Strain Fitness in Sphingobium sp. HT1-2 around GFF1632

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
1,659,072	+		GFF1630	0.43	+1.9
1,659,111	-		GFF1630	0.52	-0.2
1,659,116	+		GFF1630	0.53	-1.1
1,659,118	+		GFF1630	0.54	+0.5
1,659,124	-		GFF1630	0.55	+0.6
1,659,126	-		GFF1630	0.55	-1.1
1,659,126	-		GFF1630	0.55	+1.0
1,659,171	+		GFF1630	0.66	-1.4
1,659,176	+		GFF1630	0.67	+0.3
1,659,188	+		GFF1630	0.69	+0.2
1,659,189	-		GFF1630	0.70	+0.0
1,659,218	+		GFF1630	0.76	-1.6
1,659,272	-		GFF1630	0.88	-0.4
1,659,274	+		GFF1630	0.89	+0.0
1,659,299	+				+1.1
1,659,305	-				-1.5
1,659,312	-				-1.4
1,659,376	+				-0.6
1,659,379	-				+0.6
1,659,384	-				-0.0
1,659,384	-				+0.6
1,659,393	+				-2.4
1,659,393	+				+0.2
1,659,398	-		GFF1631	0.10	-0.6
1,659,415	-		GFF1631	0.13	+0.6
1,659,420	+		GFF1631	0.13	-0.8
1,659,429	+		GFF1631	0.15	-0.2
1,659,437	-		GFF1631	0.16	+0.4
1,659,437	-		GFF1631	0.16	-2.3
1,659,437	-		GFF1631	0.16	-1.4
1,659,446	+		GFF1631	0.17	+0.7
1,659,512	-		GFF1631	0.26	-2.5
1,659,520	+		GFF1631	0.27	+0.1
1,659,528	-		GFF1631	0.28	-0.6
1,659,539	+		GFF1631	0.29	-2.9
1,659,547	-		GFF1631	0.30	-0.1
1,659,573	+		GFF1631	0.34	-0.8
1,659,581	-		GFF1631	0.35	-1.5
1,659,583	+		GFF1631	0.35	-0.1
1,659,594	-		GFF1631	0.36	-1.5
1,659,631	-		GFF1631	0.41	+0.2
1,659,637	+		GFF1631	0.42	-1.5
1,659,645	-		GFF1631	0.43	-1.1
1,659,679	-		GFF1631	0.48	+1.1
1,659,692	+		GFF1631	0.49	-1.2
1,659,692	+		GFF1631	0.49	-2.1
1,659,692	+		GFF1631	0.49	-1.2
1,659,692	+		GFF1631	0.49	+1.4
1,659,692	+		GFF1631	0.49	-0.4
1,659,692	+		GFF1631	0.49	-1.1
1,659,700	-		GFF1631	0.50	-0.3
1,659,700	-		GFF1631	0.50	-0.3
1,659,700	-		GFF1631	0.50	-0.4
1,659,700	-		GFF1631	0.50	+0.8
1,659,700	-		GFF1631	0.50	-0.7
1,659,700	-		GFF1631	0.50	+0.4
1,659,700	-		GFF1631	0.50	+0.5
1,659,707	+		GFF1631	0.51	-1.6
1,659,719	+		GFF1631	0.53	+0.1
1,659,725	-		GFF1631	0.54	-1.7
1,659,730	+		GFF1631	0.54	-1.8
1,659,730	+		GFF1631	0.54	-1.8
1,659,730	+		GFF1631	0.54	-2.7
1,659,742	+		GFF1631	0.56	-0.6
1,659,767	+		GFF1631	0.59	-0.5
1,659,770	-		GFF1631	0.60	+0.2
1,659,786	+		GFF1631	0.62	+0.1
1,659,786	-		GFF1631	0.62	+0.9
1,659,818	+		GFF1631	0.66	+0.4
1,659,826	-		GFF1631	0.67	+0.9
1,659,828	+		GFF1631	0.67	-0.7
1,659,829	+		GFF1631	0.67	-0.2
1,659,829	+		GFF1631	0.67	-0.3
1,659,829	+		GFF1631	0.67	+0.3
1,659,829	+		GFF1631	0.67	-2.1
1,659,837	-		GFF1631	0.69	+0.4
1,659,872	+		GFF1631	0.73	+1.2
1,659,874	-		GFF1631	0.73	-1.6
1,659,890	-		GFF1631	0.76	-1.3
1,659,892	-		GFF1631	0.76	-0.9
1,659,926	+		GFF1631	0.80	+1.0
1,659,944	-		GFF1631	0.83	-1.4
1,659,950	-		GFF1631	0.83	-0.6
1,659,951	+		GFF1631	0.84	-2.2
1,659,982	+		GFF1631	0.88	-1.0
