Strain Fitness in Sphingobium sp. HT1-2 around GFF1749

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
1,774,883	+				-0.4
1,774,883	+				+0.5
1,774,889	-				-0.4
1,774,928	+				+0.4
1,774,928	+				-0.3
1,774,936	-				-0.5
1,774,936	-				+0.7
1,774,936	-				-1.2
1,774,936	-				+0.5
1,774,936	-				-0.3
1,774,942	-				-0.8
1,774,942	-				+0.3
1,774,942	-				-0.7
1,774,968	-				-0.5
1,774,970	-				-2.2
1,774,970	-				-0.7
1,775,049	+				-1.2
1,775,078	-				-1.3
1,775,082	+				-1.6
1,775,112	+				-0.2
1,775,136	+				-1.2
1,775,166	+		GFF1748	0.13	+0.2
1,775,171	+		GFF1748	0.14	-0.8
1,775,171	+		GFF1748	0.14	+0.1
1,775,176	+		GFF1748	0.14	-0.3
1,775,176	+		GFF1748	0.14	-1.3
1,775,176	+		GFF1748	0.14	+0.4
1,775,176	+		GFF1748	0.14	-0.1
1,775,176	+		GFF1748	0.14	-0.5
1,775,176	+		GFF1748	0.14	+0.7
1,775,176	+		GFF1748	0.14	-0.5
1,775,176	+		GFF1748	0.14	-0.2
1,775,176	+		GFF1748	0.14	-0.8
1,775,184	-		GFF1748	0.15	+0.3
1,775,184	-		GFF1748	0.15	-0.5
1,775,184	-		GFF1748	0.15	-1.5
1,775,184	-		GFF1748	0.15	-0.5
1,775,184	-		GFF1748	0.15	-1.9
1,775,184	-		GFF1748	0.15	+1.1
1,775,184	-		GFF1748	0.15	+1.9
1,775,216	-		GFF1748	0.19	-2.3
1,775,232	+		GFF1748	0.21	-0.9
1,775,240	-		GFF1748	0.22	-1.2
1,775,268	+		GFF1748	0.25	+0.4
1,775,281	-		GFF1748	0.27	-0.9
1,775,294	+		GFF1748	0.29	+0.3
1,775,302	-		GFF1748	0.30	+0.1
1,775,321	+		GFF1748	0.32	-0.4
1,775,321	+		GFF1748	0.32	+1.0
1,775,321	+		GFF1748	0.32	-0.1
1,775,326	+		GFF1748	0.33	-1.2
1,775,329	-		GFF1748	0.33	-0.9
1,775,329	-		GFF1748	0.33	-0.2
1,775,329	-		GFF1748	0.33	-0.6
1,775,357	-		GFF1748	0.36	-1.2
1,775,398	+		GFF1748	0.41	-1.7
1,775,401	-		GFF1748	0.42	-0.1
1,775,403	+		GFF1748	0.42	+0.8
1,775,407	+		GFF1748	0.43	-0.9
1,775,407	-		GFF1748	0.43	-1.2
1,775,408	-		GFF1748	0.43	+0.1
1,775,421	-		GFF1748	0.44	+0.3
1,775,421	-		GFF1748	0.44	-0.1
1,775,426	-		GFF1748	0.45	+1.0
1,775,432	-		GFF1748	0.46	-0.4
1,775,461	-		GFF1748	0.49	+0.7
1,775,507	-		GFF1748	0.55	-0.5
1,775,508	+		GFF1748	0.55	+1.0
1,775,513	+		GFF1748	0.56	-1.1
1,775,513	+		GFF1748	0.56	-1.5
1,775,513	+		GFF1748	0.56	-0.1
1,775,521	-		GFF1748	0.56	+0.1
1,775,521	-		GFF1748	0.56	-0.0
1,775,521	-		GFF1748	0.56	-1.7
1,775,553	+		GFF1748	0.60	-3.1
1,775,565	-		GFF1748	0.62	+0.0
1,775,565	-		GFF1748	0.62	-0.5
1,775,590	+		GFF1748	0.65	+0.0
1,775,603	-		GFF1748	0.67	-0.6
1,775,606	+		GFF1748	0.67	-0.6
1,775,608	-		GFF1748	0.67	+0.9
1,775,613	-		GFF1748	0.68	+0.3
1,775,614	-		GFF1748	0.68	-1.5
1,775,614	-		GFF1748	0.68	-0.2
1,775,623	+		GFF1748	0.69	-1.3
1,775,630	-		GFF1748	0.70	+2.0
1,775,680	+		GFF1748	0.76	+0.5
