Strain Fitness in Sphingobium sp. HT1-2 around GFF1830

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
1,849,326	-		GFF1829	0.57	-2.4
1,849,337	+		GFF1829	0.57	+1.5
1,849,338	+		GFF1829	0.57	+1.0
1,849,338	+		GFF1829	0.57	+0.4
1,849,341	+		GFF1829	0.57	-1.2
1,849,402	+		GFF1829	0.61	-1.1
1,849,438	-		GFF1829	0.62	-1.5
1,849,472	-		GFF1829	0.64	-0.7
1,849,474	+		GFF1829	0.64	+0.1
1,849,474	+		GFF1829	0.64	-0.2
1,849,477	-		GFF1829	0.64	-1.0
1,849,482	-		GFF1829	0.65	-0.4
1,849,482	-		GFF1829	0.65	+1.2
1,849,490	+		GFF1829	0.65	-1.2
1,849,521	-		GFF1829	0.67	-0.1
1,849,539	+		GFF1829	0.68	-0.0
1,849,547	-		GFF1829	0.68	-0.7
1,849,550	+		GFF1829	0.68	+0.7
1,849,550	+		GFF1829	0.68	-0.3
1,849,597	-		GFF1829	0.71	-1.4
1,849,621	-		GFF1829	0.72	-1.7
1,849,633	+		GFF1829	0.73	-1.5
1,849,639	+		GFF1829	0.73	+0.4
1,849,639	+		GFF1829	0.73	-0.4
1,849,639	+		GFF1829	0.73	-0.0
1,849,639	+		GFF1829	0.73	-0.8
1,849,639	+		GFF1829	0.73	+0.5
1,849,639	+		GFF1829	0.73	-0.4
1,849,639	+		GFF1829	0.73	-0.8
1,849,639	+		GFF1829	0.73	+1.0
1,849,644	+		GFF1829	0.73	-1.2
1,849,644	+		GFF1829	0.73	-0.0
1,849,647	-		GFF1829	0.73	-2.3
1,849,647	-		GFF1829	0.73	-2.1
1,849,647	-		GFF1829	0.73	+0.9
1,849,647	-		GFF1829	0.73	+1.0
1,849,649	+		GFF1829	0.73	-0.3
1,849,662	-		GFF1829	0.74	-1.4
1,849,664	-		GFF1829	0.74	-0.8
1,849,686	+		GFF1829	0.75	-1.7
1,849,686	+		GFF1829	0.75	-0.6
1,849,686	+		GFF1829	0.75	+0.0
1,849,694	-		GFF1829	0.76	+1.1
1,849,694	-		GFF1829	0.76	+0.9
1,849,743	-		GFF1829	0.78	-1.5
1,849,756	-		GFF1829	0.79	-0.3
1,849,792	+		GFF1829	0.81	-0.1
1,849,792	+		GFF1829	0.81	+1.4
1,849,792	+		GFF1829	0.81	-2.7
1,849,792	+		GFF1829	0.81	+0.9
1,849,792	+		GFF1829	0.81	+0.5
1,849,792	+		GFF1829	0.81	-2.4
1,849,792	+		GFF1829	0.81	+0.0
1,849,792	+		GFF1829	0.81	-0.1
1,849,792	+		GFF1829	0.81	-1.6
1,849,792	+		GFF1829	0.81	+0.4
1,849,792	+		GFF1829	0.81	+0.5
1,849,792	+		GFF1829	0.81	-1.1
1,849,792	+		GFF1829	0.81	+2.0
1,849,792	+		GFF1829	0.81	-0.2
1,849,800	-		GFF1829	0.81	-0.2
1,849,800	-		GFF1829	0.81	-0.5
1,849,800	-		GFF1829	0.81	+0.7
1,849,800	-		GFF1829	0.81	+1.5
1,849,800	-		GFF1829	0.81	-0.4
1,849,800	-		GFF1829	0.81	-1.3
