Strain Fitness in Sphingobium sp. HT1-2 around GFF1620

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
1,646,042	+		GFF1619	0.30	+1.4
1,646,045	-		GFF1619	0.30	+0.7
1,646,087	-		GFF1619	0.34	-2.0
1,646,093	-		GFF1619	0.34	+0.1
1,646,117	+		GFF1619	0.36	-1.5
1,646,128	+		GFF1619	0.37	+1.5
1,646,128	+		GFF1619	0.37	+0.4
1,646,131	+		GFF1619	0.37	-0.1
1,646,133	+		GFF1619	0.37	-0.3
1,646,136	-		GFF1619	0.37	+0.5
1,646,136	-		GFF1619	0.37	-1.6
1,646,136	-		GFF1619	0.37	-1.4
1,646,138	+		GFF1619	0.38	-1.6
1,646,139	-		GFF1619	0.38	-2.7
1,646,141	-		GFF1619	0.38	+1.0
1,646,141	-		GFF1619	0.38	-0.3
1,646,146	-		GFF1619	0.38	-0.3
1,646,187	+		GFF1619	0.41	+0.5
1,646,190	-		GFF1619	0.42	-0.9
1,646,197	-		GFF1619	0.42	-1.2
1,646,199	+		GFF1619	0.42	-1.5
1,646,207	-		GFF1619	0.43	-0.1
1,646,207	-		GFF1619	0.43	+1.0
1,646,271	+		GFF1619	0.48	+1.6
1,646,277	+		GFF1619	0.48	-0.6
1,646,277	+		GFF1619	0.48	-0.0
1,646,286	-		GFF1619	0.49	+0.4
1,646,308	+		GFF1619	0.51	-1.5
1,646,316	-		GFF1619	0.51	-0.8
1,646,326	-		GFF1619	0.52	+0.8
1,646,334	+		GFF1619	0.53	+0.4
1,646,351	+		GFF1619	0.54	+0.9
1,646,387	-		GFF1619	0.57	-0.4
1,646,393	-		GFF1619	0.58	+1.0
1,646,427	+		GFF1619	0.60	+0.0
1,646,427	+		GFF1619	0.60	-1.3
1,646,435	-		GFF1619	0.61	+1.7
1,646,435	-		GFF1619	0.61	+0.2
1,646,435	-		GFF1619	0.61	-0.3
1,646,435	-		GFF1619	0.61	+0.1
1,646,435	-		GFF1619	0.61	-2.3
1,646,435	-		GFF1619	0.61	-0.0
1,646,467	+		GFF1619	0.63	-0.1
1,646,473	-		GFF1619	0.64	-0.2
1,646,475	-		GFF1619	0.64	+0.5
1,646,518	+		GFF1619	0.67	+0.1
1,646,527	+		GFF1619	0.68	-1.9
1,646,535	-		GFF1619	0.69	-0.3
1,646,545	+		GFF1619	0.69	+0.4
1,646,547	+		GFF1619	0.70	-1.6
1,646,547	+		GFF1619	0.70	-0.3
1,646,547	+		GFF1619	0.70	+0.5
1,646,547	+		GFF1619	0.70	-0.8
1,646,547	+		GFF1619	0.70	-1.2
1,646,547	+		GFF1619	0.70	-1.1
1,646,547	+		GFF1619	0.70	-0.1
1,646,555	-		GFF1619	0.70	+0.3
1,646,555	-		GFF1619	0.70	-0.7
1,646,555	-		GFF1619	0.70	-0.8
1,646,555	-		GFF1619	0.70	-0.7
1,646,555	-		GFF1619	0.70	-1.6
1,646,599	+		GFF1619	0.74	+0.9
1,646,599	+		GFF1619	0.74	-1.4
1,646,600	-		GFF1619	0.74	-0.2
1,646,605	+		GFF1619	0.74	+1.4
1,646,618	-		GFF1619	0.75	-0.1
1,646,619	+		GFF1619	0.75	-0.2
1,646,643	+		GFF1619	0.77	-0.5
1,646,650	+		GFF1619	0.78	+1.0
1,646,651	-		GFF1619	0.78	+1.4
1,646,651	-		GFF1619	0.78	-0.0
1,646,678	+		GFF1619	0.80	+0.5
1,646,686	-		GFF1619	0.80	-0.3
1,646,730	+		GFF1619	0.84	-0.9
1,646,799	-		GFF1619	0.89	+0.1