1,775,688	-		GFF1748	0.77	+0.7
1,775,688	-		GFF1748	0.77	-1.0
1,775,689	-		GFF1748	0.77	-0.9
1,775,690	+		GFF1748	0.77	-0.6
1,775,695	+		GFF1748	0.78	+0.4
1,775,704	+		GFF1748	0.79	-1.6
1,775,712	-		GFF1748	0.80	+1.0
1,775,734	-		GFF1748	0.83	+1.5
1,775,736	-		GFF1748	0.83	+1.4
1,775,739	+		GFF1748	0.83	-1.3
1,775,747	-		GFF1748	0.84	+0.5
1,775,757	-		GFF1748	0.85	-1.6
1,775,757	-		GFF1748	0.85	-1.7
1,775,757	-		GFF1748	0.85	+0.3
1,775,762	-		GFF1748	0.86	-2.0
1,775,775	-		GFF1748	0.88	-0.2
1,775,775	-		GFF1748	0.88	+0.7
1,775,778	-		GFF1748	0.88	-1.4
1,775,807	-				-0.1
1,775,815	-				+0.5
1,775,817	-				-0.9
1,775,823	+				-0.5
1,775,833	+				-0.5
1,775,841	-				-0.4
1,775,848	+				+0.1
1,775,848	-				+1.8
1,775,856	+				+0.3
1,775,864	-				+1.4
1,775,869	+				-0.4
1,775,890	-				-0.9
1,775,907	-				+1.2
1,775,930	+				-0.3
1,775,937	-				+0.3
1,775,942	-				-0.4
1,775,944	-				-0.6
1,776,005	+				+1.1
1,776,005	+				-0.9
1,776,013	-				-0.2
1,776,013	-				+0.8
1,776,013	-				-0.4
1,776,013	-				+0.1
1,776,015	-				+0.4
1,776,030	-				-0.7
1,776,043	+				+1.8
1,776,053	+		GFF1749	0.10	-0.0
1,776,053	+		GFF1749	0.10	-0.2
1,776,053	+		GFF1749	0.10	-0.3
1,776,061	-		GFF1749	0.11	-0.4
1,776,071	-		GFF1749	0.11	-0.5
1,776,078	+		GFF1749	0.12	-0.2
1,776,080	-		GFF1749	0.12	-1.9
1,776,108	-		GFF1749	0.14	-0.7
1,776,121	+		GFF1749	0.14	-0.8
1,776,121	+		GFF1749	0.14	-0.2
1,776,121	+		GFF1749	0.14	-2.7
1,776,121	+		GFF1749	0.14	+0.5
1,776,129	-		GFF1749	0.15	-0.4
1,776,129	-		GFF1749	0.15	+0.2
1,776,129	-		GFF1749	0.15	+0.7
1,776,129	-		GFF1749	0.15	-0.1
1,776,129	-		GFF1749	0.15	-0.1
1,776,132	+		GFF1749	0.15	-0.1
1,776,145	-		GFF1749	0.16	+1.1
1,776,145	-		GFF1749	0.16	+1.0
1,776,150	-		GFF1749	0.16	+0.1
1,776,169	-		GFF1749	0.17	-0.5
1,776,191	-		GFF1749	0.18	-1.4
1,776,191	-		GFF1749	0.18	+0.5
1,776,206	-		GFF1749	0.19	-0.6
1,776,217	-		GFF1749	0.20	-0.1
1,776,219	+		GFF1749	0.20	-0.3
1,776,219	+		GFF1749	0.20	-0.1
1,776,219	+		GFF1749	0.20	+0.5
1,776,227	-		GFF1749	0.20	+0.1
1,776,261	+		GFF1749	0.22	+0.4
1,776,266	+		GFF1749	0.23	-2.4
1,776,274	-		GFF1749	0.23	+0.6
1,776,276	+		GFF1749	0.23	-1.3
1,776,296	+		GFF1749	0.24	+1.4
1,776,305	+		GFF1749	0.25	-0.4
1,776,305	+		GFF1749	0.25	+1.5
1,776,305	+		GFF1749	0.25	-0.1
1,776,310	+		GFF1749	0.25	-0.6
1,776,310	+		GFF1749	0.25	-0.5
1,776,310	+		GFF1749	0.25	-0.6
1,776,320	-		GFF1749	0.26	+0.1
1,776,344	-		GFF1749	0.27	-2.3
1,776,369	-		GFF1749	0.29	-0.8
1,776,369	-		GFF1749	0.29	+1.1
1,776,388	-		GFF1749	0.30	-0.3
1,776,390	-		GFF1749	0.30	-1.0
1,776,399	-		GFF1749	0.30	-0.6