1,849,800	-		GFF1829	0.81	-2.2
1,849,800	-		GFF1829	0.81	+0.6
1,849,800	-		GFF1829	0.81	+0.2
1,849,800	-		GFF1829	0.81	-0.6
1,849,800	-		GFF1829	0.81	-0.0
1,849,800	-		GFF1829	0.81	+0.2
1,849,800	-		GFF1829	0.81	+0.7
1,849,800	-		GFF1829	0.81	+0.8
1,849,800	-		GFF1829	0.81	-0.6
1,849,800	-		GFF1829	0.81	-1.7
1,849,800	-		GFF1829	0.81	+0.2
1,849,800	-		GFF1829	0.81	-2.5
1,849,825	+		GFF1829	0.83	-0.2
1,849,825	+		GFF1829	0.83	+0.2
1,849,833	-		GFF1829	0.83	-2.7
1,849,833	-		GFF1829	0.83	-1.5
1,849,847	-		GFF1829	0.84	+0.5
1,849,855	+		GFF1829	0.84	-0.2
1,849,863	-		GFF1829	0.84	+0.0
1,849,865	+		GFF1829	0.85	+0.8
1,849,865	+		GFF1829	0.85	-0.3
1,849,878	-		GFF1829	0.85	-1.1
1,849,880	+		GFF1829	0.85	+0.1
1,849,880	+		GFF1829	0.85	-0.9
1,849,880	+		GFF1829	0.85	-0.4
1,849,880	+		GFF1829	0.85	-0.9
1,849,880	+		GFF1829	0.85	-0.3
1,849,880	+		GFF1829	0.85	+0.1
1,849,880	+		GFF1829	0.85	-0.9
1,849,880	+		GFF1829	0.85	-0.5
1,849,880	+		GFF1829	0.85	-2.0
1,849,880	+		GFF1829	0.85	-1.1
1,849,880	+		GFF1829	0.85	+1.0
1,849,880	+		GFF1829	0.85	-1.8
1,849,880	+		GFF1829	0.85	+0.9
1,849,880	+		GFF1829	0.85	-0.8
1,849,880	+		GFF1829	0.85	-0.6
1,849,880	+		GFF1829	0.85	-0.4
1,849,880	+		GFF1829	0.85	-0.5
1,849,887	-		GFF1829	0.86	+1.2
1,849,888	-		GFF1829	0.86	-0.2
1,849,888	-		GFF1829	0.86	+0.3
1,849,888	-		GFF1829	0.86	+1.0
1,849,888	-		GFF1829	0.86	-1.3
1,849,888	-		GFF1829	0.86	+0.3
1,849,888	-		GFF1829	0.86	-0.3
1,849,888	-		GFF1829	0.86	-0.7
1,849,896	+		GFF1829	0.86	-2.5
1,849,902	+		GFF1829	0.87	+0.9
1,849,904	-		GFF1829	0.87	-0.8
1,849,906	+		GFF1829	0.87	-1.1
1,849,906	+		GFF1829	0.87	-0.2
1,849,923	+		GFF1829	0.88	+0.1
1,849,931	-		GFF1829	0.88	+0.0
1,849,931	-		GFF1829	0.88	+0.1
1,849,938	+		GFF1829	0.88	-2.3
1,849,938	+		GFF1829	0.88	-0.0
1,849,938	+		GFF1829	0.88	-0.3
1,849,938	+		GFF1829	0.88	-1.6
1,849,941	-		GFF1829	0.89	-2.1
1,849,946	-		GFF1829	0.89	+1.9
1,849,946	-		GFF1829	0.89	-0.1
1,849,946	-		GFF1829	0.89	-1.2
1,849,946	-		GFF1829	0.89	-0.2
1,849,954	+		GFF1829	0.89	-0.3
1,849,954	+		GFF1829	0.89	-0.3
1,849,956	-		GFF1829	0.89	+0.6
1,849,956	-		GFF1829	0.89	+0.0
1,849,962	-		GFF1829	0.90	-0.4
1,849,962	-		GFF1829	0.90	-0.5