1,646,805	+		GFF1619	0.90	+0.3
1,646,813	-				+0.9
1,646,813	-				-1.4
1,646,885	-				-0.0
1,646,885	-				-0.2
1,646,885	-				-1.0
1,646,899	+				-1.1
1,646,907	-				+0.5
1,646,930	+				+0.3
1,646,935	+				+0.6
1,646,940	+				-1.7
1,646,941	+				-0.2
1,646,943	+				-0.4
1,646,943	-				-0.7
1,646,948	-				-0.5
1,646,959	-				+0.7
1,646,959	-				+0.3
1,646,966	-				-1.7
1,646,978	-				-0.4
1,646,993	+				-0.7
1,647,011	-				+0.4
1,647,012	-				-0.4
1,647,014	+				+0.4
1,647,022	-				+0.4
1,647,040	+				-2.0
1,647,048	-				-1.6
1,647,048	-				-1.1
1,647,069	+				-1.0
1,647,099	+				-1.4
1,647,099	+				-2.0
1,647,099	+				-0.3
1,647,099	+				-0.0
1,647,099	+				-0.1
1,647,099	+				+0.9
1,647,099	+				-0.7
1,647,099	+				-0.4
1,647,099	+				+0.2
1,647,099	+				-1.8
1,647,099	+				-1.3
1,647,099	+				-0.6
1,647,099	+				-0.5
1,647,099	+				+1.0
1,647,099	+				-0.2
1,647,099	+				-1.4
1,647,099	+				-1.2
1,647,099	+				-1.1
1,647,099	+				-0.3
1,647,099	+				-0.4
1,647,099	+				-0.3
1,647,099	+				-0.2
1,647,099	+				-1.6
1,647,099	+				-0.2
1,647,099	+				-0.0
1,647,099	+				-0.7
1,647,099	+				-0.5
1,647,099	+				-1.2
1,647,099	+				-0.1
1,647,099	+				+0.2
1,647,104	+				+0.5
1,647,107	-				-2.4
1,647,107	-				-2.4
1,647,107	-				-1.7
1,647,107	-				-1.5
1,647,107	-				+0.8
1,647,107	-				-0.1
1,647,107	-				+1.8
1,647,107	-				+1.5
1,647,107	-				-1.3
1,647,107	-				-0.9
1,647,107	-				+0.8
1,647,107	-				+0.5
1,647,107	-				-0.3
1,647,107	-				+0.4
1,647,107	-				-0.2
1,647,107	-				-1.5
1,647,107	-				-1.8
1,647,107	-				+0.4
1,647,107	-				+0.9
1,647,107	-				-1.9
1,647,107	-				-1.7
1,647,107	-				+1.2
1,647,107	-				+0.0
1,647,107	-				+0.1
1,647,107	-				+0.3
1,647,107	-				+0.5
1,647,109	+				-0.4
1,647,112	-				-0.7
1,647,145	+				-0.1
1,647,151	+				-1.0
1,647,153	-				-2.0
1,647,153	-				-1.2
1,647,153	-				-0.8
1,647,162	+				-0.6
1,647,162	+				-1.2
1,647,162	+				-0.3
1,647,170	-		GFF1620	0.10	-2.1
1,647,172	+		GFF1620	0.10	+0.6
1,647,172	+		GFF1620	0.10	-0.8
1,647,175	-		GFF1620	0.10	-0.4
1,647,233	+		GFF1620	0.15	-1.0
1,647,241	-		GFF1620	0.16	+0.0
1,647,247	+		GFF1620	0.16	-2.0
1,647,252	+		GFF1620	0.17	-0.7
1,647,255	-		GFF1620	0.17	-1.9
1,647,255	-		GFF1620	0.17	+0.6
1,647,260	-		GFF1620	0.17	+1.0
1,647,264	-		GFF1620	0.17	-0.6
1,647,291	-		GFF1620	0.20	+0.9
1,647,322	-		GFF1620	0.22	+0.7
1,647,394	-		GFF1620	0.28	-1.1
1,647,401	-		GFF1620	0.28	+0.9
