Strain Fitness in Sphingobium sp. HT1-2 around GFF1799

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
1,819,638	+		GFF1798	0.32	-0.6
1,819,638	+		GFF1798	0.32	+1.2
1,819,638	+		GFF1798	0.32	+0.2
1,819,638	+		GFF1798	0.32	-1.0
1,819,638	+		GFF1798	0.32	+1.6
1,819,638	+		GFF1798	0.32	-1.5
1,819,646	-		GFF1798	0.33	-0.1
1,819,646	-		GFF1798	0.33	-0.6
1,819,653	-		GFF1798	0.34	-0.1
1,819,718	+		GFF1798	0.46	-0.6
1,819,718	+		GFF1798	0.46	-2.1
1,819,718	+		GFF1798	0.46	+0.1
1,819,736	-		GFF1798	0.49	-0.3
1,819,738	+		GFF1798	0.50	+0.3
1,819,740	+		GFF1798	0.50	+0.9
1,819,740	+		GFF1798	0.50	+0.3
1,819,745	+		GFF1798	0.51	-0.5
1,819,746	-		GFF1798	0.51	+0.1
1,819,746	-		GFF1798	0.51	-0.7
1,819,748	-		GFF1798	0.52	-0.6
1,819,748	-		GFF1798	0.52	+0.5
1,819,748	-		GFF1798	0.52	+1.8
1,819,748	-		GFF1798	0.52	-0.2
1,819,748	-		GFF1798	0.52	-0.4
1,819,748	-		GFF1798	0.52	-1.0
1,819,748	-		GFF1798	0.52	-0.2
1,819,748	-		GFF1798	0.52	+0.2
1,819,748	-		GFF1798	0.52	-0.5
1,819,748	-		GFF1798	0.52	+0.0
1,819,753	-		GFF1798	0.53	+0.4
1,819,753	-		GFF1798	0.53	+0.7
1,819,753	-		GFF1798	0.53	+0.2
1,819,762	+		GFF1798	0.54	-0.8
1,819,762	+		GFF1798	0.54	+0.6
1,819,770	-		GFF1798	0.56	-1.3
1,819,770	-		GFF1798	0.56	+0.4
1,819,772	-		GFF1798	0.56	+0.1
1,819,772	-		GFF1798	0.56	-0.1
1,819,790	+		GFF1798	0.59	-1.3
1,819,795	+		GFF1798	0.60	+0.1
1,819,795	+		GFF1798	0.60	+0.1
1,819,795	+		GFF1798	0.60	+0.0
1,819,803	-		GFF1798	0.62	+0.3
1,819,803	-		GFF1798	0.62	-2.5
1,819,803	-		GFF1798	0.62	-0.1
1,819,803	-		GFF1798	0.62	+0.8
1,819,803	-		GFF1798	0.62	-0.3
1,819,803	-		GFF1798	0.62	-0.6
1,819,803	-		GFF1798	0.62	+0.4
1,819,803	-		GFF1798	0.62	+0.1
1,819,803	-		GFF1798	0.62	-0.5
1,819,804	-		GFF1798	0.62	-0.9
1,819,825	+		GFF1798	0.66	+0.4
1,819,832	+		GFF1798	0.67	+0.0
1,819,833	-		GFF1798	0.67	-0.6
1,819,842	+		GFF1798	0.69	-1.9
1,819,852	+		GFF1798	0.71	+1.2
1,819,860	+		GFF1798	0.72	-0.5
1,819,867	-		GFF1798	0.73	-2.6
1,819,875	+		GFF1798	0.75	-2.3
1,819,875	+		GFF1798	0.75	+0.7
1,819,875	+		GFF1798	0.75	-0.1
1,819,875	+		GFF1798	0.75	-0.6
1,819,883	-		GFF1798	0.76	-1.3
1,819,888	-		GFF1798	0.77	-0.1
1,819,900	+		GFF1798	0.79	-0.7
1,819,908	-		GFF1798	0.81	+1.3
1,819,921	+		GFF1798	0.83	+0.2
1,819,922	-		GFF1798	0.84	-1.0
1,819,966	+				-2.1
1,819,984	+				+0.6
1,819,992	+				-1.2
1,819,992	-				+0.7
1,820,008	+				-0.2
1,820,008	+				+1.0
1,820,008	+				-1.1
1,820,016	-				+0.5
1,820,020	-				-0.9
1,820,021	-				-1.1