1,849,962	-		GFF1829	0.90	-1.3
1,849,962	-		GFF1829	0.90	+0.1
1,850,000	-				+0.7
1,850,023	+				+0.2
1,850,031	-				-0.9
1,850,032	+				+0.4
1,850,037	+				-0.1
1,850,067	+				-1.6
1,850,067	+				+0.5
1,850,074	-				-0.5
1,850,074	-				-0.1
1,850,075	-				-0.4
1,850,075	-				+0.5
1,850,114	+				-0.9
1,850,114	+				-0.6
1,850,114	+				-0.3
1,850,114	+				-0.4
1,850,121	-				-3.6
1,850,121	-				+0.2
1,850,121	-				+2.1
1,850,122	+				-0.6
1,850,122	-				+0.4
1,850,122	-				-0.5
1,850,122	-				-1.1
1,850,122	-				+0.1
1,850,132	+				-0.3
1,850,145	-				+0.2
1,850,176	-				+0.6
1,850,283	+				+0.9
1,850,300	-				-0.5
1,850,330	+				-1.5
1,850,332	+				-0.5
1,850,338	-				-0.9
1,850,340	-				-0.3
1,850,408	+		GFF1830	0.12	-1.7
1,850,408	+		GFF1830	0.12	-0.7
1,850,408	+		GFF1830	0.12	-2.0
1,850,412	+		GFF1830	0.13	+0.4
1,850,416	-		GFF1830	0.13	-0.3
1,850,444	+		GFF1830	0.16	-0.8
1,850,474	-		GFF1830	0.20	-0.5
1,850,475	+		GFF1830	0.20	-0.6
1,850,481	+		GFF1830	0.21	+0.6
1,850,481	+		GFF1830	0.21	-0.1
1,850,481	+		GFF1830	0.21	-0.8
1,850,489	-		GFF1830	0.22	-0.4
1,850,496	+		GFF1830	0.22	-0.5
1,850,499	-		GFF1830	0.23	-0.3
1,850,537	-		GFF1830	0.27	-1.5
1,850,540	+		GFF1830	0.27	+0.4
1,850,569	-		GFF1830	0.31	-1.9
1,850,569	-		GFF1830	0.31	+0.1
1,850,575	-		GFF1830	0.31	-0.3
1,850,575	-		GFF1830	0.31	-0.4
1,850,604	+		GFF1830	0.34	+0.5
1,850,607	-		GFF1830	0.35	-0.1
1,850,612	-		GFF1830	0.35	-0.5
1,850,619	+		GFF1830	0.36	+0.2
1,850,627	-		GFF1830	0.37	-0.6
1,850,627	-		GFF1830	0.37	-0.1
1,850,629	+		GFF1830	0.37	-1.1
1,850,639	+		GFF1830	0.38	-1.6
1,850,651	-		GFF1830	0.40	-0.6
1,850,665	+		GFF1830	0.41	-2.6
1,850,693	-		GFF1830	0.44	-0.4
1,850,694	+		GFF1830	0.45	+0.3
1,850,694	+		GFF1830	0.45	-2.1
1,850,694	+		GFF1830	0.45	+1.1
1,850,702	-		GFF1830	0.45	-0.8
1,850,702	-		GFF1830	0.45	+0.7
1,850,725	+		GFF1830	0.48	+1.2
1,850,725	+		GFF1830	0.48	-0.1
1,850,747	+		GFF1830	0.51	-0.6
1,850,768	+		GFF1830	0.53	+0.7
1,850,773	+		GFF1830	0.53	-0.5
1,850,774	-		GFF1830	0.54	-0.6
1,850,774	-		GFF1830	0.54	-1.3
1,850,776	+		GFF1830	0.54	-0.1
1,850,781	+		GFF1830	0.54	+1.1
1,850,781	+		GFF1830	0.54	+0.2
1,850,784	-		GFF1830	0.55	-0.9
