0.8
1,858,616	+		GFF1837	0.58	+0.4
1,858,618	+		GFF1837	0.58	+0.2
1,858,624	-		GFF1837	0.59	-0.6
1,858,624	-		GFF1837	0.59	+1.4
1,858,631	+		GFF1837	0.59	+0.1
1,858,644	-		GFF1837	0.60	-1.3
1,858,644	-		GFF1837	0.60	-0.8
1,858,644	-		GFF1837	0.60	-0.7
1,858,645	-		GFF1837	0.60	-0.9
1,858,650	-		GFF1837	0.61	-0.3
1,858,690	+		GFF1837	0.64	-0.5
1,858,697	+		GFF1837	0.65	-0.7
1,858,698	-		GFF1837	0.65	-2.0
1,858,698	-		GFF1837	0.65	-2.6
1,858,698	-		GFF1837	0.65	-0.2
1,858,736	+		GFF1837	0.68	+0.1
1,858,740	+		GFF1837	0.68	+0.3
1,858,748	-		GFF1837	0.69	+0.7
1,858,748	-		GFF1837	0.69	+1.5
1,858,748	-		GFF1837	0.69	-0.3
1,858,748	-		GFF1837	0.69	+0.4
1,858,764	+		GFF1837	0.71	+0.5
1,858,799	+		GFF1837	0.74	-0.4
1,858,805	-		GFF1837	0.74	-1.2
1,858,807	-		GFF1837	0.74	+0.6
1,858,807	-		GFF1837	0.74	-0.6
1,858,807	-		GFF1837	0.74	-0.4
1,858,824	-		GFF1837	0.76	-1.3
1,858,824	-		GFF1837	0.76	-0.5
1,858,824	-		GFF1837	0.76	+0.1
1,858,870	-		GFF1837	0.80	+0.9
1,858,885	+		GFF1837	0.81	+0.5
1,858,885	+		GFF1837	0.81	+0.7
1,858,903	-		GFF1837	0.82	-0.5
1,858,919	-		GFF1837	0.84	+0.0
1,858,934	+		GFF1837	0.85	+0.7
1,858,935	-		GFF1837	0.85	-0.9
1,858,935	-		GFF1837	0.85	+0.1
1,858,937	+		GFF1837	0.85	-0.1
1,858,944	+		GFF1837	0.86	-0.3
1,858,944	+		GFF1837	0.86	-1.2
1,858,944	+		GFF1837	0.86	-1.8
1,858,944	+		GFF1837	0.86	-1.9
1,858,952	-		GFF1837	0.87	-0.8
1,858,952	-		GFF1837	0.87	-1.3
1,858,952	-		GFF1837	0.87	-0.1
1,858,952	-		GFF1837	0.87	+0.9
1,858,952	-		GFF1837	0.87	+0.5
1,858,952	-		GFF1837	0.87	-2.1
1,858,952	-		GFF1837	0.87	+0.4
1,858,952	-		GFF1837	0.87	+0.2
1,858,964	+		GFF1837	0.88	-1.4
1,858,964	+		GFF1837	0.88	-0.9
1,858,967	+		GFF1837	0.88	-0.7
1,858,969	+		GFF1837	0.88	+1.7
1,858,975	-		GFF1837	0.89	-0.7
1,858,977	+		GFF1837	0.89	-1.9
1,858,997	-				+0.3
1,858,998	+				+0.1
1,859,004	+				+0.5
1,859,012	-				-0.4
1,859,012	-				-0.3
1,859,023	+				+0.8
1,859,031	-				-0.5
1,859,093	+				-1.5
1,859,093	+				-1.5
1,859,101	-				-2.7
1,859,101	-				-0.3
1,859,108	+				-2.5
1,859,148	+				-1.5
1,859,158	+				+0.0
1,859,166	-				+0.8
1,859,166	-				+0.9
1,859,166	-				-1.0
1,859,166	-				-1.5
1,859,177	+				+1.1
1,859,185	-				-2.4
1,859,186	-				-0.6
1,859,196	+				-0.3
1,859,219	+				-0.6
1,859,232	-		GFF1838	0.11	+1.0
1,859,232	-		GFF1838	0.11	-0.5
1,859,255	-		GFF1838	0.13	+0.9