1,820,028	-				-2.3
1,820,029	+				+1.3
1,820,029	+				-0.9
1,820,037	-				-0.9
1,820,037	-				-2.5
1,820,037	-				+0.9
1,820,037	-				-0.6
1,820,050	+				-0.9
1,820,050	+				-0.5
1,820,053	-				+0.9
1,820,067	+				+0.7
1,820,072	+				+1.3
1,820,081	+				-1.7
1,820,087	+				-0.9
1,820,089	-				-0.1
1,820,094	-				-1.9
1,820,102	-				+0.2
1,820,112	-				-2.5
1,820,125	-				-0.2
1,820,136	+				-2.7
1,820,136	+				+0.6
1,820,136	+				-1.9
1,820,136	+				+0.3
1,820,138	+				-1.7
1,820,142	+				-2.5
1,820,142	+				+0.7
1,820,144	-				+0.6
1,820,179	+				-0.6
1,820,189	+				-0.8
1,820,189	+				-0.9
1,820,192	-				+0.9
1,820,192	-				+0.4
1,820,192	-				-1.3
1,820,202	+				-0.3
1,820,205	-				+0.2
1,820,207	+				-0.3
1,820,209	+				+0.9
1,820,209	+				-0.8
1,820,217	-				-0.9
1,820,217	-				-0.7
1,820,217	-				+0.8
1,820,242	+				-1.7
1,820,282	+				-1.8
1,820,282	+				+0.0
1,820,288	+				-0.5
1,820,290	-				-0.5
1,820,296	+				-0.6
1,820,296	-				-0.8
1,820,334	+				-0.3
1,820,337	+				-0.2
1,820,342	+				+1.3
1,820,342	+				+0.9
1,820,342	-				+0.8
1,820,342	-				-0.1
1,820,347	+				-1.6
1,820,347	+				+0.9
1,820,347	+				-1.9
1,820,347	+				-0.1
1,820,347	+				+0.1
1,820,347	+				-0.9
1,820,347	+				-2.0
1,820,347	+				+0.6
1,820,347	+				-1.5
1,820,355	-				+0.6
1,820,368	-				-2.5
1,820,368	-				-1.3
1,820,368	-				-0.2
1,820,368	-				-1.0
1,820,368	-				+0.4
1,820,368	-				-0.4
1,820,381	-				-1.0
1,820,381	-				-0.1
1,820,381	-				-0.5
1,820,381	-				-1.6
1,820,381	-				-1.2
1,820,381	-				+0.3
1,820,381	-				+0.8
1,820,381	-				+1.4
1,820,381	-				-0.1
1,820,381	-				-0.6
1,820,381	-				+0.0
1,820,386	+				+0.7
1,820,386	+				+0.4
1,820,389	-				+0.2
1,820,399	+				-1.0
1,820,399	+				-0.3
1,820,400	+				+0.3
1,820,412	+				-0.1
1,820,423	-				-1.5
1,820,427	-				+0.3
1,820,448	-				+0.8
1,820,452	+				-1.1
1,820,452	+				-0.5
1,820,455	-				+0.3
1,820,460	-				+0.8
1,820,460	-				+0.2
1,820,460	-				-1.9
1,820,460	-				-1.0
1,820,460	-				-0.8
1,820,465	-				-0.7
1,820,470	-				+0.2
1,820,539	-				+0.5
1,820,580	-				+0.2
1,820,580	-				-0.5
1,820,582	+				-1.2
1,820,587	+				-0.4
1,820,592	+				-0.1
1,820,601	+				-0.2
1,820,609	-				-0.2
1,820,634	-				-1.8
1,820,645	+		GFF1799	0.11	-0.0
1,820,656	+		GFF1799	0.13	-2.3
1,820,656	+		GFF1799	0.13	-0.4
1,820,657	+		GFF1799	0.13	-1.0
1,820,658	+		GFF1799	0.13	-2.4
1,820,658	+		GFF1799	0.13	-1.2
1,820,658	+		GFF1799	0.13	-1.3
1,820,658	+		GFF1799	0.13	-1.4