1,659,992	+		GFF1631	0.89	-0.6
1,660,000	-				+1.3
1,660,005	-				-1.0
1,660,041	+				+0.9
1,660,041	+				+0.1
1,660,044	+				+2.7
1,660,052	-				+1.2
1,660,090	+				+0.4
1,660,099	-				-0.4
1,660,113	-				+0.8
1,660,120	-				+2.1
1,660,134	+				-1.7
1,660,134	+				-1.1
1,660,139	+				-1.4
1,660,139	+				-1.4
1,660,142	-				+1.0
1,660,142	-				+1.5
1,660,142	-				+0.4
1,660,147	-				-1.2
1,660,147	-				-0.9
1,660,147	-				-0.1
1,660,152	-				+0.4
1,660,164	+				+0.2
1,660,169	-				-0.1
1,660,169	-				+1.0
1,660,192	+				-0.9
1,660,285	+		GFF1632	0.16	+0.1
1,660,285	+		GFF1632	0.16	+0.6
1,660,285	+		GFF1632	0.16	+1.2
1,660,293	-		GFF1632	0.17	-2.4
1,660,331	+		GFF1632	0.19	+1.3
1,660,338	+		GFF1632	0.20	-0.6
1,660,341	-		GFF1632	0.20	-1.5
1,660,360	-		GFF1632	0.22	-0.4
1,660,406	+		GFF1632	0.25	+0.5
1,660,417	+		GFF1632	0.26	-2.1
1,660,417	+		GFF1632	0.26	-0.7
1,660,417	+		GFF1632	0.26	+0.8
1,660,417	+		GFF1632	0.26	-0.1
1,660,425	-		GFF1632	0.27	+0.3
1,660,425	-		GFF1632	0.27	+0.5
1,660,446	+		GFF1632	0.28	+0.5
1,660,454	-		GFF1632	0.29	+1.6
1,660,469	+		GFF1632	0.30	-2.2
1,660,469	+		GFF1632	0.30	-1.0
1,660,469	+		GFF1632	0.30	-0.5
1,660,469	+		GFF1632	0.30	-2.1
1,660,477	-		GFF1632	0.30	-1.2
1,660,477	-		GFF1632	0.30	+0.7
1,660,477	-		GFF1632	0.30	+1.3
1,660,477	-		GFF1632	0.30	-1.3
1,660,477	-		GFF1632	0.30	-1.9
1,660,477	-		GFF1632	0.30	+0.2
1,660,479	+		GFF1632	0.31	+0.5
1,660,479	+		GFF1632	0.31	+0.8
1,660,479	+		GFF1632	0.31	-1.7
1,660,479	+		GFF1632	0.31	-1.4
1,660,479	+		GFF1632	0.31	+0.6
1,660,479	+		GFF1632	0.31	-3.1
1,660,479	+		GFF1632	0.31	-0.4
1,660,479	+		GFF1632	0.31	+0.2
1,660,479	+		GFF1632	0.31	-2.1
1,660,479	+		GFF1632	0.31	-0.6
1,660,479	+		GFF1632	0.31	+0.2
1,660,482	-		GFF1632	0.31	-0.1
1,660,482	-		GFF1632	0.31	+0.6
1,660,487	-		GFF1632	0.31	-2.1
1,660,487	-		GFF1632	0.31	-0.7
1,660,487	-		GFF1632	0.31	-0.2
1,660,487	-		GFF1632	0.31	-0.3
1,660,487	-		GFF1632	0.31	-1.6
1,660,487	-		GFF1632	0.31	-0.5
1,660,487	-		GFF1632	0.31	+0.2
1,660,487	-		GFF1632	0.31	-1.7
1,660,487	-		GFF1632	0.31	-1.6
1,660,487	-		GFF1632	0.31	-0.4
1,660,487	-		GFF1632	0.31	+1.1
1,660,487	-		GFF1632	0.31	+1.0
1,660,492	-		GFF1632	0.32	-2.5
1,660,498	+		GFF1632	0.32	+0.1
1,660,502	-		GFF1632	0.32	-0.4
1,660,505	+		GFF1632	0.33	-0.9
1,660,505	+		GFF1632	0.33	-1.0
1,660,513	-		GFF1632	0.33	+0.1
1,660,523	-		GFF1632	0.34	-0.1
1,660,526	-		GFF1632	0.34	+0.7
1,660,544	+		GFF1632	0.35	-2.9
1,660,576	-		GFF1632	0.38	+1.5
1,660,576	-		GFF1632	0.38	-1.0
1,660,593	+		GFF1632	0.39	-0.1
1,660,593	+		GFF1632	0.39	-0.7
1,660,594	-		GFF1632	0.39	+1.7
1,660,601	-		GFF1632	0.40	-0.4
1,660,602	-		GFF1632	0.40	+1.5