1,859,325	+		GFF1838	0.20	+0.1
1,859,342	+		GFF1838	0.21	+0.0
1,859,352	+		GFF1838	0.22	+0.5
1,859,397	+		GFF1838	0.27	-0.9
1,859,416	-		GFF1838	0.29	+0.6
1,859,421	-		GFF1838	0.29	+0.7
1,859,451	+		GFF1838	0.32	-1.5
1,859,451	-		GFF1838	0.32	-1.1
1,859,459	-		GFF1838	0.33	-0.9
1,859,508	-		GFF1838	0.37	+0.2
1,859,517	+		GFF1838	0.38	+0.5
1,859,517	+		GFF1838	0.38	+0.8
1,859,517	+		GFF1838	0.38	+0.4
1,859,517	+		GFF1838	0.38	-0.3
1,859,517	+		GFF1838	0.38	-1.7
1,859,517	+		GFF1838	0.38	+0.6
1,859,517	+		GFF1838	0.38	+0.5
1,859,517	+		GFF1838	0.38	-1.6
1,859,517	+		GFF1838	0.38	-0.3
1,859,517	+		GFF1838	0.38	-0.2
1,859,517	+		GFF1838	0.38	-0.0
1,859,519	+		GFF1838	0.39	-1.7
1,859,522	+		GFF1838	0.39	+0.0
1,859,525	-		GFF1838	0.39	-0.9
1,859,525	-		GFF1838	0.39	+0.4
1,859,525	-		GFF1838	0.39	+0.6
1,859,525	-		GFF1838	0.39	-2.5
1,859,525	-		GFF1838	0.39	+0.3
1,859,563	+		GFF1838	0.43	+0.3
1,859,572	+		GFF1838	0.44	+0.3
1,859,575	-		GFF1838	0.44	+0.2
1,859,603	-		GFF1838	0.47	+0.6
1,859,635	-		GFF1838	0.50	+0.1
1,859,653	-		GFF1838	0.51	-1.0
1,859,717	-		GFF1838	0.58	-0.6
1,859,718	+		GFF1838	0.58	-1.4
1,859,718	+		GFF1838	0.58	+1.0
1,859,722	-		GFF1838	0.58	-1.3
1,859,752	+		GFF1838	0.61	-0.7
1,859,760	-		GFF1838	0.62	-0.1
1,859,761	+		GFF1838	0.62	-0.2
1,859,761	+		GFF1838	0.62	+0.5
1,859,769	-		GFF1838	0.63	-0.6
1,859,785	+		GFF1838	0.64	+1.5
1,859,793	-		GFF1838	0.65	+0.2
1,859,799	+		GFF1838	0.66	-0.8
1,859,815	-		GFF1838	0.67	+0.6
1,859,851	+		GFF1838	0.71	-1.8
1,859,854	+		GFF1838	0.71	+0.2
1,859,863	+		GFF1838	0.72	-1.0
1,859,863	+		GFF1838	0.72	+0.1
1,859,863	-		GFF1838	0.72	+0.2
1,859,864	-		GFF1838	0.72	-1.1
1,859,869	+		GFF1838	0.72	+1.0
1,859,872	-		GFF1838	0.73	+0.3
1,859,887	+		GFF1838	0.74	+0.2
1,859,901	-		GFF1838	0.75	+0.0
1,859,906	-		GFF1838	0.76	-0.7
1,859,914	-		GFF1838	0.77	+0.8
1,859,922	-		GFF1838	0.77	+0.1
1,859,924	+		GFF1838	0.78	-1.8
1,859,935	-		GFF1838	0.79	-1.2
1,859,939	+		GFF1838	0.79	+0.3
1,859,947	-		GFF1838	0.80	-0.4
1,859,950	+		GFF1838	0.80	+0.3
1,859,958	-		GFF1838	0.81	-0.6
1,859,980	-		GFF1838	0.83	+0.1
1,859,980	-		GFF1838	0.83	+0.2
1,859,982	+		GFF1838	0.83	+0.5
1,859,982	-		GFF1838	0.83	-1.4
1,859,982	-		GFF1838	0.83	-0.5
1,859,990	-		GFF1838	0.84	-2.3
1,859,990	-		GFF1838	0.84	+1.4
1,859,990	-		GFF1838	0.84	-0.5