1,820,658	+		GFF1799	0.13	+0.6
1,820,658	+		GFF1799	0.13	-0.5
1,820,658	+		GFF1799	0.13	-0.2
1,820,658	+		GFF1799	0.13	-0.7
1,820,658	+		GFF1799	0.13	-0.6
1,820,658	+		GFF1799	0.13	-3.1
1,820,663	+		GFF1799	0.14	-2.6
1,820,664	+		GFF1799	0.14	-0.7
1,820,664	+		GFF1799	0.14	+0.7
1,820,664	+		GFF1799	0.14	+0.3
1,820,664	-		GFF1799	0.14	-0.3
1,820,666	-		GFF1799	0.14	-1.5
1,820,666	-		GFF1799	0.14	+0.5
1,820,672	-		GFF1799	0.15	-0.1
1,820,678	-		GFF1799	0.16	+1.1
1,820,682	+		GFF1799	0.17	+1.3
1,820,683	+		GFF1799	0.17	+0.1
1,820,689	-		GFF1799	0.18	+1.1
1,820,691	-		GFF1799	0.18	-0.4
1,820,691	-		GFF1799	0.18	+0.2
1,820,730	+		GFF1799	0.24	+0.7
1,820,760	+		GFF1799	0.29	-1.6
1,820,760	+		GFF1799	0.29	+0.8
1,820,779	+		GFF1799	0.32	-0.3
1,820,782	-		GFF1799	0.32	+0.7
1,820,813	+		GFF1799	0.37	-0.2
1,820,834	-		GFF1799	0.40	+1.5
1,820,840	+		GFF1799	0.41	+0.9
1,820,861	+		GFF1799	0.45	-0.6
1,820,869	-		GFF1799	0.46	-0.4
1,820,869	-		GFF1799	0.46	-0.8
1,820,906	+		GFF1799	0.52	-1.5
1,820,914	-		GFF1799	0.53	+1.0
1,820,914	-		GFF1799	0.53	+0.5
1,820,964	+		GFF1799	0.61	-0.6
1,820,972	-		GFF1799	0.62	-2.0
1,820,999	-		GFF1799	0.66	-0.3
1,821,009	+		GFF1799	0.68	+0.8
1,821,009	+		GFF1799	0.68	+0.5
1,821,009	+		GFF1799	0.68	-0.7
1,821,017	-		GFF1799	0.69	+0.5
1,821,083	+		GFF1799	0.79	+0.8
1,821,104	+		GFF1799	0.82	+1.3
1,821,104	+		GFF1799	0.82	+0.9
1,821,110	-		GFF1799	0.83	+0.5
1,821,112	-		GFF1799	0.84	-0.8
1,821,122	-		GFF1799	0.85	-0.7
1,821,148	+		GFF1799	0.89	-1.2
1,821,148	+		GFF1799	0.89	-1.8
1,821,166	+				+0.3
1,821,166	+				-0.7
1,821,166	+				-1.7
1,821,166	+				+0.6
1,821,167	+				+0.7
1,821,174	-				+0.8
1,821,188	+				+0.6
1,821,196	-				-1.8
1,821,203	+				+0.0
1,821,203	+				+0.4
1,821,205	+				+1.1
1,821,211	-				-1.4
1,821,224	+				-0.8
1,821,227	+				-0.2
1,821,232	-				+0.5
1,821,234	-				-1.8
1,821,241	+				-0.5
1,821,249	-				-0.3
1,821,251	+				+0.3
1,821,254	-				-1.2
1,821,257	+				+0.2
1,821,259	-				-0.7
1,821,264	-				+0.5
1,821,287	+				+0.9
1,821,292	+				-0.7
1,821,292	+				+0.4
1,821,295	-				-0.9
1,821,295	-				+0.2
1,821,297	+				+0.8
1,821,297	+				-0.4
1,821,297	+				+0.6
1,821,305	-				+0.5
1,821,317	+				-0.8
1,821,325	+				+1.2
1,821,325	+				+0.9
1,821,364	+				-2.2
1,821,373	-				-0.3
1,821,374	+				-1.0
1,821,395	+				-1.3
1,821,395	+				+1.4
1,821,395	+				+0.3
1,821,395	+				-1.6
1,821,403	-				-0.2
1,821,403	-				-0.7
1,821,403	-				-0.6
1,821,403	-				-1.4