1,776,478	-		GFF1749	0.35	-0.5
1,776,478	-		GFF1749	0.35	-0.7
1,776,494	+		GFF1749	0.36	-1.0
1,776,495	-		GFF1749	0.36	-0.1
1,776,502	-		GFF1749	0.36	-0.0
1,776,510	+		GFF1749	0.37	-0.4
1,776,527	+		GFF1749	0.38	-2.0
1,776,545	+		GFF1749	0.39	-0.8
1,776,553	-		GFF1749	0.39	-1.5
1,776,562	+		GFF1749	0.40	-0.0
1,776,607	-		GFF1749	0.42	-0.7
1,776,665	-		GFF1749	0.46	+0.1
1,776,687	-		GFF1749	0.47	-0.7
1,776,695	+		GFF1749	0.47	-0.2
1,776,705	+		GFF1749	0.48	+0.5
1,776,713	-		GFF1749	0.48	+1.1
1,776,719	+		GFF1749	0.49	-0.6
1,776,734	+		GFF1749	0.50	-2.0
1,776,734	+		GFF1749	0.50	-0.4
1,776,742	-		GFF1749	0.50	-0.0
1,776,776	+		GFF1749	0.52	+0.2
1,776,828	-		GFF1749	0.55	+0.4
1,776,828	-		GFF1749	0.55	+1.2
1,776,839	+		GFF1749	0.56	-0.5
1,776,865	+		GFF1749	0.57	-0.5
1,776,872	+		GFF1749	0.58	-0.7
1,776,872	+		GFF1749	0.58	-0.2
1,776,880	-		GFF1749	0.58	+1.1
1,776,880	-		GFF1749	0.58	+0.2
1,776,880	-		GFF1749	0.58	-1.2
1,776,885	-		GFF1749	0.58	+0.2
1,776,890	-		GFF1749	0.59	-0.1
1,776,890	-		GFF1749	0.59	+0.2
1,776,929	+		GFF1749	0.61	-0.9
1,776,932	-		GFF1749	0.61	-0.7
1,776,938	-		GFF1749	0.61	+0.7
1,776,942	-		GFF1749	0.62	-1.6
1,776,966	+		GFF1749	0.63	-0.6
1,777,021	+		GFF1749	0.66	-0.5
1,777,044	+		GFF1749	0.67	+0.7
1,777,052	-		GFF1749	0.68	-2.2
1,777,052	-		GFF1749	0.68	+0.8
1,777,068	+		GFF1749	0.69	+0.4
1,777,073	+		GFF1749	0.69	-0.9
1,777,073	+		GFF1749	0.69	+1.3
1,777,073	+		GFF1749	0.69	-0.7
1,777,073	+		GFF1749	0.69	-1.3
1,777,073	+		GFF1749	0.69	-1.0
1,777,073	+		GFF1749	0.69	+0.5
1,777,073	+		GFF1749	0.69	+0.6
1,777,079	+		GFF1749	0.69	-0.0
1,777,079	+		GFF1749	0.69	-0.8
1,777,079	+		GFF1749	0.69	-0.4
1,777,079	+		GFF1749	0.69	-0.4
1,777,079	+		GFF1749	0.69	-0.7
1,777,081	-		GFF1749	0.70	+0.3
1,777,081	-		GFF1749	0.70	+0.6
1,777,084	+		GFF1749	0.70	+0.7
1,777,087	-		GFF1749	0.70	-0.0
1,777,087	-		GFF1749	0.70	-0.1
1,777,087	-		GFF1749	0.70	+0.3
1,777,087	-		GFF1749	0.70	+0.8
1,777,087	-		GFF1749	0.70	+0.3
1,777,087	-		GFF1749	0.70	-1.6
1,777,089	+		GFF1749	0.70	-1.3
1,777,089	+		GFF1749	0.70	-1.0
1,777,097	-		GFF1749	0.71	-0.8
1,777,097	-		GFF1749	0.71	+0.2
1,777,097	-		GFF1749	0.71	+0.4
1,777,097	-		GFF1749	0.71	+0.7
1,777,104	-		GFF1749	0.71	+1.0
1,777,104	-		GFF1749	0.71	+0.5
1,777,111	+		GFF1749	0.71	-2.5
1,777,135	+		GFF1749	0.73	+0.4
1,777,150	+		GFF1749	0.74	-0.0
1,777,169	+		GFF1749	0.75	+0.3
1,777,215	+		GFF1749	0.77	-0.5
1,777,222	+		GFF1749	0.78	+1.7
1,777,225	-		GFF1749	0.78	-1.4
1,777,227	+		GFF1749	0.78	-0.3
1,777,234	+		GFF1749	0.78	+0.4
1,777,239	+		GFF1749	0.79	+0.1
1,777,242	-		GFF1749	0.79	-0.0