1,850,784	-		GFF1830	0.55	-0.7
1,850,784	-		GFF1830	0.55	-0.4
1,850,789	-		GFF1830	0.55	+0.3
1,850,794	-		GFF1830	0.56	+0.7
1,850,842	+		GFF1830	0.61	-1.0
1,850,859	-		GFF1830	0.63	+1.2
1,850,862	+		GFF1830	0.63	-2.1
1,850,862	+		GFF1830	0.63	-0.4
1,850,862	+		GFF1830	0.63	+0.9
1,850,862	+		GFF1830	0.63	+0.3
1,850,862	+		GFF1830	0.63	+0.6
1,850,864	-		GFF1830	0.64	-2.1
1,850,864	-		GFF1830	0.64	+0.5
1,850,870	-		GFF1830	0.64	-0.8
1,850,870	-		GFF1830	0.64	-0.0
1,850,956	-		GFF1830	0.74	-0.3
1,850,966	+		GFF1830	0.75	+1.0
1,850,998	+		GFF1830	0.79	-0.4
1,851,001	+		GFF1830	0.79	-0.4
1,851,001	+		GFF1830	0.79	-0.2
1,851,004	-		GFF1830	0.79	+0.2
1,851,006	+		GFF1830	0.80	-1.3
1,851,009	-		GFF1830	0.80	-0.5
1,851,030	+		GFF1830	0.82	+0.7
1,851,030	+		GFF1830	0.82	+0.1
1,851,030	+		GFF1830	0.82	-1.4
1,851,038	+		GFF1830	0.83	+0.5
1,851,038	-		GFF1830	0.83	+0.1
1,851,038	-		GFF1830	0.83	-1.0
1,851,051	+		GFF1830	0.85	+0.5
1,851,056	+		GFF1830	0.85	+1.0
1,851,059	-		GFF1830	0.86	+0.7
1,851,061	+		GFF1830	0.86	+0.7
1,851,061	+		GFF1830	0.86	-0.5
1,851,061	+		GFF1830	0.86	+1.0
1,851,069	-		GFF1830	0.87	-1.2
1,851,075	-		GFF1830	0.87	+1.0
1,851,075	-		GFF1830	0.87	+0.3
1,851,114	-				+0.7
1,851,114	-				+0.0
1,851,124	+				-0.2
1,851,131	+				-0.8
1,851,134	-				+0.7
1,851,170	-				-1.2
1,851,175	-				-0.2
1,851,206	-				+0.2
1,851,221	-				+0.1
1,851,231	+		GFF1831	0.10	+0.0
1,851,263	+		GFF1831	0.17	-1.6
1,851,312	+		GFF1831	0.29	+0.5
1,851,323	-		GFF1831	0.31	+1.6
1,851,342	-		GFF1831	0.36	-0.7
1,851,354	+		GFF1831	0.39	-0.1
1,851,361	+		GFF1831	0.40	+0.7
1,851,369	-		GFF1831	0.42	+0.2
1,851,369	-		GFF1831	0.42	-1.9
1,851,369	-		GFF1831	0.42	+1.0
1,851,384	+		GFF1831	0.46	+0.6
1,851,394	+		GFF1831	0.48	-0.9
1,851,394	+		GFF1831	0.48	-0.6
1,851,399	+		GFF1831	0.49	-1.2
1,851,402	-		GFF1831	0.50	+0.8
1,851,402	-		GFF1831	0.50	-0.9
1,851,405	+		GFF1831	0.51	-2.2
1,851,405	+		GFF1831	0.51	-1.7
1,851,407	-		GFF1831	0.51	-0.6
1,851,407	-		GFF1831	0.51	-0.3
1,851,413	-		GFF1831	0.52	-0.3
1,851,413	-		GFF1831	0.52	+0.3
1,851,428	+		GFF1831	0.56	+0.0
1,851,430	-		GFF1831	0.56	+1.2
1,851,433	+		GFF1831	0.57	+0.3