1,647,403	+		GFF1620	0.28	-0.2
1,647,403	+		GFF1620	0.28	-1.7
1,647,403	+		GFF1620	0.28	-0.5
1,647,411	-		GFF1620	0.29	-0.2
1,647,411	-		GFF1620	0.29	-0.4
1,647,411	-		GFF1620	0.29	-1.2
1,647,466	+		GFF1620	0.33	-0.2
1,647,474	-		GFF1620	0.34	-0.9
1,647,484	-		GFF1620	0.35	-0.0
1,647,493	+		GFF1620	0.35	-0.7
1,647,498	+		GFF1620	0.36	-0.4
1,647,499	+		GFF1620	0.36	-1.5
1,647,499	+		GFF1620	0.36	-0.7
1,647,499	+		GFF1620	0.36	-1.0
1,647,506	-		GFF1620	0.36	-1.1
1,647,506	-		GFF1620	0.36	-0.4
1,647,507	+		GFF1620	0.37	-1.0
1,647,566	-		GFF1620	0.41	-1.6
1,647,575	+		GFF1620	0.42	-0.9
1,647,575	+		GFF1620	0.42	-0.8
1,647,579	-		GFF1620	0.42	-0.1
1,647,580	+		GFF1620	0.42	+0.0
1,647,583	-		GFF1620	0.43	-0.6
1,647,584	+		GFF1620	0.43	-0.5
1,647,588	-		GFF1620	0.43	-1.9
1,647,599	+		GFF1620	0.44	-0.7
1,647,607	-		GFF1620	0.44	-0.0
1,647,622	-		GFF1620	0.46	+0.3
1,647,679	-		GFF1620	0.50	+0.1
1,647,686	-		GFF1620	0.51	-0.2
1,647,706	+		GFF1620	0.52	-1.4
1,647,706	+		GFF1620	0.52	-1.1
1,647,711	+		GFF1620	0.53	-0.0
1,647,711	+		GFF1620	0.53	+0.5
1,647,719	-		GFF1620	0.53	-0.2
1,647,719	-		GFF1620	0.53	+0.7
1,647,726	-		GFF1620	0.54	-1.5
1,647,747	+		GFF1620	0.55	-0.1
1,647,755	-		GFF1620	0.56	-1.2
1,647,765	+		GFF1620	0.57	-1.5
1,647,770	+		GFF1620	0.57	+1.4
1,647,770	+		GFF1620	0.57	+0.0
1,647,778	-		GFF1620	0.58	+0.4
1,647,778	-		GFF1620	0.58	+0.8
1,647,778	-		GFF1620	0.58	-0.5
1,647,800	-		GFF1620	0.60	-0.7
1,647,808	+		GFF1620	0.60	-0.9
1,647,808	+		GFF1620	0.60	-1.7
1,647,808	+		GFF1620	0.60	-0.7
1,647,816	-		GFF1620	0.61	-0.4
1,647,823	+		GFF1620	0.61	-1.1
1,647,831	-		GFF1620	0.62	-1.3
1,647,831	-		GFF1620	0.62	-0.6
1,647,840	+		GFF1620	0.63	-1.1
1,647,844	+		GFF1620	0.63	-0.3
1,647,849	+		GFF1620	0.63	-0.9
1,647,852	-		GFF1620	0.64	+0.0
1,647,852	-		GFF1620	0.64	-0.6
1,647,852	-		GFF1620	0.64	+0.2
1,647,854	+		GFF1620	0.64	-0.6
1,647,857	-		GFF1620	0.64	+0.7
1,647,857	-		GFF1620	0.64	-0.1
1,647,907	+		GFF1620	0.68	+0.7
1,647,937	+		GFF1620	0.70	+0.2
1,647,951	+		GFF1620	0.71	+0.1
1,647,951	+		GFF1620	0.71	-0.1
1,647,951	+		GFF1620	0.71	-2.1
1,647,955	+		GFF1620	0.72	-2.2
1,647,970	+		GFF1620	0.73	+0.2
1,647,973	-		GFF1620	0.73	-0.5
1,647,974	+		GFF1620	0.73	-0.4
1,647,974	+		GFF1620	0.73	+0.4
1,647,974	+		GFF1620	0.73	-2.2
1,647,980	+		GFF1620	0.74	-0.3
1,647,982	-		GFF1620	0.74	+1.0
1,647,982	-		GFF1620	0.74	+0.4
1,647,982	-		GFF1620	0.74	+0.3
1,647,982	-		GFF1620	0.74	-0.2
