Strain Fitness in Sphingobium sp. HT1-2 around GFF1697

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
1,723,920	+		GFF1696	0.90	+0.2
1,723,926	+		GFF1696	0.90	-2.7
1,723,935	-				+0.0
1,723,943	+				+0.0
1,723,945	+				+0.2
1,723,950	+				-0.3
1,723,955	+				-0.5
1,723,958	-				+0.1
1,723,973	+				+0.7
1,723,984	+				-0.5
1,723,984	+				-0.5
1,723,993	+				+1.3
1,724,001	-				-0.2
1,724,005	+				-0.5
1,724,005	+				-1.9
1,724,014	+				+0.6
1,724,014	+				-0.3
1,724,014	+				-1.3
1,724,014	+				-0.1
1,724,014	+				-0.5
1,724,022	+				-1.3
1,724,022	-				+0.5
1,724,022	-				-0.6
1,724,022	-				-0.7
1,724,043	+				+1.0
1,724,043	+				+1.0
1,724,051	-				-1.3
1,724,053	+				+0.0
1,724,053	+				-0.1
1,724,053	+				-0.3
1,724,061	-				-0.5
1,724,075	+				-1.9
1,724,085	+				-0.5
1,724,092	-				+0.2
1,724,092	-				+1.5
1,724,115	+				-1.3
1,724,125	+				-0.1
1,724,130	+				+0.2
1,724,130	+				-0.5
1,724,130	+				+0.5
1,724,133	-				+0.5
1,724,133	-				+0.5
1,724,133	-				-0.6
1,724,138	-				+0.4
1,724,138	-				+0.9
1,724,138	-				+0.4
1,724,138	-				-0.5
1,724,140	+				+1.0
1,724,160	+				-0.0
1,724,160	+				-0.4
1,724,168	-				+0.7
1,724,168	-				-0.1
1,724,183	-				+0.1
1,724,183	-				-0.2
1,724,183	-				-0.2
1,724,202	-				-0.1
1,724,257	+				+0.1
1,724,320	-				-1.7
1,724,374	-				-0.1
1,724,394	+				-0.5
1,724,403	+				+0.3
1,724,477	+				+0.5
1,724,512	+				+0.5
1,724,562	+				-1.6
1,724,621	-				-0.6
1,724,738	+				+0.2
1,724,756	+				+1.2
1,724,780	+				+0.2
1,724,892	-				-1.1
1,724,900	-				-1.2
1,724,940	-				-0.5
1,724,940	-				-0.9
1,724,942	+				-2.6
1,724,952	+				+0.5
1,724,952	+				+0.4
1,724,952	+				-0.1
1,724,952	+				-2.6
1,724,976	+				-1.0
1,725,000	+				+0.1
1,725,007	+				-0.9
1,725,007	+				+0.5
1,725,007	+				-0.5
1,725,007	+				+0.0
1,725,007	+				+1.5
1,725,007	+				-0.6
1,725,007	+				+0.4
1,725,007	+				+0.4
1,725,007	+				+0.5
1,725,007	+				-0.1
1,725,007	+				-0.3
1,725,007	+				-0.6
1,725,007	+				-1.6
1,725,007	+				+0.1
1,725,007	+				+0.5
1,725,007	+				+0.5
1,725,007	+				-1.2
1,725,007	+				+0.5
1,725,007	+				-0.7
1,725,007	+				-2.4
1,725,007	+				+0.2
1,725,007	+				+1.2
1,725,007	+				-1.7
1,725,007	+				-0.3
1,725,008	-				-2.1
1,725,008	-				-0.8
1,725,008	-				+0.5
1,725,008	-				-1.3
1,725,008	-				-1.8
1,725,012	+				-0.6
1,725,015	-				-0.5
1,725,015	-				+0.5
1,725,015	-				+1.2
1,725,015	-				+0.4
1,725,015	-				-1.6
1,725,015	-				+0.7
1,725,015	-				-0.1
1,725,015	-				+0.1
1,725,015	-				+0.3
1,725,015	-				-0.8
1,725,015	-				+0.0
1,725,015	-				+0.2
1,725,015	-				+0.2
1,725,015	-				-1.5
1,725,015	-				-1.6
1,725,015	-				+0.2
1,725,015	-				+0.7
1,725,015	-				+0.5
1,725,015	-				+1.0
1,725,015	-				-1.6
1,725,015	-				+0.0
1,725,015	-				-0.4
1,725,015	-				+0.2
1,725,015	-				+0.7
1,725,015	-				+1.3
1,725,015	-				+0.3
1,725,015	-				-0.4