1,777,247	-		GFF1749	0.79	-0.4
1,777,247	-		GFF1749	0.79	+1.4
1,777,247	-		GFF1749	0.79	+0.9
1,777,247	-		GFF1749	0.79	+0.6
1,777,247	-		GFF1749	0.79	-0.2
1,777,247	-		GFF1749	0.79	-0.0
1,777,280	-		GFF1749	0.81	+0.4
1,777,285	+		GFF1749	0.81	-2.1
1,777,290	+		GFF1749	0.82	+0.3
1,777,292	+		GFF1749	0.82	+0.5
1,777,292	-		GFF1749	0.82	-0.6
1,777,297	+		GFF1749	0.82	-0.3
1,777,298	-		GFF1749	0.82	-0.7
1,777,305	-		GFF1749	0.82	+0.4
1,777,317	+		GFF1749	0.83	+0.9
1,777,317	+		GFF1749	0.83	+1.0
1,777,325	-		GFF1749	0.84	+1.8
1,777,359	+		GFF1749	0.86	-0.7
1,777,364	+		GFF1749	0.86	+0.3
1,777,372	-		GFF1749	0.86	-1.3
1,777,374	+		GFF1749	0.86	-1.0
1,777,374	+		GFF1749	0.86	-0.4
1,777,374	+		GFF1749	0.86	-0.3
1,777,377	-		GFF1749	0.87	-0.1
1,777,377	-		GFF1749	0.87	+0.1
1,777,382	-		GFF1749	0.87	-1.7
1,777,382	-		GFF1749	0.87	-0.3
1,777,382	-		GFF1749	0.87	+0.3
1,777,390	+		GFF1749	0.87	+0.8
1,777,393	-		GFF1749	0.88	+1.1
1,777,433	+		GFF1749	0.90	+0.2
1,777,441	+				+0.3
1,777,463	+				+0.1
1,777,471	+				+1.4
1,777,471	-				-0.8
1,777,478	+				-0.6
1,777,478	+				-1.4
1,777,486	-				-1.2
1,777,493	+				+0.7
1,777,493	+				-0.5
1,777,501	-				+0.3
1,777,501	-				-0.0
1,777,501	-				-1.2
1,777,511	-				+0.9
1,777,517	+				-2.3
1,777,517	+				-1.3
1,777,518	-				-0.8
1,777,525	-				+0.3
1,777,527	+				+1.2
1,777,543	+				+0.3
1,777,549	+				-2.7
1,777,549	+				-0.2
1,777,549	+				+0.4
1,777,549	+				+0.9
1,777,549	+				-0.6
1,777,549	+				+0.2
1,777,549	+				+1.4
1,777,549	+				+0.6
1,777,549	+				+0.1
1,777,556	+				-1.3
1,777,557	-				-1.5
1,777,557	-				+1.2
1,777,557	-				+0.5
1,777,557	-				-1.8
1,777,557	-				-0.7
1,777,557	-				-1.6
1,777,557	-				+1.1
1,777,557	-				+0.1
1,777,557	-				+0.4
1,777,580	+				-0.2
1,777,590	+				-2.0
1,777,590	+				-0.5
1,777,593	+				+0.5
1,777,593	+				-0.1
1,777,593	+				+1.0
1,777,596	-				-1.3
1,777,598	-				-0.4
1,777,598	-				-0.1
1,777,600	+				-0.6
1,777,601	-				-1.1
1,777,606	-				+1.1
1,777,606	-				-0.5
1,777,608	-				+0.6
1,777,616	+				-2.7
1,777,651	+				-0.6
1,777,677	+				-1.0
1,777,707	+				-0.7
1,777,710	+				-1.9
1,777,713	-				-0.5
1,777,718	-				-0.4
1,777,718	-				-2.0
1,777,718	-				+0.8
1,777,718	-				-0.8
1,777,718	-				+1.6
1,777,755	+				-1.4
1,777,772	-		GFF1750	0.10	+1.0
1,777,800	+		GFF1750	0.15	-1.0
1,777,808	-		GFF1750	0.16	-0.6
1,777,808	-		GFF1750	0.16	+0.7
1,777,814	+		GFF1750	0.17	-0.0
1,777,814	+		GFF1750	0.17	-0.5
1,777,818	-		GFF1750	0.18	+0.5
1,777,822	+		GFF1750	0.19	-0.7
1,777,822	+		GFF1750	0.19	-0.3
1,777,822	+		GFF1750	0.19	-2.8