1,660,606	-		GFF1632	0.40	-0.2
1,660,625	+		GFF1632	0.41	+0.5
1,660,651	+		GFF1632	0.43	+1.0
1,660,664	+		GFF1632	0.44	-1.5
1,660,672	-		GFF1632	0.45	-0.6
1,660,677	+		GFF1632	0.45	+0.6
1,660,737	+		GFF1632	0.50	-1.7
1,660,739	-		GFF1632	0.50	-1.0
1,660,739	-		GFF1632	0.50	-1.0
1,660,745	-		GFF1632	0.50	+0.2
1,660,747	+		GFF1632	0.51	-1.4
1,660,755	-		GFF1632	0.51	+0.1
1,660,778	+		GFF1632	0.53	-2.7
1,660,778	+		GFF1632	0.53	-2.9
1,660,788	+		GFF1632	0.54	-2.1
1,660,789	+		GFF1632	0.54	+0.8
1,660,793	+		GFF1632	0.54	-1.8
1,660,793	+		GFF1632	0.54	+0.5
1,660,796	-		GFF1632	0.54	+0.6
1,660,797	-		GFF1632	0.54	-2.3
1,660,801	-		GFF1632	0.55	-0.8
1,660,801	-		GFF1632	0.55	+1.1
1,660,801	-		GFF1632	0.55	-0.6
1,660,801	-		GFF1632	0.55	+1.1
1,660,803	+		GFF1632	0.55	-0.8
1,660,820	-		GFF1632	0.56	+0.6
1,660,821	+		GFF1632	0.56	+0.1
1,660,821	+		GFF1632	0.56	-0.0
1,660,821	+		GFF1632	0.56	+0.4
1,660,826	+		GFF1632	0.57	-1.7
1,660,829	-		GFF1632	0.57	+1.5
1,660,836	+		GFF1632	0.57	-1.5
1,660,836	+		GFF1632	0.57	+0.4
1,660,836	+		GFF1632	0.57	-0.7
1,660,844	-		GFF1632	0.58	-0.1
1,660,844	-		GFF1632	0.58	+0.0
1,660,844	-		GFF1632	0.58	-0.7
1,660,844	-		GFF1632	0.58	+0.7
1,660,844	-		GFF1632	0.58	-1.9
1,660,844	-		GFF1632	0.58	-0.0
1,660,844	-		GFF1632	0.58	+1.0
1,660,844	-		GFF1632	0.58	-0.6
1,660,844	-		GFF1632	0.58	-0.4
1,660,844	-		GFF1632	0.58	-1.5
1,660,844	-		GFF1632	0.58	+1.4
1,660,844	-		GFF1632	0.58	-1.6
1,660,844	-		GFF1632	0.58	-0.8
1,660,844	-		GFF1632	0.58	+0.3
1,660,844	-		GFF1632	0.58	-0.2
1,660,854	-		GFF1632	0.59	+0.7
1,660,878	-		GFF1632	0.60	-0.1
1,660,898	+		GFF1632	0.62	+0.2
1,660,898	+		GFF1632	0.62	+0.3
1,660,906	-		GFF1632	0.63	+0.3
1,660,922	+		GFF1632	0.64	-1.4
1,660,967	+		GFF1632	0.67	-2.1
1,660,989	-		GFF1632	0.69	+0.5
1,660,995	+		GFF1632	0.69	-3.1
1,660,995	+		GFF1632	0.69	-1.9
1,660,995	+		GFF1632	0.69	+0.2
1,661,003	-		GFF1632	0.70	-1.6
1,661,003	-		GFF1632	0.70	+0.5
1,661,003	-		GFF1632	0.70	+0.4
1,661,009	+		GFF1632	0.70	-1.7
1,661,022	-		GFF1632	0.71	-0.3
1,661,032	-		GFF1632	0.72	-1.1
1,661,040	-		GFF1632	0.73	+0.3
1,661,049	-		GFF1632	0.73	-1.5
1,661,068	+		GFF1632	0.75	+0.3
1,661,120	+		GFF1632	0.79	-1.6
1,661,135	+		GFF1632	0.80	-1.8
1,661,143	-		GFF1632	0.80	-2.6
1,661,143	-		GFF1632	0.80	+0.2
1,661,143	-		GFF1632	0.80	-0.9
1,661,159	+		GFF1632	0.81	-1.2
1,661,175	-		GFF1632	0.83	+0.1
1,661,176	+		GFF1632	0.83	+0.2
1,661,191	+		GFF1632	0.84	-0.9
1,661,199	-		GFF1632	0.84	-2.1
1,661,217	-		GFF1632	0.86	+1.5
1,661,227	-		GFF1632	0.87	+0.8
1,661,253	+		GFF1632	0.89	-1.4
1,661,266	-		GFF1632	0.90	-0.2
1,661,276	+				-0.4
1,661,276	+				+0.7
1,661,276	+				-0.3