1,859,990	-		GFF1838	0.84	-0.0
1,859,990	-		GFF1838	0.84	+0.1
1,859,992	+		GFF1838	0.84	+1.7
1,859,992	-		GFF1838	0.84	+0.1
1,859,994	-		GFF1838	0.84	-0.1
1,860,000	-		GFF1838	0.85	-0.3
1,860,000	-		GFF1838	0.85	-0.1
1,860,000	-		GFF1838	0.85	+0.3
1,860,000	-		GFF1838	0.85	-1.6
1,860,000	-		GFF1838	0.85	-0.1
1,860,004	+		GFF1838	0.85	+0.5
1,860,010	+		GFF1838	0.86	+0.5
1,860,048	+		GFF1838	0.90	+0.3
1,860,048	+		GFF1838	0.90	-0.4
1,860,048	+		GFF1838	0.90	+0.9
1,860,068	+				-0.8
1,860,068	+				-1.8
1,860,073	+				+0.2
1,860,073	+				-2.3
1,860,073	+				-0.7
1,860,073	+				+0.5
1,860,081	-				-0.6
1,860,081	-				+0.5
1,860,117	-				-0.3
1,860,119	+				-0.1
1,860,124	+				+0.0
1,860,124	+				-0.0
1,860,124	+				-1.0
1,860,124	+				-0.9
1,860,124	+				+1.0
1,860,124	+				+0.3
1,860,127	-				+0.2
1,860,132	-				-0.4
1,860,132	-				+0.3
1,860,132	-				-0.8
1,860,132	-				-3.0
1,860,194	+				-1.3
1,860,202	-				-2.4
1,860,228	-				+0.1
1,860,285	+				-1.5
1,860,285	+				-0.6
1,860,310	-				-2.3
1,860,346	+		GFF1839	0.11	-2.0
1,860,346	+		GFF1839	0.11	-0.7
1,860,350	+		GFF1839	0.12	-0.2
1,860,354	-		GFF1839	0.12	-0.1
1,860,392	-		GFF1839	0.16	-1.8
1,860,394	+		GFF1839	0.16	+0.4
1,860,394	+		GFF1839	0.16	-1.0
1,860,402	-		GFF1839	0.17	-0.6
1,860,402	-		GFF1839	0.17	-1.5
1,860,402	-		GFF1839	0.17	-2.0
1,860,429	-		GFF1839	0.20	+0.3
1,860,429	-		GFF1839	0.20	+1.2
1,860,450	+		GFF1839	0.22	-1.3
1,860,450	+		GFF1839	0.22	-0.6
1,860,455	+		GFF1839	0.23	+1.2
1,860,458	-		GFF1839	0.23	+0.4
1,860,458	-		GFF1839	0.23	-1.8
1,860,458	-		GFF1839	0.23	+1.6
1,860,459	+		GFF1839	0.23	-0.1
1,860,462	-		GFF1839	0.24	-0.2
1,860,463	-		GFF1839	0.24	+0.5
1,860,467	-		GFF1839	0.24	-0.1
1,860,467	-		GFF1839	0.24	-0.7
1,860,467	-		GFF1839	0.24	+0.9
1,860,484	+		GFF1839	0.26	-1.2
1,860,497	-		GFF1839	0.27	-1.4
1,860,498	-		GFF1839	0.28	-1.3
1,860,498	-		GFF1839	0.28	-2.9
1,860,498	-		GFF1839	0.28	+0.3
1,860,499	+		GFF1839	0.28	-1.8
1,860,499	+		GFF1839	0.28	-1.2
1,860,499	+		GFF1839	0.28	+1.0
1,860,502	-		GFF1839	0.28	-0.3
1,860,504	+		GFF1839	0.28	+0.8
1,860,504	+		GFF1839	0.28	+0.5
1,860,504	+		GFF1839	0.28	+0.4
1,860,504	+		GFF1839	0.28	+0.6
1,860,507	-		GFF1839	0.29	+1.3
1,860,507	-		GFF1839	0.29	-0.6
1,860,543	+		GFF1839	0.32	+0.3
1,860,556	-		GFF1839	0.34	-0.8
1,860,556	-		GFF1839	0.34	+1.1