1,851,436	-		GFF1831	0.58	-0.8
1,851,436	-		GFF1831	0.58	-1.3
1,851,438	+		GFF1831	0.58	+0.1
1,851,445	+		GFF1831	0.60	-1.3
1,851,456	+		GFF1831	0.62	+0.0
1,851,456	+		GFF1831	0.62	-0.1
1,851,456	+		GFF1831	0.62	-0.5
1,851,456	+		GFF1831	0.62	-2.1
1,851,464	-		GFF1831	0.64	+0.2
1,851,464	-		GFF1831	0.64	-0.3
1,851,464	-		GFF1831	0.64	+0.3
1,851,464	-		GFF1831	0.64	-0.4
1,851,498	-		GFF1831	0.72	+0.9
1,851,512	-		GFF1831	0.76	-0.8
1,851,517	-		GFF1831	0.77	-0.3
1,851,520	+		GFF1831	0.77	-0.1
1,851,523	-		GFF1831	0.78	+0.9
1,851,528	-		GFF1831	0.79	+0.9
1,851,538	-		GFF1831	0.82	-0.3
1,851,548	+		GFF1831	0.84	-0.3
1,851,575	-				-0.8
1,851,589	-				-1.1
1,851,589	-				+0.4
1,851,599	+				-0.9
1,851,607	-				-0.3
1,851,628	+				-0.6
1,851,628	+				-0.7
1,851,628	+				-0.2
1,851,628	+				-1.3
1,851,628	+				-0.4
1,851,628	+				-1.4
1,851,628	+				-0.8
1,851,628	+				-1.6
1,851,636	+				-0.7
1,851,636	-				-0.5
1,851,636	-				+0.2
1,851,636	-				-0.1
1,851,636	-				+0.4
1,851,636	-				-0.8
1,851,636	-				-1.9
1,851,636	-				+1.8
1,851,636	-				-1.5
1,851,641	+				+1.5
1,851,644	-				-2.2
1,851,646	+				+1.0
1,851,647	+				+0.6
1,851,671	+				+1.3
1,851,690	+				+0.1
1,851,693	-				+0.5
1,851,722	+				+0.1
1,851,722	+				+0.9
1,851,732	+				+0.8
1,851,732	+				-0.5
1,851,735	-				-1.3
1,851,740	-				+0.9
1,851,760	-		GFF1832	0.11	-0.8
1,851,761	+		GFF1832	0.11	+0.0
1,851,776	+		GFF1832	0.12	-2.5
1,851,784	-		GFF1832	0.13	-1.8
1,851,784	-		GFF1832	0.13	-0.4
1,851,812	+		GFF1832	0.15	-0.6
1,851,820	+		GFF1832	0.15	+0.1
1,851,820	-		GFF1832	0.15	+0.2
1,851,828	-		GFF1832	0.16	-1.2
1,851,828	-		GFF1832	0.16	-0.9
1,851,860	+		GFF1832	0.18	+0.8
1,851,860	+		GFF1832	0.18	-0.3
1,851,869	-		GFF1832	0.19	+0.1
1,851,871	+		GFF1832	0.19	+0.9
1,851,871	+		GFF1832	0.19	-1.1
1,851,871	+		GFF1832	0.19	+0.2
1,851,879	-		GFF1832	0.20	-0.5
1,851,879	-		GFF1832	0.20	+0.2
1,851,879	-		GFF1832	0.20	-0.8
1,851,879	-		GFF1832	0.20	-2.3
1,851,879	-		GFF1832	0.20	+0.5
1,851,879	-		GFF1832	0.20	-0.6
1,851,903	-		GFF1832	0.21	-0.7
1,851,903	-		GFF1832	0.21	+0.0
1,851,903	-		GFF1832	0.21	-0.5
1,851,914	+		GFF1832	0.22	+0.7
1,851,914	+		GFF1832	0.22	+0.8