1,661,284	-				-0.0
1,661,284	-				-0.1
1,661,298	+				-2.0
1,661,298	+				-1.5
1,661,298	+				-0.4
1,661,342	+				-0.5
1,661,343	+				-0.4
1,661,350	+				-0.7
1,661,351	+				-1.1
1,661,355	+				-1.0
1,661,355	+				-0.5
1,661,355	+				-0.5
1,661,357	+				-0.8
1,661,363	-				-0.8
1,661,371	+				-1.0
1,661,406	+				+0.2
1,661,424	-				+0.5
1,661,455	+				-0.8
1,661,466	-				-0.1
1,661,485	-				+1.0
1,661,490	+				+0.2
1,661,493	-				-1.7
1,661,498	-				-0.4
1,661,498	-				+0.5
1,661,503	-				+0.1
1,661,528	+				+0.4
1,661,528	+				-0.4
1,661,528	+				-0.1
1,661,528	+				-0.2
1,661,528	+				-0.0
1,661,528	+				-1.9
1,661,528	+				+1.1
1,661,536	-				+0.2
1,661,536	-				-0.4
1,661,536	-				-0.2
1,661,536	-				-1.4
1,661,560	+		GFF1633	0.11	-0.9
1,661,560	+		GFF1633	0.11	-1.5
1,661,563	-		GFF1633	0.11	-0.3
1,661,565	+		GFF1633	0.12	-1.5
1,661,568	-		GFF1633	0.12	-0.3
1,661,568	-		GFF1633	0.12	-1.6
1,661,570	+		GFF1633	0.13	+0.3
1,661,573	+		GFF1633	0.13	-0.3
1,661,573	-		GFF1633	0.13	-0.1
1,661,575	+		GFF1633	0.14	-0.6
1,661,578	-		GFF1633	0.14	+0.4
1,661,583	-		GFF1633	0.16	-0.2
1,661,583	-		GFF1633	0.16	-1.2
1,661,583	-		GFF1633	0.16	-0.4
1,661,622	-		GFF1633	0.24	-2.0
1,661,662	+		GFF1633	0.32	+0.5
1,661,674	+		GFF1633	0.34	-0.1
1,661,675	-		GFF1633	0.35	-0.2
1,661,675	-		GFF1633	0.35	+0.6
1,661,710	-		GFF1633	0.42	+0.0
1,661,728	+		GFF1633	0.46	+0.8
1,661,728	-		GFF1633	0.46	+1.0
1,661,731	-		GFF1633	0.46	-0.7
1,661,755	-		GFF1633	0.51	-1.9
1,661,755	-		GFF1633	0.51	-2.8
1,661,755	-		GFF1633	0.51	+0.3
1,661,804	+		GFF1633	0.61	+0.0
1,661,804	+		GFF1633	0.61	-0.6
1,661,807	-		GFF1633	0.62	+1.0
1,661,812	-		GFF1633	0.63	+0.5
1,661,812	-		GFF1633	0.63	-1.3
1,661,812	-		GFF1633	0.63	+0.9
1,661,813	-		GFF1633	0.63	+0.7
1,661,819	-		GFF1633	0.64	+1.0
1,661,819	-		GFF1633	0.64	-2.6
1,661,850	-		GFF1633	0.71	-0.5
1,661,854	-		GFF1633	0.72	-0.2
1,661,858	+		GFF1633	0.72	-2.0
1,661,859	-		GFF1633	0.73	-0.8
1,661,859	-		GFF1633	0.73	-0.5
1,661,865	+		GFF1633	0.74	-1.8
1,661,881	+		GFF1633	0.77	+1.4
1,661,882	+		GFF1633	0.77	-0.9
1,661,882	+		GFF1633	0.77	-0.8
1,661,907	+		GFF1633	0.83	+0.6
1,661,914	+		GFF1633	0.84	-1.2
1,661,914	+		GFF1633	0.84	-0.2
1,661,914	+		GFF1633	0.84	-0.6
1,661,914	+		GFF1633	0.84	-2.0
1,661,914	+		GFF1633	0.84	+0.7
1,661,914	+		GFF1633	0.84	+1.3
1,661,930	-		GFF1633	0.87	+0.4
1,661,935	-		GFF1633	0.88	+0.2
1,661,935	-		GFF1633	0.88	-0.0
1,661,937	+		GFF1633	0.89	+0.1
1,661,943	+				+0.0
1,661,947	-				+0.8
1,661,949	+				-1.1
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1,662,321	+		GFF1634	0.11	-0.4
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1,662,399	+		GFF1634	0.17	+0.2