1,725,015	-				+0.4
1,725,015	-				+0.9
1,725,015	-				+0.7
1,725,015	-				-0.4
1,725,015	-				-0.4
1,725,015	-				+0.5
1,725,015	-				-0.1
1,725,015	-				-1.7
1,725,017	+				-0.9
1,725,017	+				+2.2
1,725,017	+				+0.6
1,725,017	+				-0.3
1,725,017	+				+0.0
1,725,017	+				-0.0
1,725,017	+				-1.2
1,725,017	+				-1.1
1,725,017	+				-1.1
1,725,017	+				-0.9
1,725,017	+				-1.1
1,725,017	+				-1.6
1,725,017	+				-0.5
1,725,017	+				-1.7
1,725,017	+				+0.8
1,725,017	+				-0.7
1,725,017	+				+1.1
1,725,017	+				+0.9
1,725,017	+				-0.0
1,725,017	+				-0.1
1,725,017	+				+0.2
1,725,017	-				-0.2
1,725,020	-				-0.7
1,725,025	-				-2.1
1,725,025	-				+0.7
1,725,025	-				+0.5
1,725,025	-				+0.7
1,725,025	-				-2.1
1,725,025	-				-0.0
1,725,025	-				+0.3
1,725,025	-				+0.3
1,725,025	-				-0.6
1,725,025	-				+1.0
1,725,025	-				+0.6
1,725,025	-				+0.5
1,725,025	-				-0.3
1,725,025	-				+1.2
1,725,025	-				+0.2
1,725,025	-				+1.3
1,725,025	-				+0.2
1,725,025	-				-0.5
1,725,025	-				-1.5
1,725,025	-				+0.4
1,725,025	-				-1.7
1,725,025	-				+0.9
1,725,025	-				+0.5
1,725,025	-				-1.7
1,725,038	+		GFF1697	0.10	-1.9
1,725,038	-		GFF1697	0.10	+0.6
1,725,038	-		GFF1697	0.10	-1.5
1,725,052	+		GFF1697	0.12	-0.0
1,725,052	+		GFF1697	0.12	-2.3
1,725,052	+		GFF1697	0.12	+0.3
1,725,060	-		GFF1697	0.12	-1.5
1,725,060	-		GFF1697	0.12	+0.3
1,725,081	+		GFF1697	0.14	+0.3
1,725,081	+		GFF1697	0.14	-0.5
1,725,089	-		GFF1697	0.15	+0.1
1,725,090	-		GFF1697	0.15	-1.3
1,725,109	-		GFF1697	0.17	+0.3
1,725,117	+		GFF1697	0.17	-0.5
1,725,155	+		GFF1697	0.21	+0.1
1,725,163	-		GFF1697	0.21	+0.2
1,725,163	-		GFF1697	0.21	-0.1
1,725,384	+		GFF1697	0.41	-0.8
1,725,454	+		GFF1697	0.47	-0.3
1,725,552	+		GFF1697	0.55	+0.6
1,725,566	-		GFF1697	0.56	+0.5
1,725,600	+		GFF1697	0.59	+0.9
1,725,620	+		GFF1697	0.61	+1.6
1,725,630	+		GFF1697	0.62	-0.3
1,725,726	+		GFF1697	0.70	+1.0
1,725,726	+		GFF1697	0.70	-1.2
1,725,794	-		GFF1697	0.76	-0.4
1,725,804	-		GFF1697	0.77	+0.4
1,725,807	+		GFF1697	0.77	-1.3
1,725,816	-		GFF1697	0.78	-0.8
1,725,833	-		GFF1697	0.80	-0.2
1,725,843	+		GFF1697	0.81	+0.3
1,725,843	+		GFF1697	0.81	-1.0
1,725,843	+		GFF1697	0.81	+0.4
1,725,857	-		GFF1697	0.82	-0.3
1,725,980	-				-1.3
1,725,980	-				-0.1
1,726,016	-				+1.2
1,726,025	-				+0.7
1,726,025	-				-1.3
1,726,025	-				-1.0
1,726,113	+				-1.1
1,726,168	+				-2.1
1,726,175	+				-2.4
1,726,176	-				+1.5
1,726,186	+				+0.0
1,726,186	-				-1.1
1,726,186	-				-1.9
1,726,186	-				-0.9
1,726,207	-				+1.1
1,726,244	-				+0.1
1,726,257	+				+0.8
1,726,263	+				-1.4
1,726,264	+				-0.4
1,726,265	-				-1.3
1,726,265	-				+1.3
1,726,267	-				-0.3
1,726,269	+				+0.5
1,726,293	+		GFF1698	0.21	+0.9
1,726,310	+		GFF1698	0.31	-0.3
1,726,311	-		GFF1698	0.31	+1.0
1,726,319	+		GFF1698	0.36	+0.8
1,726,345	-		GFF1698	0.50	-0.1
1,726,345	-		GFF1698	0.50	-0.2
1,726,345	-		GFF1698	0.50	-0.5