1,821,403	-				+1.2
1,821,403	-				+0.3
1,821,403	-				+0.1
1,821,449	+				-0.2
1,821,462	-				-0.1
1,821,464	+				-1.5
1,821,464	+				-2.6
1,821,467	-				-0.6
1,821,472	-				-0.2
1,821,472	-				+0.5
1,821,477	-				-1.5
1,821,482	-				+0.1
1,821,496	-				-0.5
1,821,497	-				-1.7
1,821,525	-				+0.5
1,821,526	+				-0.7
1,821,526	+				-0.8
1,821,527	+				-1.2
1,821,527	+				-1.3
1,821,527	+				-1.0
1,821,529	-				+0.0
1,821,534	-				-0.6
1,821,535	-				-1.5
1,821,535	-				+0.8
1,821,535	-				+0.5
1,821,566	-				-0.1
1,821,594	+		GFF1800	0.11	+0.7
1,821,617	+		GFF1800	0.12	-0.8
1,821,651	+		GFF1800	0.14	-1.4
1,821,659	-		GFF1800	0.14	-1.7
1,821,673	+		GFF1800	0.15	-1.3
1,821,676	-		GFF1800	0.15	+1.2
1,821,782	-		GFF1800	0.21	-1.0
1,821,814	+		GFF1800	0.23	-0.6
1,821,851	-		GFF1800	0.25	+0.8
1,821,851	-		GFF1800	0.25	+1.5
1,821,853	+		GFF1800	0.25	+0.2
1,821,861	-		GFF1800	0.26	-0.8
1,821,862	-		GFF1800	0.26	-0.2
1,821,862	-		GFF1800	0.26	+0.4
1,821,862	-		GFF1800	0.26	-1.7
1,821,869	-		GFF1800	0.26	+1.1
1,821,893	+		GFF1800	0.28	+0.9
1,821,901	-		GFF1800	0.28	-0.1
1,821,901	-		GFF1800	0.28	-0.5
1,821,911	+		GFF1800	0.28	-1.3
1,821,947	+		GFF1800	0.30	-0.8
1,821,959	+		GFF1800	0.31	+1.1
1,821,981	+		GFF1800	0.32	+0.9
1,822,002	+		GFF1800	0.34	-0.9
1,822,011	+		GFF1800	0.34	-0.7
1,822,021	+		GFF1800	0.35	-0.3
1,822,044	+		GFF1800	0.36	-1.7
1,822,052	-		GFF1800	0.36	-0.2
1,822,060	-		GFF1800	0.37	+0.4
1,822,062	+		GFF1800	0.37	-0.0
1,822,065	-		GFF1800	0.37	-0.2
1,822,081	+		GFF1800	0.38	-3.8
1,822,083	+		GFF1800	0.38	-1.0
1,822,089	-		GFF1800	0.38	-0.8
1,822,089	-		GFF1800	0.38	-1.2
1,822,089	-		GFF1800	0.38	+0.0
1,822,089	-		GFF1800	0.38	-0.7
1,822,104	-		GFF1800	0.39	+0.0
1,822,135	+		GFF1800	0.41	-0.4
1,822,137	-		GFF1800	0.41	-0.5
1,822,141	+		GFF1800	0.41	-0.0
1,822,175	+		GFF1800	0.43	-2.2
1,822,175	+		GFF1800	0.43	+0.3
1,822,183	-		GFF1800	0.44	-0.5
1,822,183	-		GFF1800	0.44	+0.1
1,822,183	-		GFF1800	0.44	-1.0
1,822,187	+		GFF1800	0.44	-1.5
1,822,187	+		GFF1800	0.44	+0.4
1,822,192	+		GFF1800	0.44	-0.2
1,822,192	+		GFF1800	0.44	+0.9
1,822,192	+		GFF1800	0.44	-1.9
1,822,195	-		GFF1800	0.44	+0.9
1,822,195	-		GFF1800	0.44	+0.2
1,822,195	-		GFF1800	0.44	-2.3
1,822,200	+		GFF1800	0.45	-1.0
1,822,200	-		GFF1800	0.45	-0.4
1,822,200	-		GFF1800	0.45	-0.2
1,822,200	-		GFF1800	0.45	+0.5
1,822,200	-		GFF1800	0.45	-0.6
1,822,208	-		GFF1800	0.45	-0.8
1,822,210	+		GFF1800	0.45	-0.5
1,822,211	+		GFF1800	0.45	-0.7