1,647,992	+		GFF1620	0.75	-1.0
1,647,994	+		GFF1620	0.75	-1.1
1,647,998	+		GFF1620	0.75	+0.3
1,647,998	+		GFF1620	0.75	-0.6
1,647,998	+		GFF1620	0.75	-2.0
1,647,998	+		GFF1620	0.75	-0.2
1,647,998	+		GFF1620	0.75	-0.8
1,647,999	+		GFF1620	0.75	+0.8
1,648,000	-		GFF1620	0.75	+0.0
1,648,006	-		GFF1620	0.76	-0.8
1,648,006	-		GFF1620	0.76	-1.5
1,648,006	-		GFF1620	0.76	-0.9
1,648,006	-		GFF1620	0.76	+1.3
1,648,006	-		GFF1620	0.76	+0.1
1,648,014	-		GFF1620	0.76	-1.2
1,648,021	+		GFF1620	0.77	-1.4
1,648,032	+		GFF1620	0.78	-1.0
1,648,050	-		GFF1620	0.79	-0.7
1,648,073	-		GFF1620	0.81	-0.1
1,648,105	+		GFF1620	0.84	-0.1
1,648,105	+		GFF1620	0.84	+0.4
1,648,105	+		GFF1620	0.84	+0.1
1,648,110	+		GFF1620	0.84	-1.2
1,648,113	-		GFF1620	0.84	-0.7
1,648,118	-		GFF1620	0.85	-0.1
1,648,118	-		GFF1620	0.85	-0.4
1,648,120	+		GFF1620	0.85	-1.7
1,648,121	+		GFF1620	0.85	-0.7
1,648,140	-		GFF1620	0.86	-1.0
1,648,145	-		GFF1620	0.87	-1.0
1,648,155	+		GFF1620	0.88	-1.0
1,648,155	+		GFF1620	0.88	-0.5
1,648,155	+		GFF1620	0.88	-0.0
1,648,155	+		GFF1620	0.88	-0.3
1,648,162	-		GFF1620	0.88	+0.4
1,648,163	-		GFF1620	0.88	-1.3
1,648,163	-		GFF1620	0.88	-0.5
1,648,163	-		GFF1620	0.88	-0.5
1,648,163	-		GFF1620	0.88	+0.7
1,648,173	-		GFF1620	0.89	-0.7
1,648,173	-		GFF1620	0.89	-2.1
1,648,174	+		GFF1620	0.89	-0.5
1,648,174	+		GFF1620	0.89	+0.3
1,648,174	+		GFF1620	0.89	-1.1
1,648,182	-		GFF1620	0.90	+0.7
1,648,182	-		GFF1620	0.90	-0.6
1,648,182	-		GFF1620	0.90	+0.8
1,648,182	-		GFF1620	0.90	-0.5
1,648,182	-		GFF1620	0.90	-0.7
1,648,192	-				-1.1
1,648,204	-				+1.1
1,648,210	-				-0.0
1,648,230	-				-1.1
1,648,250	-				-2.3
1,648,273	+				-1.7
1,648,273	+				-0.6
1,648,273	+				-0.4
1,648,291	-				-0.8
1,648,298	+				-1.6
1,648,306	-				+1.0
1,648,328	-				-2.5
1,648,343	-				-0.2
1,648,353	+				+0.8
1,648,358	+				-0.3
1,648,361	-				-0.9
1,648,375	+				-1.7
1,648,375	+				-0.4
1,648,383	-				-0.8
1,648,383	-				-1.7
1,648,399	+				-1.0
1,648,410	+				-1.5
1,648,410	+				-1.7
1,648,410	+				-1.5
1,648,410	+				+0.5
1,648,410	+				-0.6
1,648,410	+				+0.6
1,648,410	+				-0.9
1,648,410	+				+0.6
1,648,418	-				-0.0
1,648,418	-				-0.7
1,648,418	-				+0.5
1,648,418	-				-2.4
1,648,418	-				+0.9
1,648,418	-				-0.6
1,648,418	-				+0.4
1,648,418	-				-2.2
1,648,418	-				-0.0
1,648,418	-				+0.2
1,648,418	-				-0.0
1,648,435	+				+0.4
1,648,441	-				-0.5
1,648,456	+				+0.5
1,648,520	+				+0.8
1,648,522	-				-2.5
1,648,528	-				+1.1