1,726,396	+		GFF1698	0.79	-0.2
1,726,404	-		GFF1698	0.84	+0.9
1,726,404	-		GFF1698	0.84	+0.2
1,726,406	+		GFF1698	0.85	+0.4
1,726,426	+				+0.1
1,726,427	+				-0.3
1,726,435	-				+0.7
1,726,435	-				-0.6
1,726,451	-				-1.5
1,726,477	-		GFF1699	0.16	+2.0
1,726,496	-		GFF1699	0.23	+0.9
1,726,496	-		GFF1699	0.23	-1.8
1,726,496	-		GFF1699	0.23	+0.7
1,726,498	+		GFF1699	0.24	+0.5
1,726,498	+		GFF1699	0.24	-1.5
1,726,498	+		GFF1699	0.24	-0.9
1,726,498	+		GFF1699	0.24	-1.1
1,726,498	+		GFF1699	0.24	-0.8
1,726,498	+		GFF1699	0.24	+0.5
1,726,506	-		GFF1699	0.27	+2.0
1,726,506	-		GFF1699	0.27	+1.7
1,726,506	-		GFF1699	0.27	+0.2
1,726,514	+		GFF1699	0.30	-0.1
1,726,529	-		GFF1699	0.36	+0.2
1,726,535	-		GFF1699	0.38	+0.0
1,726,570	+		GFF1699	0.51	-0.4
1,726,577	-		GFF1699	0.53	-2.5
1,726,577	-		GFF1699	0.53	+0.0
1,726,604	+		GFF1699	0.63	-0.2
1,726,617	+		GFF1699	0.68	-0.3
1,726,620	-		GFF1699	0.69	-1.6
1,726,673	-		GFF1699	0.88	-1.1
1,726,706	-				+0.9
1,726,706	-				-1.8
1,726,739	+				-1.5
1,726,739	+				-0.1
1,726,744	-				+0.5
1,726,746	+				+0.2
1,726,747	-				+0.4
1,726,775	+				+0.2
1,726,775	+				-0.5
1,726,775	+				+0.4
1,726,775	+				-0.1
1,726,775	+				-1.7
1,726,775	+				+0.7
1,726,775	+				+1.4
1,726,775	+				-1.6
1,726,775	+				+0.5
1,726,775	+				-1.0
1,726,775	+				-0.7
1,726,775	+				-2.3
1,726,775	+				-1.0
1,726,775	+				+0.3
1,726,775	+				-0.4
1,726,775	+				+0.7
1,726,775	+				-0.2
1,726,775	+				-0.3
1,726,781	+				-1.7
1,726,783	-				+0.4
1,726,783	-				-0.1
1,726,783	-				+0.0
1,726,783	-				+0.2
1,726,783	-				-0.3
1,726,783	-				+0.2
1,726,783	-				-2.3
1,726,783	-				-0.1
1,726,783	-				-1.6
1,726,783	-				-1.2
1,726,783	-				+0.8
1,726,783	-				+0.5
1,726,783	-				-0.6
1,726,783	-				+0.5
1,726,783	-				-0.8
1,726,783	-				+0.7
1,726,783	-				-1.6
1,726,783	-				+0.6
1,726,783	-				-3.1
1,726,783	-				-1.1
1,726,783	-				-0.5
1,726,783	-				-0.1
1,726,783	-				-1.6
1,726,783	-				-1.2
1,726,783	-				+0.3
1,726,803	-				-0.6
1,726,826	-				-1.6
1,726,828	+				-0.4
1,726,834	+				+1.0
1,726,839	+				-1.3
1,726,839	+				+0.5
1,726,839	+				-0.5
1,726,839	+				-2.7
1,726,839	+				-2.7
1,726,839	+				+0.9
1,726,839	+				+0.2
1,726,839	+				+0.6
1,726,839	+				+0.2
1,726,839	+				-1.8
1,726,841	-				-0.5
1,726,847	-				-1.6
1,726,847	-				+0.2
1,726,847	-				-0.4
1,726,847	-				+0.7
1,726,847	-				-0.1
1,726,847	-				+0.5
1,726,847	-				+1.1
1,726,847	-				+1.5
1,726,847	-				+0.3
1,726,852	-				-0.1
1,726,877	+				-0.1
1,726,877	+				-1.3
1,726,885	-				+1.0
1,726,897	-				+1.1
1,726,928	-				-1.4
1,726,990	+		GFF1700	0.12	-0.5
1,726,990	+		GFF1700	0.12	+0.8
1,726,998	+		GFF1700	0.13	-0.0
1,727,000	+		GFF1700	0.13	-0.2
1,727,018	+		GFF1700	0.15	-1.4
1,727,019	+		GFF1700	0.15	-1.0
1,727,019	+		GFF1700	0.15	-0.5
1,727,019	+		GFF1700	0.15	+0.8
1,727,026	-		GFF1700	0.16	+0.4