1,851,919	+		GFF1832	0.23	-0.4
1,851,919	+		GFF1832	0.23	-0.2
1,851,919	+		GFF1832	0.23	-0.1
1,851,927	-		GFF1832	0.23	-2.7
1,851,927	-		GFF1832	0.23	-0.3
1,851,927	-		GFF1832	0.23	-0.3
1,851,944	+		GFF1832	0.24	+0.1
1,851,958	+		GFF1832	0.25	-0.7
1,851,959	-		GFF1832	0.25	-0.0
1,851,964	+		GFF1832	0.26	-2.0
1,851,972	-		GFF1832	0.26	-0.9
1,851,972	-		GFF1832	0.26	-1.3
1,851,997	+		GFF1832	0.28	-0.1
1,852,005	-		GFF1832	0.29	+0.0
1,852,013	-		GFF1832	0.29	-0.3
1,852,017	-		GFF1832	0.30	-2.3
1,852,020	+		GFF1832	0.30	+0.2
1,852,028	+		GFF1832	0.30	-0.6
1,852,028	+		GFF1832	0.30	+1.4
1,852,031	-		GFF1832	0.31	+1.2
1,852,033	+		GFF1832	0.31	+0.1
1,852,033	+		GFF1832	0.31	+0.1
1,852,033	+		GFF1832	0.31	+0.1
1,852,033	+		GFF1832	0.31	-0.4
1,852,033	+		GFF1832	0.31	+0.2
1,852,033	+		GFF1832	0.31	-0.4
1,852,033	+		GFF1832	0.31	-1.6
1,852,033	+		GFF1832	0.31	-0.1
1,852,033	+		GFF1832	0.31	+1.2
1,852,033	+		GFF1832	0.31	-1.2
1,852,033	+		GFF1832	0.31	-2.3
1,852,041	-		GFF1832	0.31	-0.3
1,852,041	-		GFF1832	0.31	-1.1
1,852,041	-		GFF1832	0.31	+0.2
1,852,041	-		GFF1832	0.31	-0.7
1,852,041	-		GFF1832	0.31	-1.3
1,852,041	-		GFF1832	0.31	+0.1
1,852,041	-		GFF1832	0.31	+1.0
1,852,041	-		GFF1832	0.31	-1.5
1,852,041	-		GFF1832	0.31	-1.4
1,852,041	-		GFF1832	0.31	+0.7
1,852,041	-		GFF1832	0.31	+1.1
1,852,043	+		GFF1832	0.32	-0.2
1,852,043	+		GFF1832	0.32	+1.4
1,852,044	+		GFF1832	0.32	-0.5
1,852,046	-		GFF1832	0.32	-0.7
1,852,051	-		GFF1832	0.32	-0.9
1,852,051	-		GFF1832	0.32	+0.0
1,852,052	-		GFF1832	0.32	-2.4
1,852,052	-		GFF1832	0.32	-1.0
1,852,052	-		GFF1832	0.32	+0.5
1,852,052	-		GFF1832	0.32	-1.0
1,852,052	-		GFF1832	0.32	-0.5
1,852,074	-		GFF1832	0.34	-1.5
1,852,075	+		GFF1832	0.34	-0.1
1,852,083	-		GFF1832	0.34	-0.2
1,852,083	-		GFF1832	0.34	-0.8
1,852,083	-		GFF1832	0.34	+0.1
1,852,117	+		GFF1832	0.37	-1.0
1,852,117	+		GFF1832	0.37	+0.4
1,852,131	-		GFF1832	0.38	+0.3
1,852,135	-		GFF1832	0.38	-0.4
1,852,143	+		GFF1832	0.39	-0.4
1,852,143	+		GFF1832	0.39	-0.3
1,852,145	+		GFF1832	0.39	+0.5
1,852,145	+		GFF1832	0.39	-0.9
1,852,153	-		GFF1832	0.40	-0.4
1,852,173	+		GFF1832	0.41	-0.4
1,852,183	+		GFF1832	0.42	-0.2
1,852,183	+		GFF1832	0.42	-1.4