1,777,849	-		GFF1750	0.23	-0.2
1,777,866	+		GFF1750	0.26	+0.6
1,777,920	-		GFF1750	0.35	-0.1
1,777,930	-		GFF1750	0.37	-2.0
1,777,934	+		GFF1750	0.37	+0.9
1,777,942	-		GFF1750	0.39	+0.5
1,777,952	-		GFF1750	0.40	-1.6
1,778,008	-		GFF1750	0.50	-2.0
1,778,037	+		GFF1750	0.55	+0.2
1,778,037	+		GFF1750	0.55	+0.0
1,778,048	+		GFF1750	0.57	-1.5
1,778,087	-		GFF1750	0.63	-0.4
1,778,087	-		GFF1750	0.63	-0.7
1,778,094	+		GFF1750	0.64	-1.3
1,778,094	+		GFF1750	0.64	+0.3
1,778,094	+		GFF1750	0.64	-0.1
1,778,102	-		GFF1750	0.66	+0.2
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1,778,102	-		GFF1750	0.66	-0.9
1,778,102	-		GFF1750	0.66	-0.2
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1,778,121	+		GFF1750	0.69	-0.3
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1,778,144	+		GFF1750	0.73	+0.1
1,778,153	+		GFF1750	0.74	+1.3
1,778,160	+		GFF1750	0.75	-1.5
1,778,160	+		GFF1750	0.75	-2.2
1,778,160	+		GFF1750	0.75	-1.6
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1,778,161	-		GFF1750	0.76	-1.3
1,778,161	-		GFF1750	0.76	-1.1
1,778,168	-		GFF1750	0.77	-1.1
1,778,168	-		GFF1750	0.77	-0.5
1,778,206	-		GFF1750	0.83	+1.0
1,778,207	-		GFF1750	0.83	-0.1
1,778,237	-		GFF1750	0.88	-0.9
1,778,255	+				-0.6
1,778,263	-				-0.5
1,778,263	-				+0.0
1,778,270	-				-0.1
1,778,313	+				-2.9
1,778,313	+				+0.1
1,778,315	+				+0.7
1,778,318	+				+0.1
1,778,321	-				-0.7
1,778,323	+				+1.1
1,778,323	+				-0.6
1,778,323	+				-0.7
1,778,323	+				-1.5
1,778,323	+				+0.2
1,778,323	+				-0.3
1,778,323	+				+0.5
1,778,323	+				-0.6
1,778,326	-				-1.3
1,778,328	+				+0.2
1,778,331	-				-0.5
1,778,331	-				+1.0
1,778,331	-				-1.3
1,778,331	-				-1.5
1,778,331	-				+0.5
1,778,331	-				-1.1
1,778,336	+				+0.1
1,778,336	-				+1.9
1,778,337	+				-0.1
1,778,339	-				-0.7
1,778,339	-				+0.2
1,778,345	-				-0.8
1,778,367	+				-2.3
1,778,367	+				-2.0
1,778,367	+				+0.8
1,778,370	-				+0.4
1,778,370	-				-0.3
1,778,375	-				+0.9
1,778,375	-				-2.2
1,778,375	-				+0.2
1,778,375	-				+0.2
1,778,388	+				-1.2
1,778,393	+				-0.1
1,778,393	+				+1.0
1,778,393	+				-0.9
1,778,411	+				+0.2
1,778,419	-				+1.1
1,778,419	-				+0.0
1,778,460	-		GFF1751	0.10	+0.4
1,778,462	+		GFF1751	0.11	-0.1
1,778,475	-		GFF1751	0.12	-0.0
1,778,475	-		GFF1751	0.12	-1.5
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1,778,485	-		GFF1751	0.13	-0.9
1,778,490	-		GFF1751	0.14	-1.3
1,778,525	+		GFF1751	0.17	-1.8
1,778,548	+		GFF1751	0.20	-0.8
1,778,556	-		GFF1751	0.21	-0.2
1,778,581	+		GFF1751	0.23	-0.7
1,778,589	-		GFF1751	0.24	+0.4
1,778,595	+		GFF1751	0.25	-2.0