1,860,556	-		GFF1839	0.34	+0.1
1,860,575	+		GFF1839	0.36	-0.3
1,860,575	+		GFF1839	0.36	+1.0
1,860,575	+		GFF1839	0.36	-0.1
1,860,575	+		GFF1839	0.36	+0.2
1,860,578	-		GFF1839	0.36	-1.0
1,860,583	-		GFF1839	0.37	+1.2
1,860,583	-		GFF1839	0.37	+0.6
1,860,583	-		GFF1839	0.37	-1.7
1,860,583	-		GFF1839	0.37	-1.1
1,860,583	-		GFF1839	0.37	+0.7
1,860,583	-		GFF1839	0.37	-2.1
1,860,583	-		GFF1839	0.37	+0.3
1,860,583	-		GFF1839	0.37	-1.3
1,860,583	-		GFF1839	0.37	-1.0
1,860,590	-		GFF1839	0.38	+0.7
1,860,601	+		GFF1839	0.39	-0.5
1,860,601	+		GFF1839	0.39	-0.2
1,860,609	-		GFF1839	0.40	+0.2
1,860,611	+		GFF1839	0.40	-0.7
1,860,619	-		GFF1839	0.41	-1.3
1,860,619	-		GFF1839	0.41	+0.3
1,860,623	+		GFF1839	0.41	-0.4
1,860,634	+		GFF1839	0.42	-0.3
1,860,634	+		GFF1839	0.42	+1.1
1,860,634	+		GFF1839	0.42	-1.7
1,860,634	+		GFF1839	0.42	-1.3
1,860,634	+		GFF1839	0.42	+0.2
1,860,634	+		GFF1839	0.42	-0.1
1,860,642	-		GFF1839	0.43	+0.0
1,860,642	-		GFF1839	0.43	+1.7
1,860,642	-		GFF1839	0.43	-0.1
1,860,642	-		GFF1839	0.43	+1.0
1,860,642	-		GFF1839	0.43	-1.8
1,860,656	+		GFF1839	0.45	+0.2
1,860,680	-		GFF1839	0.47	+0.5
1,860,707	+		GFF1839	0.50	+0.7
1,860,715	-		GFF1839	0.51	-0.6
1,860,727	+		GFF1839	0.52	+1.1
1,860,727	+		GFF1839	0.52	-0.3
1,860,727	+		GFF1839	0.52	+1.0
1,860,735	-		GFF1839	0.53	-1.8
1,860,735	-		GFF1839	0.53	+0.1
1,860,775	+		GFF1839	0.58	-1.2
1,860,775	+		GFF1839	0.58	+0.2
1,860,783	-		GFF1839	0.58	-0.5
1,860,783	-		GFF1839	0.58	-0.3
1,860,785	+		GFF1839	0.59	-0.6
1,860,785	+		GFF1839	0.59	-0.8
1,860,819	+		GFF1839	0.62	-0.6
1,860,820	+		GFF1839	0.62	-0.3
1,860,820	+		GFF1839	0.62	-1.5
1,860,820	+		GFF1839	0.62	+0.1
1,860,820	+		GFF1839	0.62	+0.9
1,860,827	-		GFF1839	0.63	-0.4
1,860,827	-		GFF1839	0.63	-0.5
1,860,855	+		GFF1839	0.66	-2.3
1,860,868	-		GFF1839	0.68	-0.7
1,860,986	+		GFF1839	0.80	-0.6
1,860,986	+		GFF1839	0.80	+0.2
1,860,986	+		GFF1839	0.80	+0.6
1,860,994	-		GFF1839	0.81	+0.1
1,860,998	+		GFF1839	0.82	-1.5
1,861,015	-		GFF1839	0.84	-0.1
1,861,018	+		GFF1839	0.84	+0.5
1,861,034	-		GFF1839	0.86	-0.4
1,861,038	+		GFF1839	0.86	-0.0
1,861,040	+		GFF1839	0.86	-0.6
1,861,048	-		GFF1839	0.87	-1.3
1,861,064	+		GFF1839	0.89	-1.0
1,861,064	+		GFF1839	0.89	-0.3
1,861,087	+				+0.2
1,861,087	+				+0.1
1,861,095	-				+0.9
1,861,095	-				+0.5
1,861,132	-				+0.0
1,861,145	-				-2.6